Contacts of the helix formed by residues 92 - 155 (chain B) in PDB entry 2ZXX
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 92 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91A PRO* 4.9 9.9 - - - -
81B GLU* 3.6 22.2 - - - -
84B ASP* 2.5 36.0 + - - -
91B PRO* 1.3 74.4 - - - +
93B SER* 1.3 67.7 + - - +
94B GLN* 3.6 12.5 + - - -
95B TYR* 2.7 28.6 + - - +
96B TRP* 3.2 6.3 + - - -
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Residues in contact with SER 93 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A GLU* 4.5 11.1 + - - -
90A ASN 4.1 3.5 + - - -
91A PRO* 3.4 37.0 + - - -
93A SER* 3.8 15.4 + - - -
96A TRP* 3.3 28.9 - - - +
97A LYS 5.6 0.4 - - - +
91B PRO 3.8 1.2 + - - -
92B SER* 1.3 70.5 - - - +
94B GLN* 1.3 65.6 + - - +
95B TYR 3.1 0.3 + - - -
96B TRP* 3.2 7.0 + - - +
97B LYS* 2.9 23.7 + - - +
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Residues in contact with GLN 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91A PRO* 5.4 7.8 - - + +
79B THR 4.9 0.3 - - - +
80B GLN* 3.4 31.2 - - + +
81B GLU* 2.8 52.2 + - - +
92B SER* 3.0 7.7 + - - -
93B SER* 1.3 80.8 + - - +
95B TYR* 1.3 64.5 + - - +
97B LYS* 3.6 10.8 - - - +
98B GLU* 3.5 14.9 + - - +
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Residues in contact with TYR 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80B GLN* 5.7 2.5 - - - -
84B ASP* 3.5 28.7 - - + +
91B PRO* 3.2 32.5 - - + -
92B SER* 2.7 21.9 + - - +
94B GLN* 1.3 69.0 - - - +
96B TRP* 1.3 87.3 + + - +
98B GLU* 2.8 17.8 + - - +
99B VAL* 3.2 26.7 + - + +
195C PRO* 3.6 21.1 - - + +
342C ARG* 3.5 23.9 - - + +
343C TRP 4.0 10.8 + - - -
345C PRO* 3.5 46.8 - - + +
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Residues in contact with TRP 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A TRP* 3.4 22.9 - - + +
97A LYS* 3.5 40.2 - - + +
100A ALA* 3.9 15.9 - - + +
101A GLU* 6.0 0.7 - - - -
90B ASN* 3.5 22.1 + - - -
91B PRO* 3.7 25.7 + - + +
92B SER 3.2 6.6 + - - -
93B SER* 3.7 6.3 - - - +
95B TYR* 1.3 91.4 - + - +
97B LYS* 1.3 68.0 + - - +
99B VAL* 2.7 26.8 + - + +
100B ALA 2.8 10.6 + - - -
103B ARG* 4.3 21.3 - - - -
195C PRO* 3.4 39.0 - - + -
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Residues in contact with LYS 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A GLU* 2.7 29.0 + - - +
96A TRP* 3.4 52.8 - - + +
103A ARG* 5.1 0.3 + - - -
93B SER 2.9 19.8 + - - +
94B GLN* 3.6 10.5 - - - +
96B TRP* 1.3 71.5 - - - +
98B GLU* 1.3 63.0 + - - +
100B ALA* 3.3 4.0 - - - +
101B GLU* 3.1 19.8 + - - +
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Residues in contact with GLU 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80B GLN* 3.4 18.9 + - - +
94B GLN 3.5 7.2 + - - +
95B TYR 2.8 13.2 + - - +
96B TRP 2.7 3.4 + - - -
97B LYS* 1.3 73.0 - - - +
99B VAL* 1.3 65.3 + - - +
101B GLU* 2.8 24.5 + - - +
102B GLN* 2.9 33.9 + - - +
345C PRO* 3.6 30.1 - - + +
346C ARG* 3.2 32.7 - - + +
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Residues in contact with VAL 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100A ALA* 4.4 0.7 - - + -
95B TYR* 3.2 44.6 + - + +
96B TRP* 2.7 23.2 + - + +
98B GLU* 1.3 72.7 - - - +
100B ALA* 1.3 53.0 + - - +
102B GLN* 2.9 13.1 + - - +
103B ARG* 2.7 74.1 + - + +
189C LEU* 5.4 7.0 - - + -
345C PRO* 4.3 9.4 - - + +
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Residues in contact with ALA 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A TRP* 4.1 16.2 - - + -
99A VAL* 4.5 0.2 - - + -
100A ALA* 3.9 25.1 - - + +
103A ARG* 3.0 34.1 + - - +
96B TRP 2.8 8.5 + - - +
97B LYS 3.3 12.3 - - - +
99B VAL* 1.3 76.9 - - - +
101B GLU* 1.3 55.8 + - - +
103B ARG* 3.8 3.8 - - - +
104B ARG 2.9 22.7 + - - -
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Residues in contact with GLU 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A ARG* 3.7 6.6 + - - +
97B LYS 3.1 11.4 + - - +
98B GLU* 2.8 23.3 + - - +
100B ALA* 1.3 71.6 - - - +
102B GLN* 1.3 72.2 + - - +
104B ARG* 2.8 59.5 + - - +
105B LYS* 2.9 33.7 + - - +
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Residues in contact with GLN 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B GLU* 2.9 33.8 + - - +
99B VAL* 2.9 10.0 + - - +
101B GLU* 1.3 80.9 - - - +
103B ARG* 1.3 61.8 + - - +
105B LYS* 3.3 20.2 + - - +
106B ALA* 3.0 20.4 + - - +
189C LEU* 4.1 25.1 - - + +
345C PRO 3.5 23.6 - - - +
346C ARG* 4.0 13.7 + - - +
348C ASN* 6.0 4.4 - - - +
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Residues in contact with ARG 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100A ALA* 2.9 38.7 + - - +
101A GLU* 4.1 3.0 + - - +
103A ARG* 4.3 12.6 - - + +
104A ARG* 3.4 39.6 - - - +
107A LEU* 4.6 6.0 - - + +
96B TRP* 4.3 11.7 - - - -
99B VAL* 2.7 45.7 + - + +
100B ALA 3.8 3.8 - - - +
102B GLN* 1.3 72.1 - - - +
104B ARG* 1.3 51.8 + - - +
106B ALA* 2.7 14.7 + - - +
107B LEU* 2.6 35.4 + - - +
188C ALA 5.4 0.8 + - - -
189C LEU* 2.8 38.0 + - + +
191C GLN 4.5 6.3 + - - -
195C PRO* 6.3 0.6 - - - +
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Residues in contact with ARG 104 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A ARG* 3.4 36.5 - - - +
100B ALA 2.9 22.3 + - - +
101B GLU* 2.8 42.8 + - - +
103B ARG* 1.3 73.2 - - - +
105B LYS* 1.3 79.4 + - - +
107B LEU* 4.0 10.0 - - + +
108B TYR* 3.4 25.7 + - + +
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Residues in contact with LYS 105 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101B GLU* 2.9 37.4 + - + +
102B GLN* 3.8 21.3 + - - +
104B ARG* 1.3 94.3 - - - +
106B ALA* 1.3 64.9 + - - +
108B TYR* 2.8 16.9 + - - +
109B GLU* 2.9 21.3 + - + +
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Residues in contact with ALA 106 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107A LEU* 3.7 24.5 - - + -
102B GLN 3.0 13.3 + - - +
103B ARG* 2.7 15.6 + - - +
105B LYS* 1.3 71.8 - - - +
107B LEU* 1.3 64.9 + - - +
108B TYR 2.8 0.7 + - - -
109B GLU* 3.1 0.9 + - - +
110B ALA* 2.8 25.4 + - - +
186C PHE* 3.7 36.4 - - + -
189C LEU* 4.1 5.6 - - + -
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Residues in contact with LEU 107 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103A ARG* 4.8 13.9 - - + +
106A ALA* 3.7 28.0 - - + +
107A LEU* 3.4 33.1 - - + +
110A ALA* 4.0 9.0 - - + -
103B ARG 2.6 17.8 + - - +
104B ARG* 4.0 11.2 - - + +
106B ALA* 1.3 72.8 - - - +
108B TYR* 1.3 61.3 + - - +
110B ALA* 3.9 0.9 - - - -
111B LEU* 3.1 45.9 + - + +
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Residues in contact with TYR 108 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104B ARG* 3.4 18.3 + - + +
105B LYS* 2.8 11.5 + - - +
106B ALA 2.8 1.2 + - - -
107B LEU* 1.3 77.0 - - - +
109B GLU* 1.3 82.5 + - + +
110B ALA 3.0 0.5 + - - -
111B LEU* 3.1 5.2 + - - +
112B LYS* 3.0 60.8 + - + +
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Residues in contact with GLU 109 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105B LYS* 2.9 20.5 + - + +
106B ALA 3.8 2.2 - - - +
108B TYR* 1.3 94.4 - - + +
110B ALA* 1.3 61.6 + - - +
112B LYS* 3.6 18.2 + - - +
113B GLU* 3.1 21.3 + - - +
185C ARG* 4.0 18.2 + - - +
186C PHE* 3.9 21.5 - - + -
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Residues in contact with ALA 110 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A LEU* 4.5 4.5 - - + -
110A ALA* 4.5 9.4 - - + +
111A LEU* 4.2 24.7 - - + -
114A ASN* 4.6 0.2 + - - -
106B ALA 2.8 18.4 + - - +
107B LEU* 3.8 6.3 - - - +
109B GLU* 1.3 75.7 - - - +
111B LEU* 1.3 58.6 + - - +
113B GLU* 2.7 23.2 + - - +
114B ASN* 3.0 18.2 + - - +
182C ALA* 4.2 14.8 - - + -
186C PHE* 4.3 3.7 - - + -
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Residues in contact with LEU 111 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110A ALA* 4.5 11.4 - - + -
107B LEU* 3.1 42.6 + - + +
108B TYR* 3.7 4.0 - - - +
110B ALA* 1.3 80.1 - - - +
112B LYS* 1.3 60.3 + - - +
114B ASN* 3.6 12.6 + - + +
115B GLU* 3.2 22.3 + - + +
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Residues in contact with LYS 112 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108B TYR* 3.0 53.6 + - + +
109B GLU* 3.6 20.1 + - - +
111B LEU* 1.3 76.8 - - - +
113B GLU* 1.3 61.2 + - - +
115B GLU* 3.4 18.2 - - - +
116B LYS* 3.2 19.2 + - - +
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Residues in contact with GLU 113 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114A ASN* 2.5 26.5 + - - +
118A HIS* 3.1 15.7 - - - -
109B GLU 3.1 12.5 + - - +
110B ALA* 2.7 11.5 + - - +
112B LYS* 1.3 72.8 - - - +
114B ASN* 1.3 54.5 + - - +
115B GLU 3.0 1.3 - - - -
116B LYS* 2.8 24.8 + - - +
117B LEU* 2.6 41.9 + - + +
180C ALA 4.7 0.2 - - - +
181C PRO* 4.5 1.9 - - - +
182C ALA* 3.0 17.6 + - - +
185C ARG* 3.3 25.5 + - - -
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Residues in contact with ASN 114 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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110A ALA* 3.2 28.0 + - - +
113A GLU* 3.3 24.2 + - - +
114A ASN* 3.0 29.2 + - - +
117A LEU* 3.7 18.3 - - + +
110B ALA 3.0 11.1 + - - +
111B LEU* 3.6 14.9 - - + +
113B GLU* 1.3 72.8 - - - +
115B GLU* 1.3 56.7 + - - +
117B LEU* 2.9 6.9 + - - +
118B HIS* 2.8 39.4 + - + -
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Residues in contact with GLU 115 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B LEU* 3.2 11.2 + - + +
112B LYS* 3.4 22.0 - - - +
113B GLU 3.0 0.4 - - - -
114B ASN* 1.3 75.7 - - - +
116B LYS* 1.3 68.0 + - - +
117B LEU 2.8 1.6 + - - -
118B HIS* 2.8 21.1 + - - +
119B LYS* 3.2 11.0 + - - +
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Residues in contact with LYS 116 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112B LYS 3.2 10.2 + - - +
113B GLU* 2.8 28.5 + - - +
115B GLU* 1.3 77.6 + - - +
117B LEU* 1.3 73.9 + - - +
119B LYS* 3.4 11.1 + - + +
120B GLU* 3.4 42.8 + - + +
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Residues in contact with LEU 117 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114A ASN* 4.2 12.1 - - - +
117A LEU* 3.9 30.1 - - + -
118A HIS* 3.6 43.1 - - + +
121A ILE* 3.8 10.9 - - + +
113B GLU* 2.6 21.4 + - + +
114B ASN* 3.3 9.9 - - - +
115B GLU 2.8 1.8 + - - -
116B LYS* 1.3 90.3 - - - +
118B HIS* 1.3 64.4 + - - +
120B GLU* 2.9 34.3 + - - +
121B ILE* 3.1 17.9 + - + +
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Residues in contact with HIS 118 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113A GLU* 3.8 20.8 + - - -
117A LEU* 3.4 33.4 - - + +
114B ASN* 2.8 24.1 + - + -
115B GLU* 2.8 12.6 + - - +
117B LEU* 1.3 74.9 - - - +
119B LYS* 1.3 63.8 + - - +
121B ILE* 3.5 9.6 + - + +
122B GLU* 3.0 24.1 + - - +
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Residues in contact with LYS 119 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115B GLU 3.2 6.5 + - - +
116B LYS* 3.5 15.9 - - + +
117B LEU 3.1 0.2 - - - -
118B HIS* 1.3 79.9 - - - +
120B GLU* 1.3 55.8 + - - +
122B GLU* 3.1 15.6 + - + +
123B GLN* 2.9 50.1 + - + +
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Residues in contact with GLU 120 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A ILE* 3.1 26.7 - - + +
116B LYS* 3.4 28.9 + - + +
117B LEU* 2.9 20.6 + - - +
119B LYS* 1.3 75.0 - - - +
121B ILE* 1.3 55.8 + - - +
122B GLU 3.0 1.1 - - - -
123B GLN* 3.0 20.8 + - - +
124B LYS* 2.7 53.6 + - - +
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Residues in contact with ILE 121 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A LEU* 3.8 38.6 - - + +
120A GLU* 3.4 26.7 - - + +
121A ILE* 3.7 19.9 - - + +
124A LYS* 3.6 25.6 - - + +
117B LEU 3.1 12.9 + - - +
118B HIS* 3.8 11.0 - - + +
120B GLU* 1.3 73.9 - - - +
122B GLU* 1.3 57.8 + - - +
124B LYS* 4.0 8.3 - - - -
125B ASP* 3.1 32.4 + - - +
116D LYS* 4.6 11.9 - - - +
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Residues in contact with GLU 122 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B HIS 3.0 15.1 + - - +
119B LYS* 3.3 17.0 - - - +
120B GLU 3.0 0.4 - - - -
121B ILE* 1.3 76.0 - - - +
123B GLN* 1.3 67.7 + - + +
125B ASP* 3.3 5.0 + - - +
126B SER* 3.2 20.8 + - - -
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Residues in contact with GLN 123 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119B LYS* 2.9 52.4 + - + +
120B GLU* 3.0 22.1 + - - +
122B GLU* 1.3 77.7 - - + +
124B LYS* 1.3 58.5 + - + +
126B SER* 3.0 10.3 + - - -
127B GLU* 3.0 26.9 + - - +
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Residues in contact with LYS 124 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A ILE* 3.8 22.7 - - + -
124A LYS* 4.2 23.3 - - + -
125A ASP* 2.9 30.4 + - - +
128A ILE* 3.7 21.7 - - + +
120B GLU* 2.7 43.6 + - - +
121B ILE* 4.3 2.0 - - - +
123B GLN* 1.3 72.6 - - + +
125B ASP* 1.3 62.5 + - - +
127B GLU* 4.4 1.6 - - - +
128B ILE* 3.0 32.8 + - - +
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Residues in contact with ASP 125 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A LYS* 2.8 42.4 + - - +
121B ILE* 3.1 29.7 + - - +
122B GLU* 3.8 5.8 - - - +
123B GLN 3.2 0.2 - - - -
124B LYS* 1.3 76.5 - - - +
126B SER* 1.3 59.0 + - - +
128B ILE* 3.6 11.2 + - - +
129B ALA* 3.1 26.0 + - - +
116D LYS* 4.0 12.1 + - - +
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Residues in contact with SER 126 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B GLU 3.2 11.3 + - - -
123B GLN* 3.0 13.4 + - - -
125B ASP* 1.3 76.8 - - - +
127B GLU* 1.3 59.9 + - - +
129B ALA* 3.2 7.2 + - - +
130B ARG* 2.9 30.4 + - - +
112D LYS* 5.7 2.6 + - - -
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Residues in contact with GLU 127 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A ILE* 3.2 26.9 - - + +
132A ARG* 2.6 50.6 + - - +
123B GLN 3.0 14.7 + - - +
124B LYS* 4.0 4.5 - - - +
126B SER* 1.3 77.4 - - - +
128B ILE* 1.3 60.6 + - - +
130B ARG* 2.7 33.8 + - - +
131B LEU* 3.2 31.0 + - + +
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Residues in contact with ILE 128 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A LYS* 3.8 32.1 - - + +
127A GLU* 3.9 26.5 - - + +
128A ILE* 3.5 18.4 - - + +
131A LEU* 4.1 17.6 - - + +
124B LYS 3.0 22.2 + - - +
125B ASP* 3.7 13.0 - - - +
127B GLU* 1.3 75.9 - - - +
129B ALA* 1.3 63.8 + - - +
131B LEU* 3.1 3.0 + - - +
132B ARG* 3.0 37.0 + - + +
----------------------------------------------------------
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Residues in contact with ALA 129 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B ASP 3.1 14.9 + - - +
126B SER* 3.2 11.0 + - - +
128B ILE* 1.3 74.8 - - - +
130B ARG* 1.3 54.4 + - - +
131B LEU 2.7 16.3 + - - -
132B ARG* 3.3 6.9 + - - +
133B LYS* 3.1 22.1 + - - +
112D LYS* 6.0 5.6 - - - +
----------------------------------------------------------
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Residues in contact with ARG 130 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132A ARG* 4.0 16.2 - - - +
126B SER 2.9 18.0 + - - +
127B GLU* 2.7 45.8 + - - +
129B ALA* 1.3 70.8 - - - +
131B LEU* 1.3 79.7 + - - +
133B LYS* 4.6 7.4 - - - +
134B GLU* 3.2 37.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 131 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A ILE* 4.9 2.9 - - + +
131A LEU* 3.8 35.7 - - + +
132A ARG* 3.9 27.1 - - + +
135A ASN* 4.2 21.1 - - + +
127B GLU* 3.2 24.6 + - + +
128B ILE* 3.5 4.3 - - - +
129B ALA 2.7 3.2 + - - -
130B ARG* 1.3 113.5 - - - +
132B ARG* 1.3 66.9 + - - +
133B LYS 3.0 1.1 - - - -
134B GLU* 4.2 6.7 - - - +
135B ASN* 2.8 32.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 132 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127A GLU* 4.9 7.0 - - - -
131A LEU* 3.9 24.8 - - + +
134A GLU* 5.8 0.2 - - - -
128B ILE* 3.0 29.7 + - + +
129B ALA* 4.0 6.2 - - - +
131B LEU* 1.3 74.8 - - - +
133B LYS* 1.3 56.6 + - - +
135B ASN* 3.9 5.1 - - - +
136B LYS* 3.1 28.9 + - - +
240F MSE 4.9 3.4 + - - -
241F ARG* 5.3 19.7 - - - +
242F LYS* 4.1 29.9 - - - +
----------------------------------------------------------
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Residues in contact with LYS 133 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B ALA 3.1 17.1 + - - +
130B ARG* 4.5 6.5 - - - -
131B LEU 3.0 0.6 - - - -
132B ARG* 1.3 76.8 - - - +
134B GLU* 1.3 66.1 + - - +
136B LYS* 3.2 7.1 + - + +
137B ASP* 3.1 46.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 134 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A ASN* 3.0 27.0 + - - +
130B ARG* 3.2 38.5 + - - +
131B LEU* 3.3 9.7 + - - +
133B LYS* 1.3 79.7 - - - +
135B ASN* 1.3 64.0 + - - +
137B ASP* 3.3 6.4 + - - +
138B LEU* 3.1 37.1 + - + +
----------------------------------------------------------
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Residues in contact with ASN 135 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131A LEU* 3.3 21.1 - - - +
134A GLU* 3.0 40.9 - - - +
135A ASN* 2.8 42.5 + - - +
138A LEU* 3.7 16.1 - - + +
131B LEU 2.8 20.6 + - - +
132B ARG* 3.9 4.5 - - - +
134B GLU* 1.3 78.2 - - - +
136B LYS* 1.3 60.0 + - - +
138B LEU* 3.6 1.6 + - - +
139B ALA* 3.1 22.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 136 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132B ARG 3.1 20.0 + - - +
133B LYS* 3.2 8.2 + - + +
135B ASN* 1.3 76.9 - - - +
137B ASP* 1.3 68.3 + - - +
139B ALA* 3.2 9.8 + - - +
140B GLU* 3.0 31.1 + - + +
208F GLU* 5.1 15.2 + - - +
211F ARG* 4.3 27.3 + - - +
----------------------------------------------------------
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Residues in contact with ASP 137 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133B LYS* 3.1 40.6 + - - +
134B GLU* 3.7 5.5 - - - +
136B LYS* 1.3 87.1 - - - +
138B LEU* 1.3 60.7 + - + +
140B GLU* 3.1 14.6 + - - +
141B VAL* 2.8 33.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 138 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A ASN* 4.9 10.3 - - - +
138A LEU* 3.6 48.0 - - + +
141A VAL* 3.8 14.7 - - + +
142A ALA* 4.1 14.4 - - + -
145A VAL* 3.8 29.8 - - + -
134B GLU* 3.1 28.1 + - + +
136B LYS 3.2 0.2 - - - -
137B ASP* 1.3 76.6 - - + +
139B ALA* 1.3 67.4 + - - +
140B GLU 2.9 1.6 - - - -
141B VAL* 2.8 5.7 + - + +
142B ALA* 2.7 26.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 139 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134A GLU* 6.1 0.4 - - - +
138A LEU* 4.3 9.4 - - + +
135B ASN 3.1 15.3 + - - +
136B LYS* 3.3 11.4 - - - +
138B LEU* 1.3 76.5 - - - +
140B GLU* 1.3 61.0 + - - +
142B ALA* 3.5 7.1 + - - +
143B GLU* 3.2 28.8 + - - +
211F ARG* 3.4 19.7 - - - +
----------------------------------------------------------
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Residues in contact with GLU 140 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B LYS* 3.0 17.1 + - + +
137B ASP* 3.4 17.4 - - - +
138B LEU 2.9 1.0 - - - -
139B ALA* 1.3 73.7 - - - +
141B VAL* 1.3 66.1 + - - +
143B GLU* 3.3 7.8 + - - +
144B HIS* 3.0 44.8 + - + -
211F ARG* 4.5 4.0 - - - +
307F ARG* 3.6 29.4 + - - +
----------------------------------------------------------
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Residues in contact with VAL 141 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141A VAL* 4.0 15.9 - - + +
144A HIS* 4.2 24.2 - - + -
145A VAL* 4.3 13.7 - - + -
137B ASP* 2.8 23.0 + - + +
138B LEU* 2.8 13.9 + - + +
140B GLU* 1.3 76.3 - - - +
142B ALA* 1.3 66.2 + - - +
143B GLU 3.1 0.2 + - - -
144B HIS* 3.2 5.5 + - - +
145B VAL* 3.0 24.3 + - + +
----------------------------------------------------------
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Residues in contact with ALA 142 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138A LEU* 5.5 4.5 - - + -
141A VAL* 4.4 17.0 - - + +
138B LEU 2.7 19.1 + - - +
139B ALA* 3.7 7.9 - - - +
141B VAL* 1.3 73.8 - - - +
143B GLU* 1.3 62.2 + - + +
145B VAL* 3.5 7.6 + - - +
146B GLN* 3.1 36.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 143 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139B ALA 3.2 15.9 + - - +
140B GLU* 3.6 11.4 - - - +
141B VAL 3.1 0.8 - - - -
142B ALA* 1.3 74.2 - - + +
144B HIS* 1.3 73.5 + - + +
146B GLN* 3.2 14.5 + - - +
147B TYR* 3.0 22.4 + - - +
211F ARG* 4.0 12.2 + - - -
215F THR* 4.4 8.7 + - - +
300F ALA* 4.3 3.2 - - + +
303F LEU* 3.7 18.6 - - + +
304F LEU* 4.5 8.6 - - + +
307F ARG* 2.3 41.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS 144 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140B GLU* 3.0 48.9 + - + +
141B VAL* 4.0 4.9 - - - +
143B GLU* 1.3 81.2 - - + +
145B VAL* 1.3 61.6 + - - +
147B TYR* 3.1 12.9 + - + +
148B MSE 2.9 28.1 + - + +
304F LEU* 3.6 38.0 - - + +
307F ARG* 4.7 3.2 + - - -
----------------------------------------------------------
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Residues in contact with VAL 145 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144A HIS* 3.8 36.6 - - + +
141B VAL* 3.0 16.9 + - + +
142B ALA* 3.6 11.2 - - - +
144B HIS* 1.3 76.1 - - - +
146B GLN* 1.3 64.7 + - + +
148B MSE 3.0 17.1 + - - +
149B ALA* 3.0 15.6 + - + +
----------------------------------------------------------
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Residues in contact with GLN 146 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142B ALA* 3.1 26.9 + - - +
143B GLU* 3.5 17.7 - - - +
145B VAL* 1.3 78.3 - - + +
147B TYR* 1.3 61.7 + - - +
149B ALA* 3.5 8.4 + - - +
150B GLU* 3.4 24.0 + - - +
300F ALA* 3.7 16.4 - - + +
----------------------------------------------------------
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Residues in contact with TYR 147 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143B GLU 3.0 12.9 + - - +
144B HIS* 3.5 17.5 - - - +
145B VAL 3.1 0.2 - - - -
146B GLN* 1.3 75.8 - - - +
148B MSE 1.3 97.1 + - + +
150B GLU* 3.4 5.7 + - - +
151B VAL* 3.1 38.9 + - + +
300F ALA* 3.6 18.4 - - + +
301F THR* 3.4 38.4 - - + -
304F LEU* 4.3 28.3 - - + -
305F GLN* 5.9 1.6 - - + -
308F GLN* 6.2 0.2 - - - -
----------------------------------------------------------
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Residues in contact with MSE 148 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144B HIS* 2.9 18.0 + - + +
145B VAL* 3.0 9.6 + - - +
147B TYR* 1.3 104.5 - - + +
149B ALA* 1.3 55.2 + - - +
150B GLU 2.9 4.0 - - - -
151B VAL* 2.8 20.2 + - + +
152B ILE* 2.7 47.3 + - + +
----------------------------------------------------------
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Residues in contact with ALA 149 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145B VAL* 3.0 12.8 + - + +
146B GLN* 3.6 13.2 - - - +
148B MSE 1.3 76.3 - - - +
150B GLU* 1.3 57.0 + - + +
152B ILE* 3.6 10.3 - - - +
153B GLU* 3.0 29.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 150 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146B GLN* 3.4 9.9 + - - +
147B TYR 3.5 9.2 - - - +
148B MSE 2.9 0.6 - - - -
149B ALA* 1.3 78.6 - - + +
151B VAL* 1.3 63.7 + - - +
153B GLU* 3.9 12.8 - - - +
154B ARG* 3.3 30.7 + - - +
299F THR* 3.4 15.9 + - - +
300F ALA* 3.1 31.3 + - - +
301F THR* 2.6 38.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 151 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147B TYR* 3.1 48.4 + - + +
148B MSE 2.8 21.1 + - + +
150B GLU* 1.3 73.7 - - - +
152B ILE* 1.3 71.8 + - + +
154B ARG* 3.0 41.1 + - - +
155B LEU* 3.3 28.1 + - + +
301F THR* 5.0 1.6 - - - +
----------------------------------------------------------
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Residues in contact with ILE 152 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148B MSE 2.7 39.2 + - + +
149B ALA* 3.6 9.2 - - - +
151B VAL* 1.3 74.4 - - + +
153B GLU* 1.3 70.5 + - - +
155B LEU* 3.3 32.6 + - + +
156B SER 4.2 5.3 - - - +
----------------------------------------------------------
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Residues in contact with GLU 153 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149B ALA 3.0 17.1 + - - +
150B GLU* 3.9 13.5 - - - +
151B VAL 3.3 0.2 - - - -
152B ILE* 1.3 83.1 - - - +
154B ARG* 1.3 66.1 + - + +
156B SER* 3.1 17.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG 154 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150B GLU 3.3 14.8 + - - +
151B VAL* 3.0 39.9 + - - +
153B GLU* 1.3 78.8 - - + +
155B LEU* 1.3 56.3 + - - +
156B SER* 2.6 19.8 + - - -
301F THR* 5.5 8.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 155 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151B VAL* 3.6 29.2 - - + +
152B ILE* 3.5 23.3 - - + +
154B ARG* 1.3 78.5 - - - +
156B SER* 1.3 67.6 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il