Contacts of the helix formed by residues 91 - 105 (chain I) in PDB entry 2ZHX
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 91 (chain I).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70I TYR* 3.5 47.6 - - + +
75I HIS* 4.6 4.0 - - - +
83I VAL* 3.9 21.3 - - + -
87I VAL* 4.4 7.2 - - + -
89I PRO 4.5 1.3 - - - +
90I TRP* 1.3 91.0 - - + +
92I ARG* 1.3 54.4 + - - +
94I LEU* 3.1 10.3 + - + +
95I ALA 2.7 29.6 + - - -
19J GLN* 3.3 24.8 - - + +
20J GLU* 4.0 7.4 - - - +
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Residues in contact with ARG 92 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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89I PRO* 5.2 1.4 - - - +
90I TRP* 2.6 37.5 + - - +
91I PRO* 1.3 68.2 - - - +
93I SER* 1.3 67.0 + - - +
95I ALA* 3.1 21.9 - - - +
96I ASN* 2.8 29.9 + - - -
194I PRO* 3.6 20.2 - - + -
19J GLN* 3.8 3.9 + - - +
20J GLU* 3.3 3.8 + - - +
45J THR* 3.9 15.9 - - + -
47J TYR* 3.1 62.1 - - + -
54J ASN* 3.1 32.0 + - - +
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Residues in contact with SER 93 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70I TYR* 5.0 4.3 - - - -
81I PHE* 4.4 12.3 - - - -
92I ARG* 1.3 67.1 - - - +
94I LEU* 1.3 57.3 + - - +
96I ASN* 3.1 3.3 + - - +
97I ILE* 2.8 32.9 + - - +
191I HIS* 3.0 29.7 - - - -
192I PRO* 3.8 16.7 - - - +
193I SER* 3.5 3.6 - - - +
194I PRO* 4.2 1.2 - - - +
20J GLU* 2.3 49.5 + - - -
22J ILE* 4.2 1.3 - - - +
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Residues in contact with LEU 94 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70I TYR* 4.2 4.9 + - - +
81I PHE 3.4 26.7 - - - +
83I VAL* 3.7 28.5 - - + -
90I TRP* 4.6 8.3 - - + -
91I PRO* 3.1 13.0 + - + +
93I SER* 1.3 73.9 - - - +
95I ALA* 1.3 68.6 + - - +
97I ILE* 3.4 19.2 - - + +
98I PHE* 2.9 55.1 + - + +
113I GLY* 3.8 17.3 - - - +
115I LEU* 4.2 12.8 - - + -
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Residues in contact with ALA 95 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90I TRP* 3.7 18.5 - - + +
91I PRO 2.7 11.2 + - - +
92I ARG* 3.0 44.6 + - - +
94I LEU* 1.3 74.9 - - - +
96I ASN* 1.3 66.1 + - - +
98I PHE* 3.3 5.4 + - - +
99I ASP* 3.0 24.7 + - - +
109I LEU* 5.5 0.3 - - - +
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Residues in contact with ASN 96 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92I ARG* 2.8 19.2 + - - +
93I SER 3.4 2.7 - - - +
95I ALA* 1.3 71.8 - - - +
97I ILE* 1.3 68.0 + - - +
99I ASP* 2.7 24.3 + - - +
100I GLU* 2.8 15.1 + - - +
192I PRO 2.7 30.3 + - - +
194I PRO* 3.5 28.6 - - - +
197I ALA* 3.6 5.3 - - - +
201I PHE* 3.9 4.8 - - + -
202I PHE* 3.7 24.9 - - + -
54J ASN* 5.4 3.8 + - - +
73J GLN* 5.5 0.6 + - - -
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Residues in contact with ILE 97 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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81I PHE* 3.7 30.3 - - + -
93I SER 2.8 24.6 + - - +
94I LEU* 3.1 18.1 + - + +
96I ASN* 1.3 74.5 - - - +
98I PHE* 1.3 57.5 + - + +
100I GLU* 3.1 3.5 + - - +
101I TYR* 2.8 34.2 + - - +
118I TRP* 4.6 11.7 - - + -
168I TRP* 3.6 29.6 - - + -
192I PRO* 3.5 17.7 - - + -
201I PHE* 3.7 11.9 - - + -
207I PHE* 3.7 25.0 - - + -
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Residues in contact with PHE 98 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90I TRP* 4.0 22.9 - + + -
94I LEU* 2.9 43.4 + - + -
95I ALA* 3.4 8.5 - - - +
97I ILE* 1.3 81.7 - - + +
99I ASP* 1.3 56.4 + - - +
101I TYR* 3.1 16.3 - + + +
102I THR* 2.8 30.0 + - - +
109I LEU* 4.1 8.1 - - + -
110I PRO* 3.5 33.9 - - + -
112I ASN 3.7 18.2 - - - -
113I GLY* 3.7 15.0 - - - -
115I LEU* 3.7 25.1 - - + -
118I TRP* 4.9 7.9 - + - -
226I LEU* 4.6 9.2 - - + -
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Residues in contact with ASP 99 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95I ALA* 3.0 17.0 + - - +
96I ASN* 2.7 25.4 + - - +
98I PHE* 1.3 69.4 - - - +
100I GLU* 1.3 65.6 + - - +
102I THR* 2.5 21.5 + - - -
103I ALA* 3.0 11.5 + - - +
109I LEU* 3.9 16.6 - - - +
202I PHE* 4.3 11.0 - - + -
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Residues in contact with GLU 100 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96I ASN 2.8 8.5 + - - -
97I ILE 3.6 3.6 - - - +
99I ASP* 1.3 73.0 - - - +
101I TYR* 1.3 51.7 + - - +
103I ALA* 3.1 5.9 + - - +
104I ASP* 2.5 39.3 + - - +
201I PHE* 3.5 35.2 - - + +
202I PHE* 3.5 14.3 - - + +
203I GLY* 2.9 24.8 + - - -
205I ARG* 3.0 49.8 + - - -
206I PRO* 3.8 22.0 - - + -
207I PHE* 4.8 0.7 - - + -
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Residues in contact with TYR 101 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97I ILE 2.8 13.1 + - - +
98I PHE* 3.1 20.4 - + + +
99I ASP 3.0 0.2 - - - -
100I GLU* 1.3 76.4 - - - +
102I THR* 1.3 75.9 + - + +
104I ASP* 3.8 0.5 - - - +
105I LEU* 2.9 55.3 + - + +
107I TYR* 3.2 33.6 - + + +
108I PRO 3.7 18.4 - - - -
110I PRO* 3.9 14.6 - - + -
118I TRP* 4.3 16.8 - + - -
207I PHE* 3.4 24.8 - + + -
224I TRP* 4.5 2.5 - - + -
225I ARG* 3.4 14.5 - - - -
226I LEU* 3.3 31.9 + - + +
227I PRO* 3.6 4.9 - - - +
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Residues in contact with THR 102 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98I PHE 2.8 11.5 + - - +
99I ASP* 2.5 30.1 + - - -
101I TYR* 1.3 79.9 - - + +
103I ALA* 1.3 55.0 + - - +
105I LEU 2.3 23.5 - - - +
106I GLY* 4.4 1.6 - - - -
107I TYR 3.4 24.4 - - - +
108I PRO 3.7 1.6 - - - -
109I LEU* 3.4 41.0 - - + +
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Residues in contact with ALA 103 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99I ASP 3.0 13.4 + - - +
100I GLU* 3.4 13.2 - - - +
102I THR* 1.3 77.5 + - - +
104I ASP* 1.3 66.5 + - - +
105I LEU 3.7 1.6 - - - +
205I ARG* 3.8 29.1 + - - +
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Residues in contact with ASP 104 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100I GLU* 2.5 21.8 + - - +
101I TYR 3.8 2.0 - - - +
103I ALA* 1.3 76.7 - - - +
105I LEU* 1.3 60.5 + - - +
205I ARG* 3.1 38.8 - - - +
207I PHE* 2.9 26.8 + - + +
208I SER* 2.5 49.5 + - - -
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Residues in contact with LEU 105 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101I TYR* 2.9 27.1 + - + +
102I THR 2.3 32.9 - - - +
103I ALA 3.7 1.7 - - - +
104I ASP* 1.3 75.3 - - - +
106I GLY* 1.3 57.9 + - - +
107I TYR* 3.1 45.5 + - + +
207I PHE* 3.9 11.0 - - + -
208I SER* 3.9 35.4 - - - +
211I ASN* 5.4 2.2 - - - +
224I TRP* 3.8 30.1 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il