Contacts of the helix formed by residues 91 - 105 (chain A) in PDB entry 2ZHX
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 91 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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70A TYR* 3.6 36.8 - - + +
75A HIS* 4.8 2.9 - - - +
83A VAL* 3.5 33.4 - - + -
87A VAL* 4.5 3.1 - - + -
90A TRP* 1.4 87.4 - - + +
92A ARG* 1.3 58.7 + - - +
93A SER 3.3 0.2 - - - -
94A LEU* 2.7 29.4 + - + +
95A ALA 2.9 10.2 + - - -
19B GLN* 3.5 27.8 - - + +
20B GLU* 3.8 7.9 - - - +
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Residues in contact with ARG 92 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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89A PRO* 5.5 0.8 - - - +
90A TRP* 2.3 45.4 + - - +
91A PRO* 1.3 67.3 - - - +
93A SER* 1.3 67.3 + - - +
95A ALA* 3.1 24.7 + - - +
96A ASN* 2.9 27.4 + - - -
194A PRO* 3.7 20.9 - - + -
19B GLN* 4.8 2.4 + - - +
20B GLU* 3.5 5.1 + - - +
45B THR* 4.1 13.7 - - + +
46B ALA 4.9 0.4 - - - +
47B TYR* 3.3 63.9 - - + +
54B ASN* 3.1 28.7 + - - +
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Residues in contact with SER 93 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70A TYR* 5.1 4.5 - - - -
81A PHE* 4.8 10.5 - - - -
92A ARG* 1.3 71.4 - - - +
94A LEU* 1.3 51.3 + - - +
96A ASN* 3.2 4.0 + - - +
97A ILE* 2.8 37.5 + - - +
191A HIS* 3.1 30.3 - - - -
192A PRO* 3.8 16.1 - - - +
193A SER* 3.4 5.6 + - - +
194A PRO* 4.0 1.4 - - - +
20B GLU* 2.7 40.1 + - - -
22B ILE* 3.8 2.0 - - - +
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Residues in contact with LEU 94 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70A TYR* 4.1 3.8 - - - +
81A PHE 3.4 28.5 - - - +
83A VAL* 3.9 13.7 - - + -
90A TRP* 4.7 5.2 - - + -
91A PRO* 2.7 27.5 + - + +
93A SER* 1.3 75.3 - - - +
95A ALA* 1.3 61.9 + - - +
97A ILE* 3.1 21.5 + - + +
98A PHE* 2.9 42.0 + - + -
113A GLY* 3.5 33.9 - - - +
115A LEU* 4.1 22.4 - - + -
118A TRP* 6.2 0.2 - - + -
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Residues in contact with ALA 95 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90A TRP* 3.9 18.4 - - - +
91A PRO 2.9 5.7 + - - -
92A ARG* 3.2 44.4 - - - +
94A LEU* 1.3 74.3 - - - +
96A ASN* 1.3 64.6 + - - +
98A PHE* 3.0 9.6 + - - +
99A ASP* 3.0 27.3 + - - +
109A LEU* 5.4 0.2 - - - +
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Residues in contact with ASN 96 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92A ARG* 2.9 15.3 + - - +
93A SER 3.4 2.2 - - - +
95A ALA* 1.3 72.9 - - - +
97A ILE* 1.3 69.1 + - - +
99A ASP* 2.7 24.0 + - - +
100A GLU 3.1 8.8 + - - -
192A PRO 2.8 31.0 + - - +
194A PRO* 3.3 31.7 - - - +
197A ALA* 3.6 7.4 - - + +
201A PHE* 3.9 6.1 - - + -
202A PHE* 3.7 27.3 - - + -
54B ASN* 5.1 6.1 + - - +
73B GLN* 5.5 0.4 + - - -
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Residues in contact with ILE 97 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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81A PHE* 3.9 25.4 - - + -
93A SER 2.8 24.7 + - - +
94A LEU* 3.1 22.9 + - + +
96A ASN* 1.3 72.1 - - - +
98A PHE* 1.3 64.5 + - + +
100A GLU* 3.4 3.8 + - - +
101A TYR* 2.8 24.6 + - - +
115A LEU* 6.2 0.2 - - + -
118A TRP* 4.8 7.9 - - + -
168A TRP* 3.4 36.1 - - + -
192A PRO* 3.6 17.0 - - + -
201A PHE* 3.7 10.0 - - + -
207A PHE* 3.5 25.7 - - + -
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Residues in contact with PHE 98 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90A TRP* 4.0 23.3 - + - -
94A LEU* 2.9 27.2 + - + +
95A ALA* 3.2 10.8 - - - +
96A ASN 2.9 0.2 - - - -
97A ILE* 1.3 85.0 - - + +
99A ASP* 1.3 55.4 + - - +
101A TYR* 3.1 15.6 + + + +
102A THR* 2.8 29.1 + - - +
109A LEU* 3.8 15.5 - - + -
110A PRO* 3.7 30.7 - - + -
112A ASN 3.7 22.7 - - - -
113A GLY* 3.9 10.5 - - - -
115A LEU* 3.6 31.6 - - + -
118A TRP* 4.6 9.9 - + - -
226A LEU* 4.4 8.3 - - + -
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Residues in contact with ASP 99 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95A ALA* 3.0 18.6 + - - +
96A ASN* 2.7 23.7 + - - +
98A PHE* 1.3 69.6 - - - +
100A GLU* 1.3 53.5 + - - +
102A THR* 2.9 10.2 + - - -
103A ALA* 2.7 35.9 + - - +
109A LEU* 4.3 14.2 - - - +
202A PHE* 4.2 13.8 - - + -
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Residues in contact with GLU 100 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96A ASN 3.1 2.6 + - - -
97A ILE 3.7 7.6 - - - +
99A ASP* 1.3 77.4 - - - +
101A TYR* 1.3 53.8 + - - +
103A ALA* 4.0 4.2 - - - +
104A ASP* 2.6 38.5 + - - +
201A PHE* 3.8 30.3 - - + +
202A PHE* 3.4 13.2 - - + +
203A GLY 2.9 26.0 + - - -
205A ARG* 2.8 50.2 + - - -
206A PRO* 3.8 21.1 - - + -
207A PHE* 4.1 2.0 - - + -
54E THR* 5.4 0.2 - - - +
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Residues in contact with TYR 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97A ILE 2.8 11.6 + - - +
98A PHE* 3.1 19.0 + + + +
100A GLU* 1.3 74.0 - - - +
102A THR* 1.3 66.1 + - + +
105A LEU* 3.1 50.8 + - + +
107A TYR* 3.2 23.0 - + + +
108A PRO 3.8 9.6 - - - -
110A PRO* 3.7 24.5 - - + -
118A TRP* 4.0 19.5 - + - -
207A PHE* 3.2 26.2 - + + -
224A TRP* 4.3 0.7 - - + -
225A ARG* 3.2 39.1 - - - -
226A LEU* 3.4 19.1 + - + +
227A PRO* 3.8 4.9 - - - +
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Residues in contact with THR 102 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98A PHE 2.8 19.7 + - - +
99A ASP* 2.9 18.0 + - - -
101A TYR* 1.3 77.8 - - + +
103A ALA* 1.3 62.0 + - - +
105A LEU 2.4 21.9 - - - +
106A GLY* 4.4 1.4 - - - +
107A TYR 3.4 25.3 - - - +
108A PRO* 3.7 1.8 - - + -
109A LEU* 3.5 36.3 - - + +
47E SER* 4.8 1.6 + - - -
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Residues in contact with ALA 103 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99A ASP 2.7 17.7 + - - +
100A GLU* 3.6 11.0 - - - +
102A THR* 1.3 80.2 + - - +
104A ASP* 1.3 62.0 + - - +
105A LEU 4.2 0.7 - - - +
205A ARG* 3.9 20.8 - - - +
47E SER* 3.0 35.1 + - - -
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Residues in contact with ASP 104 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100A GLU* 2.6 24.0 + - - +
101A TYR 4.2 1.8 - - - +
103A ALA* 1.3 76.5 - - - +
105A LEU* 1.3 62.0 + - - +
205A ARG* 3.2 36.8 - - - +
207A PHE* 3.1 21.7 + - + +
208A SER* 2.7 51.6 + - - -
47E SER* 5.4 0.7 - - - -
48E ASN* 6.0 0.3 + - - -
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Residues in contact with LEU 105 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A TYR* 3.1 30.8 + - + +
102A THR 2.4 30.2 - - - +
103A ALA 4.7 0.7 - - - -
104A ASP* 1.3 77.9 - - - +
106A GLY* 1.3 62.3 + - - +
107A TYR* 2.9 43.6 + - + +
207A PHE* 4.0 14.4 - - + -
208A SER* 4.2 32.8 - - - +
211A ASN* 5.3 2.5 - - - +
224A TRP* 3.9 20.2 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il