Contacts of the helix formed by residues 1 - 26 (chain H) in PDB entry 2ZT9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 1 (chain H).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C VAL* 3.8 26.5 - - + -
41C LEU* 3.6 50.6 - - + +
44C THR* 3.8 28.9 - - + -
45C VAL 5.4 0.2 - - - +
46C PHE* 4.8 4.7 - - + -
2H ALA* 1.3 66.7 + - - +
3H ILE* 3.4 4.2 - - - +
4H LEU* 3.5 20.7 + - - +
5H THR* 3.5 14.4 + - - -
30H OPC 3.5 51.2 - - - -
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Residues in contact with ALA 2 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2E LEU* 4.2 24.2 - - + +
1H MET* 1.3 75.5 - - - +
3H ILE* 1.3 58.3 + - - +
5H THR* 3.0 7.0 + - - +
6H LEU* 2.9 38.4 + - + +
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Residues in contact with ILE 3 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41C LEU* 4.1 35.9 - - + -
252C ALA* 4.4 15.9 - - + +
255C VAL* 3.4 28.3 - - + +
256C GLY* 4.4 17.0 - - - +
259C ILE* 4.9 7.6 - - + -
1H MET 4.7 1.8 - - - +
2H ALA* 1.3 78.5 - - - +
4H LEU* 1.3 60.7 + - + +
6H LEU* 3.8 15.6 - - + +
7H GLY 2.9 24.1 + - - -
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Residues in contact with LEU 4 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57B LEU* 5.1 2.8 - - + +
39C SER* 3.4 40.8 - - - +
40C VAL* 3.9 3.4 - - - +
41C LEU* 4.2 20.6 - - + +
250C GLN* 3.7 33.9 - - + -
255C VAL* 4.7 6.1 - - + -
1H MET* 3.5 31.8 + - - +
2H ALA 3.2 1.2 - - - -
3H ILE* 1.3 83.8 - - + +
5H THR* 1.3 62.8 + - - +
7H GLY* 3.6 1.5 + - - -
8H TRP* 3.3 29.7 + - - -
30H OPC 4.2 19.1 - - - +
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Residues in contact with THR 5 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2E LEU* 4.4 17.0 - - + +
3E ALA* 4.0 37.9 - - + +
6E ALA* 6.0 0.2 - - + -
1H MET 3.5 9.7 + - - -
2H ALA 3.0 9.6 + - - -
4H LEU* 1.3 76.2 - - - +
6H LEU* 1.3 65.2 + - + +
7H GLY 3.1 1.7 + - - -
8H TRP* 3.3 6.4 + - - +
9H VAL* 3.0 27.2 + - + +
30H OPC 3.8 27.6 + - + +
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Residues in contact with LEU 6 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259C ILE* 3.3 19.9 - - + +
2E LEU* 5.3 11.0 - - + -
6E ALA* 3.7 29.2 - - + -
10E PHE* 5.5 4.2 - - + -
2H ALA* 2.9 28.6 + - + +
3H ILE* 3.4 15.7 + - + +
5H THR* 1.3 75.6 - - - +
7H GLY* 1.3 56.4 + - - +
9H VAL* 3.3 8.7 + - + +
10H SER* 3.0 23.9 + - - -
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Residues in contact with GLY 7 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57B LEU* 3.5 19.4 - - - +
255C VAL* 3.6 20.4 - - - -
258C LEU* 4.6 1.4 - - - +
259C ILE* 3.8 5.8 - - - +
3H ILE 2.9 16.6 + - - -
4H LEU 3.6 1.8 + - - -
5H THR 3.1 0.6 - - - -
6H LEU* 1.3 76.0 - - - +
8H TRP* 1.3 60.8 + - - +
10H SER* 2.6 22.1 + - - -
11H LEU 3.5 3.6 + - - -
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Residues in contact with TRP 8 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54B LEU* 4.5 2.9 - - + -
57B LEU* 3.5 43.2 - - + +
58B ASP* 4.3 5.8 - - + -
38C GLN* 2.9 41.7 + - + -
39C SER* 4.6 1.6 + - - -
5G LEU* 3.5 28.9 - - + -
4H LEU 3.3 21.7 + - - +
5H THR 3.3 7.0 + - - +
7H GLY* 1.3 71.6 - - - +
9H VAL* 1.3 65.8 + - - +
11H LEU* 3.2 36.5 + - + +
12H LEU* 3.2 19.2 + - - +
30H OPC 3.5 77.1 + - + -
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Residues in contact with VAL 9 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3E ALA* 3.9 33.9 - - + +
6E ALA* 4.0 15.5 - - + +
7E TYR* 3.8 29.8 - - + +
10E PHE* 4.3 9.0 - - + -
5H THR* 3.0 22.8 + - + +
6H LEU* 3.4 13.0 - - + +
7H GLY 3.2 0.2 - - - -
8H TRP* 1.3 75.8 - - - +
10H SER* 1.3 51.7 + - - +
12H LEU* 3.1 11.6 + - + +
13H VAL* 2.8 41.1 + - + +
30H OPC 5.2 5.8 - - + -
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Residues in contact with SER 10 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
258C LEU* 4.4 8.3 - - - +
259C ILE* 3.7 18.1 - - - +
262C VAL* 3.7 29.3 - - - +
10E PHE* 4.2 13.0 - - - -
6H LEU 3.0 11.7 + - - -
7H GLY* 2.6 21.4 + - - -
9H VAL* 1.3 73.8 - - - +
11H LEU* 1.3 60.6 + - - +
13H VAL* 3.7 7.1 - - - +
14H VAL* 2.9 31.4 + - - +
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Residues in contact with LEU 11 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50B CYS* 3.8 33.0 - - + +
53B ALA* 3.8 17.0 - - + +
54B LEU* 3.9 20.4 - - + +
57B LEU* 4.2 10.5 - - + -
7H GLY 3.5 0.4 + - - -
8H TRP* 3.2 39.4 + - + +
10H SER* 1.3 82.1 + - - +
12H LEU* 1.3 65.3 + - + +
14H VAL* 3.2 8.8 - - - +
15H PHE* 3.1 21.5 + - - +
30H OPC 3.8 35.9 - - + -
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Residues in contact with LEU 12 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7E TYR* 3.7 15.2 - - + -
11F LEU* 4.4 14.8 - - + -
15F LEU* 3.7 14.7 - - + +
8H TRP 3.3 13.9 - - - +
9H VAL* 3.1 11.3 + - + +
11H LEU* 1.3 78.3 - - + +
13H VAL* 1.3 60.9 + - - +
15H PHE* 3.9 6.0 - - - +
16H THR* 2.9 29.8 + - - -
30H OPC 3.5 89.5 - - + -
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Residues in contact with VAL 13 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266C MET* 3.4 27.4 - - + -
7E TYR* 3.8 25.8 - - + +
10E PHE* 3.7 43.1 - - + -
11E LEU* 3.8 19.3 - - + +
14E PHE* 5.7 0.9 - - + -
9H VAL* 2.8 21.4 + - + +
10H SER* 3.8 4.7 - - - +
11H LEU 3.2 0.4 - - - -
12H LEU* 1.3 74.5 - - - +
14H VAL* 1.3 52.9 + - - +
16H THR* 3.2 2.6 + - - -
17H TRP* 2.7 37.4 + - - +
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Residues in contact with VAL 14 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49B ALA* 4.0 29.4 - - + +
50B CYS* 4.7 9.6 - - - -
53B ALA* 5.1 0.2 - - + -
262C VAL* 3.6 32.8 - - + +
265C VAL* 4.3 9.0 - - + -
266C MET* 4.0 15.7 - - + -
269C GLN* 4.9 0.4 - - - +
10H SER 2.9 20.7 + - - +
11H LEU* 3.2 18.6 - - + +
13H VAL* 1.3 68.6 - - - +
15H PHE* 1.3 57.0 + - - +
17H TRP* 3.9 4.4 - - - +
18H SER* 2.7 45.2 + - - +
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Residues in contact with PHE 15 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50B CYS* 4.0 10.7 - - - -
12F SER* 3.9 16.6 - - - -
15F LEU* 4.0 25.6 - - + -
16F ILE* 4.1 20.0 - - + -
13G LEU* 3.9 24.9 - - + -
101G BCR 3.6 33.0 - - + -
11H LEU 3.1 17.7 + - - +
12H LEU* 3.9 4.7 - - - +
14H VAL* 1.3 78.8 - - - +
16H THR* 1.3 61.4 + - - +
18H SER* 3.3 3.7 + - - -
19H ILE* 3.2 27.1 + - + +
30H OPC 3.7 47.6 - - + -
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Residues in contact with THR 16 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7E TYR* 2.8 27.9 + - - +
11E LEU* 3.9 20.9 - - + -
15F LEU* 3.5 18.8 + - - +
18F VAL* 4.0 5.4 - - + +
19F GLY* 3.5 31.1 - - - +
22F LEU* 4.5 4.7 - - + -
12H LEU 2.9 15.4 + - - -
13H VAL 3.2 3.9 + - - -
15H PHE* 1.3 76.8 - - - +
17H TRP* 1.3 57.5 + - - +
19H ILE* 3.2 3.4 + - - +
20H ALA* 2.9 26.6 + - + +
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Residues in contact with TRP 17 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266C MET* 3.2 45.3 + - + +
269C GLN* 3.3 24.7 - - - -
270C VAL* 3.5 12.6 - - + -
11E LEU* 4.0 18.2 - - + -
14E PHE* 3.3 35.9 - + + -
15E THR* 3.7 25.4 - - - -
18E ALA* 4.0 8.1 - - + -
22F LEU* 4.3 10.1 - - + -
26F LEU* 5.3 4.0 - - + -
13H VAL 2.7 20.9 + - - +
14H VAL 3.9 2.7 - - - +
16H THR* 1.3 74.8 - - - +
18H SER* 1.3 56.6 + - - +
20H ALA* 3.6 9.9 - - + +
21H MET* 2.8 63.9 + - + +
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Residues in contact with SER 18 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42B ILE* 4.5 0.6 - - - +
46B GLY* 3.2 15.3 + - - -
50B CYS* 5.7 0.2 - - - -
269C GLN* 3.0 29.4 + - - +
101G BCR 3.8 27.1 - - - -
14H VAL* 2.7 27.6 + - - +
15H PHE* 3.6 6.5 - - - -
17H TRP* 1.3 71.3 - - - +
19H ILE* 1.3 68.3 + - - +
21H MET* 3.8 2.2 - - - +
22H VAL* 3.1 26.0 + - - +
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Residues in contact with ILE 19 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A ILE* 4.7 3.6 - - + -
16F ILE* 3.5 36.3 - - + +
19F GLY* 3.7 3.8 - - - -
20F TRP* 3.6 29.2 - - + +
101G BCR 3.6 53.6 - - + -
15H PHE* 3.2 18.4 + - + +
16H THR* 3.6 7.2 - - - +
18H SER* 1.3 73.1 - - - +
20H ALA* 1.3 69.3 + - - +
22H VAL* 2.9 15.1 + - - +
23H VAL* 3.0 20.7 + - + +
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Residues in contact with ALA 20 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19F GLY 3.3 20.8 + - - +
22F LEU* 4.2 14.1 - - + +
23F GLY* 3.7 13.8 - - - +
26F LEU* 5.9 1.6 - - + -
16H THR 2.9 18.3 + - - +
17H TRP* 3.6 20.6 - - + +
19H ILE* 1.3 73.4 - - - +
21H MET* 1.3 55.9 + - - +
23H VAL* 3.3 2.1 + - - +
24H TRP* 2.7 37.8 + - - +
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Residues in contact with MET 21 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42B ILE* 3.9 16.3 - - + +
269C GLN* 3.6 24.7 - - + +
270C VAL* 3.3 42.4 - - + -
273C VAL* 3.3 19.7 - - + +
26F LEU* 6.0 1.1 - - - -
17H TRP* 2.8 46.9 + - + +
18H SER* 3.8 5.2 - - - +
19H ILE 3.1 0.2 - - - -
20H ALA* 1.3 78.1 - - - +
22H VAL* 1.3 58.3 + - - +
24H TRP* 3.5 35.2 - - + -
25H GLY* 2.9 23.2 + - - -
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Residues in contact with VAL 22 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A ILE* 3.6 30.5 - - + -
303A HEM 5.0 2.0 - - + -
39B VAL* 4.8 8.6 - - + +
42B ILE* 4.0 12.8 - - + -
43B VAL* 3.8 27.6 - - + -
101G BCR 4.1 11.0 - - + -
18H SER 3.1 14.3 + - - +
19H ILE 2.9 7.2 + - - +
21H MET* 1.3 75.5 - - - +
23H VAL* 1.3 60.1 + - - +
24H TRP 3.3 0.2 + - - -
25H GLY 3.3 0.5 + - - -
26H ARG* 2.8 60.6 + - + +
29H LEU* 5.1 0.7 - - + -
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Residues in contact with VAL 23 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A ILE* 4.9 6.7 - - + -
20F TRP* 4.2 17.9 - - + +
23F GLY* 3.8 26.9 - - - +
24F ALA* 3.9 4.3 - - - +
27F LEU* 3.7 5.8 - - + +
19H ILE* 3.0 27.4 + - + +
20H ALA* 3.6 6.7 - - - +
22H VAL* 1.3 76.5 - - - +
24H TRP* 1.3 62.7 + - - +
27H ASN* 3.0 4.3 + - - -
28H GLY* 2.8 56.2 + - - +
29H LEU 4.0 13.5 - - - -
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Residues in contact with TRP 24 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270C VAL* 4.4 2.7 - - + -
273C VAL* 3.5 16.2 - - + -
274C LEU* 3.5 31.2 - - + -
277C LYS* 2.8 34.1 + - + +
18E ALA* 4.0 21.8 - - + -
22E LEU* 4.4 18.8 - - + -
23F GLY* 4.3 7.6 - - - +
26F LEU* 3.6 48.3 + - + -
27F LEU* 3.6 26.6 - - + +
30F GLN* 4.0 10.7 - - + -
20H ALA 2.7 21.2 + - - +
21H MET* 3.5 35.7 - - + +
23H VAL* 1.3 77.1 - - - +
25H GLY* 1.3 57.6 + - - +
27H ASN 3.2 6.6 + - - -
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Residues in contact with GLY 25 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39B VAL* 5.1 3.8 - - - -
42B ILE* 5.5 2.7 - - - -
273C VAL* 3.6 22.6 - - - +
276C LYS* 3.1 32.4 + - - +
277C LYS* 3.8 7.9 + - - -
21H MET 2.9 18.6 + - - -
22H VAL 3.8 0.2 - - - -
24H TRP* 1.3 76.9 - - - +
26H ARG* 1.3 56.8 + - - +
27H ASN* 3.4 4.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 26 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26A VAL* 4.0 16.6 - - - +
30A VAL 3.3 17.4 + - - -
31A ASN 3.9 7.7 - - - -
35A CYS* 5.5 0.4 - - - -
303A HEM 3.6 30.1 - - - +
29B GLU* 4.5 10.1 + - - +
35B ASP* 3.0 33.8 + - - +
39B VAL* 4.1 8.0 - - + +
276C LYS* 3.6 15.0 - - - +
22H VAL* 2.8 44.2 + - + +
25H GLY* 1.3 72.8 - - - +
27H ASN* 1.3 71.3 + - - +
28H GLY 3.5 2.6 + - - +
29H LEU* 3.3 38.8 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il