Contacts of the helix formed by residues 42 - 71 (chain X) in PDB entry 3A68


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with VAL 42 (chain X).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38X  ARG*     3.5     3.1    +      -       -      +
     40X  LYS*     4.3     4.5    +      -       -      +
     41X  TYR*     1.3    80.3    -      -       -      +
     43X  ASP*     1.3    66.0    +      -       -      +
     44X  GLU*     3.9     4.9    -      -       +      +
     45X  SER*     3.0    28.0    +      -       -      +
     46X  GLU*     3.1    10.0    +      -       -      +
    157X  ASN*     3.7    39.5    -      -       +      +
    159X  ASP*     4.9     0.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 43 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38X  ARG*     3.0    24.3    +      -       -      +
     42X  VAL*     1.3    74.1    -      -       -      +
     44X  GLU*     1.3    58.5    +      -       -      +
     46X  GLU*     3.3    13.1    +      -       -      +
     47X  SER*     2.8    35.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 44 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42X  VAL*     3.2     5.4    -      -       +      +
     43X  ASP*     1.3    78.4    -      -       -      +
     45X  SER*     1.3    57.3    +      -       -      +
     47X  SER*     3.5     6.4    +      -       -      -
     48X  ALA*     3.0    26.7    +      -       -      +
    153X  VAL*     3.7    19.4    -      -       +      +
    156X  LYS*     3.1    34.7    +      -       -      +
    157X  ASN*     3.0    25.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 45 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41X  TYR*     4.0    16.6    -      -       -      -
     42X  VAL*     3.0    23.9    +      -       -      +
     44X  GLU*     1.3    74.3    -      -       -      +
     46X  GLU*     1.3    67.5    +      -       -      +
     48X  ALA*     3.2     3.0    +      -       -      +
     49X  VAL*     2.9    28.1    +      -       -      +
    153X  VAL*     4.1    11.1    +      -       -      +
    157X  ASN*     3.9    14.7    +      -       -      +
    159X  ASP*     4.2     7.5    +      -       -      +
    162X  LEU*     3.8    23.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 46 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38X  ARG*     3.7    25.3    +      -       -      +
     41X  TYR*     3.7    20.7    -      -       +      -
     42X  VAL      3.1    11.5    +      -       -      +
     43X  ASP*     3.5    18.2    -      -       -      +
     45X  SER*     1.3    77.3    -      -       -      +
     47X  SER*     1.3    63.8    +      -       -      +
     49X  VAL      3.3     0.2    +      -       -      -
     50X  ASN*     3.1    12.5    +      -       -      +
    102X  GLN*     3.0    38.4    +      -       -      +
    107X  GLY*     3.4     5.0    -      -       -      -
    108X  LYS*     2.7    38.4    +      -       -      +
    110X  LYS*     5.4     2.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 47 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43X  ASP*     2.8    21.3    +      -       -      +
     44X  GLU*     3.7     8.2    -      -       -      -
     46X  GLU*     1.3    76.8    +      -       -      +
     48X  ALA*     1.3    57.0    +      -       -      +
     50X  ASN*     3.2    10.8    +      -       -      +
     51X  GLU*     2.9    27.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 48 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44X  GLU*     3.0    18.5    +      -       +      +
     45X  SER      3.2     3.3    +      -       -      +
     47X  SER*     1.3    73.2    -      -       -      +
     49X  VAL*     1.3    65.9    +      -       -      +
     51X  GLU*     3.3     8.3    +      -       -      +
     52X  GLN*     3.0    22.5    +      -       -      +
    150X  LEU*     3.6    24.6    -      -       +      +
    153X  VAL*     3.9    25.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 49 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41X  TYR*     3.2    21.8    -      -       -      +
     45X  SER      2.9    16.5    +      -       -      +
     46X  GLU      3.7     4.7    -      -       -      +
     48X  ALA*     1.3    77.3    -      -       -      +
     50X  ASN*     1.3    62.1    +      -       -      +
     52X  GLN*     3.2     5.5    +      -       -      +
     53X  ILE*     3.0    24.7    +      -       +      +
     98X  LEU*     3.8    33.6    -      -       +      +
    101X  TYR*     4.6     4.7    -      -       +      -
    102X  GLN*     3.7    20.0    -      -       +      +
    150X  LEU*     4.2    11.4    -      -       +      -
    162X  LEU*     4.0    25.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 50 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     46X  GLU*     3.1    15.6    +      -       -      +
     47X  SER*     3.2    11.5    +      -       -      +
     49X  VAL*     1.3    76.8    -      -       -      +
     51X  GLU*     1.3    60.5    +      -       -      +
     53X  ILE*     3.4    15.1    +      -       -      +
     54X  ASN*     3.2    17.8    +      -       -      +
    102X  GLN*     3.0    18.5    +      -       -      +
    108X  LYS      3.1    21.0    +      -       -      -
    109X  VAL*     3.4     4.0    -      -       -      -
    110X  LYS*     3.1    47.8    +      -       +      +
    112X  GLN*     3.7    14.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 51 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15H  PHE*     3.8    25.3    +      -       -      +
     47X  SER      2.9    12.5    +      -       -      +
     48X  ALA*     3.5    12.6    -      -       -      +
     49X  VAL      3.2     0.2    -      -       -      -
     50X  ASN*     1.3    77.9    -      -       -      +
     52X  GLN*     1.3    57.2    +      -       -      +
     54X  ASN*     3.2     7.3    +      -       -      +
     55X  VAL*     3.0    32.0    +      -       +      +
    112X  GLN*     3.4    23.2    +      -       -      +
    146X  LYS*     5.7     6.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 52 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     48X  ALA      3.0    16.0    +      -       -      +
     49X  VAL      3.2     4.2    +      -       -      +
     51X  GLU*     1.3    72.7    -      -       -      +
     53X  ILE*     1.3    66.2    +      -       -      +
     55X  VAL*     3.2    19.6    +      -       -      +
     56X  GLU*     2.9    49.7    +      -       -      +
     98X  LEU*     3.6    20.6    -      -       +      -
    143X  THR*     3.9     5.3    +      -       -      +
    146X  LYS*     3.4    29.5    -      -       -      +
    147X  LEU*     3.5    30.1    -      -       +      +
    150X  LEU*     3.9    17.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 53 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49X  VAL*     3.0    24.5    +      -       +      +
     50X  ASN*     3.5    26.0    -      -       -      +
     52X  GLN*     1.3    76.0    -      -       -      +
     54X  ASN*     1.3    60.1    +      -       -      +
     56X  GLU*     3.4     3.2    +      -       -      +
     57X  TYR*     2.9    29.7    +      -       +      +
     95X  ALA*     3.9     9.5    -      -       +      +
     98X  LEU*     3.5    29.2    -      -       +      +
     99X  MET*     3.7    37.9    -      -       +      +
    102X  GLN*     4.8     0.4    -      -       +      -
    109X  VAL*     4.4     8.3    -      -       +      -
    110X  LYS      5.9     1.1    -      -       -      +
    111X  LEU*     3.7    29.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 54 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15H  PHE*     4.0    18.7    +      -       -      +
     61J  TYR*     4.2     6.4    +      -       -      -
     50X  ASN      3.2     6.3    +      -       -      +
     51X  GLU*     3.2    10.8    +      -       -      +
     52X  GLN      3.2     0.2    -      -       -      -
     53X  ILE*     1.3    78.6    -      -       -      +
     55X  VAL*     1.3    64.1    +      -       -      +
     57X  TYR*     4.4     3.4    -      -       -      -
     58X  ASN*     2.9    48.7    +      -       -      +
    112X  GLN*     3.5    48.4    +      -       +      +
    113X  SER      3.1    25.9    +      -       -      +
    114X  ILE*     4.3     2.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 55 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15H  PHE*     4.0    28.7    -      -       +      -
     51X  GLU*     3.0    32.0    +      -       +      +
     52X  GLN*     3.2    34.7    +      -       -      +
     54X  ASN*     1.3    76.9    -      -       -      +
     56X  GLU*     1.3    61.7    +      -       -      +
     58X  ASN*     3.3     2.3    +      -       -      +
     59X  VAL*     3.1    23.4    +      -       +      +
    143X  THR*     4.3    18.4    -      -       +      +
    146X  LYS*     4.1    29.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 56 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52X  GLN*     2.9    44.1    +      -       -      +
     53X  ILE      3.8     2.9    -      -       -      +
     55X  VAL*     1.3    75.7    -      -       -      +
     57X  TYR*     1.3    58.1    +      -       -      +
     59X  VAL*     3.2     4.7    +      -       -      +
     60X  SER*     2.9    27.9    +      -       -      -
     91X  GLU*     3.1    16.5    -      -       -      +
     94X  HIS*     3.6    11.2    -      -       -      +
     95X  ALA*     3.7    21.3    -      -       -      +
     98X  LEU*     3.9    17.7    -      -       +      -
    143X  THR*     3.7    10.4    -      -       -      +
    147X  LEU*     4.0    10.0    -      -       -      +
    170X  TYR*     4.2     6.8    -      -       -      -
    242X   CA      2.5    28.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 57 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57J  TYR*     5.4    13.5    -      +       -      -
     60J  SER*     5.0     2.8    +      -       -      -
     61J  TYR*     3.5    37.6    -      +       -      +
     64J  HIS*     2.6    42.7    +      +       -      +
     88J  SER*     4.6     1.4    +      -       -      -
     53X  ILE*     2.9    16.3    +      -       +      +
     54X  ASN*     3.9     7.0    -      -       -      +
     56X  GLU*     1.3    77.1    -      -       -      +
     58X  ASN*     1.3    61.4    +      -       -      +
     60X  SER*     3.3    12.7    +      -       -      -
     61X  TYR*     3.1    22.0    +      +       +      +
     92X  ARG*     3.7    23.2    +      -       +      -
     95X  ALA*     3.7    22.4    -      -       +      +
     99X  MET*     4.5     6.1    -      -       -      -
    111X  LEU*     4.5     9.0    -      -       +      -
    114X  ILE*     3.5    27.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 58 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15H  PHE*     3.9    27.3    +      -       +      -
     17H  PRO*     4.0     8.1    -      -       +      +
     54X  ASN*     2.9    52.9    +      -       -      +
     55X  VAL      3.7     3.6    -      -       -      +
     57X  TYR*     1.3    75.6    -      -       -      +
     59X  VAL*     1.3    60.1    +      -       -      +
     61X  TYR*     3.1     3.8    +      -       -      +
     62X  VAL*     2.9    33.4    +      -       -      +
    113X  SER      4.1     5.7    +      -       -      -
    114X  ILE*     3.1    28.8    -      -       -      +
    115X  VAL*     3.4    19.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 59 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15H  PHE*     5.1     7.6    -      -       +      -
     17H  PRO*     5.9     2.2    -      -       +      -
     55X  VAL*     3.1    20.0    +      -       +      +
     56X  GLU*     3.7     3.1    -      -       -      +
     58X  ASN*     1.3    76.3    -      -       -      +
     60X  SER*     1.3    63.7    +      -       -      +
     62X  VAL*     3.3     7.6    +      -       -      +
     63X  TYR*     3.0    48.4    +      -       +      -
     91X  GLU*     3.4    24.2    -      -       -      +
    139X  LEU*     4.9    19.7    -      -       +      +
    140X  GLU*     4.4     4.5    -      -       -      +
    142X  LEU*     6.4     0.9    -      -       +      -
    143X  THR*     3.5    24.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 60 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57J  TYR*     5.0     2.6    +      -       -      -
     92J  ARG*     4.5     4.5    +      -       -      -
     56X  GLU      2.9    10.0    +      -       -      -
     57X  TYR*     3.4    16.7    -      -       -      -
     59X  VAL*     1.3    78.4    -      -       -      +
     61X  TYR*     1.3    60.9    +      -       -      -
     63X  TYR      3.3     0.3    +      -       -      -
     64X  HIS*     3.0    10.7    +      -       -      +
     88X  SER*     2.7    51.5    +      -       -      +
     91X  GLU*     3.6    19.1    -      -       -      +
     92X  ARG*     3.7    18.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 61 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53J  ILE*     5.9     0.2    -      -       -      +
     54J  ASN*     4.1     4.5    +      -       -      -
     57J  TYR*     3.6    49.4    -      +       -      +
    111J  LEU*     3.6    21.2    -      -       +      +
    112J  GLN      2.6    36.5    +      -       -      -
    114J  ILE*     3.7    18.9    -      -       +      +
     57X  TYR*     3.1    14.1    +      +       -      +
     58X  ASN      3.1     7.8    +      -       -      +
     60X  SER*     1.3    73.5    -      -       -      +
     62X  VAL*     1.3    66.4    +      -       +      +
     64X  HIS*     3.1     6.2    +      -       -      +
     65X  ALA*     3.0    21.5    +      -       -      +
    114X  ILE*     3.5    29.2    -      -       +      -
    115X  VAL      3.9     3.8    -      -       -      -
    117X  PRO*     3.6    32.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 62 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17H  PRO*     4.4    17.9    -      -       +      -
     18H  PHE*     3.7    38.1    -      -       +      -
     58X  ASN*     2.9    22.7    +      -       -      +
     59X  VAL*     3.7     5.8    -      -       -      +
     61X  TYR*     1.3    77.2    -      -       +      +
     63X  TYR*     1.3    57.1    +      -       -      +
     65X  ALA*     3.1     5.0    +      -       -      +
     66X  MET*     3.0    36.5    +      -       +      +
    117X  PRO*     4.3    11.7    -      -       +      -
    121X  PHE*     5.1     1.8    -      -       +      -
    139X  LEU*     3.5    29.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with TYR 63 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59X  VAL*     3.0    28.9    +      -       +      +
     60X  SER      3.7     4.3    -      -       -      +
     62X  VAL*     1.3    76.9    -      -       -      +
     64X  HIS*     1.3    57.7    +      -       -      +
     66X  MET*     3.2    13.5    +      -       +      +
     67X  PHE*     2.9    25.8    +      -       -      +
     83X  PHE*     5.8     1.8    -      +       -      -
     84X  PHE*     3.6    40.2    -      +       -      +
     87X  SER*     3.6    23.6    -      -       -      -
     88X  SER      3.8     4.5    -      -       -      +
     91X  GLU*     3.7    22.7    -      -       +      -
    136X  ALA*     3.8    28.5    +      -       +      +
    139X  LEU*     4.3    12.5    -      -       +      +
    140X  GLU*     2.5    41.0    +      -       -      +
    181X  ILE*     4.0     4.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 64 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57J  TYR*     2.7    35.6    +      +       -      +
     92J  ARG*     3.6    19.1    +      -       +      -
     96J  GLU*     2.6    41.6    +      -       +      +
     99J  MET*     3.6    23.9    -      -       +      +
    111J  LEU*     4.1     8.7    -      -       +      -
     60X  SER      3.0     8.0    +      -       -      +
     61X  TYR      3.1     8.9    +      -       -      +
     63X  TYR*     1.3    76.7    -      -       -      +
     65X  ALA*     1.3    62.6    +      -       -      +
     67X  PHE*     3.4    19.9    +      +       +      +
     68X  ALA*     3.0    22.9    +      -       -      +
     85X  LYS*     5.0     2.0    -      -       +      -
     88X  SER*     3.5    19.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 65 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    111J  LEU*     3.7    13.1    -      -       +      +
     61X  TYR      3.0    12.2    +      -       -      +
     62X  VAL      3.3     9.4    -      -       -      +
     64X  HIS*     1.3    77.5    -      -       -      +
     66X  MET*     1.3    60.8    +      -       -      +
     68X  ALA*     3.2     7.2    +      -       -      +
     69X  TYR*     3.1    21.8    +      -       -      +
    117X  PRO*     3.9    17.0    -      -       +      -
    118X  LEU      3.4    24.9    -      -       -      +
    119X  SER*     4.5     4.4    -      -       -      +
    121X  PHE*     3.8     6.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 66 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62X  VAL*     3.0    27.8    +      -       +      +
     63X  TYR*     3.2    16.8    +      -       -      +
     65X  ALA*     1.3    73.7    -      -       -      +
     67X  PHE*     1.3    67.5    +      -       -      +
     69X  TYR*     3.2     1.7    +      -       -      +
     70X  PHE*     3.1    32.3    +      -       +      -
     84X  PHE*     3.5    45.3    -      -       +      -
    121X  PHE*     3.7    28.3    -      -       +      -
    132X  ALA*     3.9     8.1    -      -       -      +
    135X  LEU*     3.5    44.2    -      -       +      -
    136X  ALA*     4.2     5.4    -      -       -      +
    139X  LEU*     4.2     4.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 67 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96J  GLU*     4.4    10.3    -      -       +      -
     99J  MET*     4.1    16.2    -      -       +      -
    100J  GLU*     4.0    15.5    -      -       +      -
    103J  ASN*     5.6     0.4    -      -       -      -
     63X  TYR      2.9    13.5    +      -       -      +
     64X  HIS*     3.5    25.8    -      +       -      +
     66X  MET*     1.3    76.1    -      -       -      +
     68X  ALA*     1.3    70.4    +      -       -      +
     69X  TYR      3.2     0.3    +      -       -      -
     70X  PHE*     3.2     2.8    +      -       -      +
     71X  ASP*     2.9    56.1    +      -       +      +
     81X  ALA*     3.3    27.8    -      -       +      +
     84X  PHE*     3.7     7.5    -      -       -      +
     85X  LYS*     3.6    51.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 68 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     99J  MET*     3.9     9.4    -      -       +      -
    103J  ASN*     2.9    31.2    +      -       -      +
    109J  VAL*     3.8    39.5    -      -       +      +
     64X  HIS      3.0    16.1    +      -       -      +
     65X  ALA*     3.6     8.1    -      -       -      +
     66X  MET      3.2     0.2    -      -       -      -
     67X  PHE*     1.3    82.6    -      -       +      +
     69X  TYR*     1.3    62.2    +      -       -      +
     71X  ASP*     3.8     0.9    +      -       -      -
     72X  ARG*     3.7     4.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 69 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33J  GLN*     5.9     1.2    -      -       -      +
     65X  ALA      3.1     8.9    +      -       -      +
     66X  MET      3.6     4.7    -      -       -      +
     67X  PHE      3.1     0.4    -      -       -      -
     68X  ALA*     1.3    77.9    -      -       -      +
     70X  PHE*     1.3    82.8    +      +       -      +
     72X  ARG*     3.1    62.1    +      -       -      +
     75X  VAL*     3.6    32.3    -      -       +      +
    119X  SER      3.6     9.4    +      -       -      +
    120X  ASP*     4.0     6.3    -      -       -      -
    121X  PHE*     3.5    54.3    -      +       +      -
    122X  ASP*     3.1    33.6    +      -       +      +
    128X  ASP*     4.2     5.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 70 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66X  MET*     3.1    31.3    +      -       +      +
     69X  TYR*     1.3    91.8    -      +       -      +
     71X  ASP*     1.3    57.6    -      -       -      +
     72X  ARG      3.2     1.5    +      -       -      -
     75X  VAL*     3.6    16.8    -      -       +      -
     76X  ALA*     3.8     5.7    +      -       -      -
     77X  LEU*     3.5    49.1    +      -       +      +
     80X  LEU*     3.7    17.9    -      -       +      -
     81X  ALA*     3.9    25.1    -      -       -      +
     84X  PHE*     3.8    18.4    -      +       -      -
    121X  PHE*     4.5     5.8    -      -       +      -
    128X  ASP*     3.7    25.1    -      -       +      -
    132X  ALA*     3.4    35.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 71 (chain X). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100J  GLU*     4.1    13.3    -      -       -      +
    103J  ASN*     3.0    33.4    +      -       -      +
    179Q  LYS*     3.0    35.3    +      -       -      -
    183Q  GLU*     4.5     2.5    -      -       -      +
     67X  PHE*     2.9    45.4    +      -       +      +
     69X  TYR      3.1     0.4    -      -       -      -
     70X  PHE*     1.3    73.9    -      -       -      +
     72X  ARG*     1.3    64.8    +      -       -      +
     76X  ALA*     5.7     0.2    -      -       -      -
     81X  ALA*     4.0     7.2    -      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il