Contacts of the helix formed by residues 91 - 105 (chain C) in PDB entry 2ZHX
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 91 (chain C).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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70C TYR* 3.5 45.5 - - + +
75C HIS* 4.8 3.4 - - - +
83C VAL* 3.8 21.1 - - + -
87C VAL* 4.6 4.5 - - + -
90C TRP* 1.4 86.6 - - + +
92C ARG* 1.3 61.1 + - - +
93C SER 3.2 0.2 - - - -
94C LEU* 2.8 25.4 + - + +
95C ALA 2.9 9.7 + - - -
19D GLN* 3.5 27.6 - - + +
20D GLU* 3.6 12.3 - - - +
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Residues in contact with ARG 92 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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89C PRO* 5.0 1.8 - - - +
90C TRP* 2.4 41.5 + - - +
91C PRO* 1.3 69.1 - - - +
93C SER* 1.3 63.2 + - - +
95C ALA* 2.9 21.5 + - - +
96C ASN* 2.8 29.1 + - - -
194C PRO* 3.7 20.4 - - + -
19D GLN* 4.1 3.3 + - - +
20D GLU* 3.3 4.4 + - - +
45D THR* 4.0 17.4 + - + -
46D ALA 4.7 0.4 - - - +
47D TYR* 3.1 59.6 - - + +
54D ASN* 2.9 30.5 - - - +
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Residues in contact with SER 93 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70C TYR* 4.9 6.7 - - - -
81C PHE* 5.0 6.7 - - - -
92C ARG* 1.3 72.9 - - - +
94C LEU* 1.3 57.0 + - - +
96C ASN* 3.1 3.1 + - - +
97C ILE* 2.8 33.3 + - - +
191C HIS* 3.3 29.9 - - - -
192C PRO* 3.9 13.7 - - - +
193C SER* 3.4 7.9 - - - +
194C PRO* 4.1 0.8 - - - +
20D GLU* 2.5 39.8 + - - -
22D ILE* 3.7 3.6 - - - +
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Residues in contact with LEU 94 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70C TYR* 3.9 14.1 + - - +
81C PHE* 3.6 24.2 - - + +
83C VAL* 3.7 29.6 - - + -
90C TRP* 4.3 11.0 - - + -
91C PRO* 2.8 13.8 + - + +
93C SER* 1.3 75.1 - - - +
95C ALA* 1.3 62.5 + - - +
97C ILE* 3.3 17.6 + - + +
98C PHE* 3.0 49.0 + - + -
113C GLY* 3.7 14.8 - - - +
115C LEU* 4.1 17.9 - - + -
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Residues in contact with ALA 95 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90C TRP* 3.9 18.8 - - - +
91C PRO 2.9 6.8 + - - +
92C ARG* 2.9 40.6 + - - +
94C LEU* 1.3 72.7 - - - +
96C ASN* 1.3 70.9 + - - +
98C PHE* 2.9 17.1 + - - +
99C ASP* 2.9 19.8 + - - +
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Residues in contact with ASN 96 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92C ARG* 2.8 15.7 + - - +
93C SER 3.6 1.6 - - - +
95C ALA* 1.3 73.9 - - - +
97C ILE* 1.3 67.5 + - - +
99C ASP* 2.8 23.7 + - - +
100C GLU 3.0 9.9 + - - -
192C PRO 2.7 30.8 + - - +
194C PRO* 3.4 31.1 - - - +
197C ALA* 3.5 10.7 - - + +
201C PHE* 3.9 5.1 - - + -
202C PHE* 3.7 28.3 - - + -
54D ASN* 5.2 4.6 + - - +
73D GLN* 5.4 0.6 + - - -
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Residues in contact with ILE 97 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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81C PHE* 3.6 30.3 - - + -
93C SER 2.8 24.2 + - - +
94C LEU* 3.4 18.8 - - + +
96C ASN* 1.3 73.4 - - - +
98C PHE* 1.3 55.2 + - + +
100C GLU* 3.2 4.5 + - - +
101C TYR* 2.7 32.6 + - - +
115C LEU* 6.3 0.4 - - + -
118C TRP* 4.5 11.9 - - + -
168C TRP* 3.4 34.5 - - + -
192C PRO* 3.6 20.2 - - + -
201C PHE* 3.8 9.2 - - + -
207C PHE* 3.7 25.2 - - + -
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Residues in contact with PHE 98 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90C TRP* 4.2 21.3 - + - +
94C LEU* 3.0 27.0 + - + -
95C ALA* 2.9 12.0 + - - +
97C ILE* 1.3 80.9 - - + +
99C ASP* 1.3 54.7 + - - +
101C TYR* 3.1 17.1 - + + +
102C THR* 2.9 28.9 + - - +
109C LEU* 3.8 16.2 - - + -
110C PRO* 3.5 32.1 - - + -
112C ASN 3.6 21.8 - - - -
113C GLY* 3.7 11.9 - - - -
115C LEU* 3.7 30.7 - - + -
118C TRP* 4.6 10.3 - + - -
226C LEU* 4.4 10.5 - - + -
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Residues in contact with ASP 99 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95C ALA* 2.9 18.1 + - - +
96C ASN* 2.8 24.7 + - - +
98C PHE* 1.3 67.0 - - - +
100C GLU* 1.3 64.8 + - - +
102C THR* 2.7 25.3 + - - -
103C ALA* 2.9 10.4 + - - +
109C LEU* 4.3 15.3 - - - +
202C PHE* 4.0 14.1 - - + -
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Residues in contact with GLU 100 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96C ASN 3.0 5.3 + - - -
97C ILE 3.5 8.1 - - - +
99C ASP* 1.3 74.7 - - - +
101C TYR* 1.3 52.1 + - - +
103C ALA* 3.4 4.7 - - - +
104C ASP* 2.6 34.5 + - - +
201C PHE* 3.5 29.8 - - + +
202C PHE* 3.3 16.0 - - + +
203C GLY 2.8 28.6 + - - -
205C ARG* 2.8 48.2 + - - -
206C PRO* 3.7 23.3 - - + -
207C PHE* 4.3 0.7 - - + -
54I THR* 5.3 0.3 - - - +
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Residues in contact with TYR 101 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97C ILE 2.7 13.6 + - - +
98C PHE* 3.1 20.4 - + + +
99C ASP 3.0 0.2 - - - -
100C GLU* 1.3 72.7 - - - +
102C THR* 1.3 75.0 + - + +
104C ASP* 3.7 0.3 - - - -
105C LEU* 2.9 46.7 + - + +
107C TYR* 3.3 29.3 - + + +
108C PRO 3.6 18.4 - - - -
110C PRO* 3.8 14.1 - - + -
118C TRP* 4.2 17.3 - + - -
207C PHE* 3.3 28.9 - + + -
224C TRP* 4.4 2.0 - - + -
225C ARG* 3.2 39.6 - - - -
226C LEU* 3.5 20.3 + - + +
227C PRO* 3.7 5.5 - - - +
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Residues in contact with THR 102 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98C PHE 2.9 16.5 + - - +
99C ASP* 2.7 24.7 + - - -
101C TYR* 1.3 74.2 - - + +
103C ALA* 1.3 60.9 + - - +
105C LEU 2.4 20.9 - - - +
106C GLY* 4.6 1.6 - - - -
107C TYR 3.3 26.4 - - - +
108C PRO 3.7 1.1 - - - -
109C LEU* 3.5 35.8 - - + +
47I SER* 4.2 4.0 + - - -
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Residues in contact with ALA 103 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99C ASP 2.9 13.2 + - - +
100C GLU* 3.4 14.4 - - - +
102C THR* 1.3 78.2 + - - +
104C ASP* 1.3 65.3 + - - +
105C LEU 3.8 1.4 - - - +
205C ARG* 3.5 21.7 - - - +
47I SER* 2.9 36.1 + - - +
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Residues in contact with ASP 104 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100C GLU* 2.6 21.4 + - - +
101C TYR 3.8 2.2 - - - +
103C ALA* 1.3 75.7 - - - +
105C LEU* 1.3 63.8 + - + +
205C ARG* 3.1 35.9 + - - +
206C PRO* 4.9 0.2 - - + -
207C PHE* 3.1 19.9 + - + -
208C SER* 2.6 52.5 + - - -
47I SER* 5.3 0.5 - - - -
48I ASN* 5.1 5.9 + - - +
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Residues in contact with LEU 105 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101C TYR* 2.9 27.6 + - + +
102C THR 2.4 30.3 - - - +
103C ALA 3.8 1.2 - - - +
104C ASP* 1.3 82.4 - - + +
106C GLY* 1.3 56.4 + - - +
107C TYR* 2.8 48.4 + - + -
207C PHE* 4.1 6.1 - - + -
208C SER* 3.8 34.5 - - - +
211C ASN* 5.5 2.2 - - - +
224C TRP* 3.7 28.3 - - + -
47I SER* 5.0 0.6 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il