Contacts of the helix formed by residues 77 - 106 (chain C) in PDB entry 3A68


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LEU 77 (chain C).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70C  PHE*     3.5    38.8    +      -       +      +
     75C  VAL*     3.3     1.5    -      -       +      +
     76C  ALA*     1.3    80.8    -      -       -      +
     78C  ARG*     1.3    60.3    +      -       -      +
     79C  GLY      3.3     2.7    -      -       -      -
     80C  LEU*     3.3     5.2    +      -       +      +
     81C  ALA*     3.0    27.4    +      -       -      +
    128C  ASP*     4.0     9.6    -      -       -      +
    129C  ALA*     4.1    13.9    -      -       +      -
    197C  VAL*     4.2     5.8    -      -       +      -
    198C  TRP*     4.5     7.6    -      -       +      -
    201C  ASP*     3.3    31.0    -      -       +      +
    190F  ARG*     3.6    50.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 78 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70C  PHE      5.2     0.4    -      -       -      -
     76C  ALA*     3.7     8.5    +      -       +      -
     77C  LEU*     1.3    72.9    -      -       -      +
     79C  GLY*     1.3    57.2    +      -       -      +
     81C  ALA*     3.7     7.6    -      -       +      +
     82C  LYS*     2.9    30.1    +      -       -      +
    201C  ASP*     3.1     4.6    +      -       -      +
    202C  GLN*     3.1    27.0    +      -       -      +
    205C  LEU*     4.0    29.4    -      -       +      +
    183F  GLU*     4.7    23.1    -      -       -      +
    184F  TYR*     6.1     0.2    -      -       -      -
    187F  GLN*     3.1    31.5    +      -       -      +
    203F  MET*     3.7    17.0    -      -       -      +
    207F  GLU*     3.1    24.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 79 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     78C  ARG*     1.3    78.3    -      -       -      +
     80C  LEU*     1.3    56.2    +      -       -      +
     82C  LYS*     3.4     3.6    +      -       -      +
     83C  PHE*     2.9    28.6    +      -       -      +
    201C  ASP*     2.9    29.2    +      -       -      -
    204C  LEU*     3.7    11.3    -      -       -      +
    205C  LEU*     3.6    21.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 80 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70C  PHE*     3.6    37.9    -      -       +      -
     77C  LEU*     3.8     7.2    -      -       +      +
     79C  GLY*     1.3    69.6    -      -       -      +
     81C  ALA*     1.3    67.0    +      -       -      +
     83C  PHE*     3.2     2.1    +      -       -      +
     84C  PHE*     2.9    45.4    +      -       +      -
    129C  ALA*     3.7    32.8    -      -       +      +
    133C  MET*     4.3     8.3    -      -       +      -
    197C  VAL*     5.9     0.4    -      -       +      +
    200C  PHE*     4.1    19.3    -      -       +      -
    201C  ASP*     2.7    31.0    +      -       +      +
    204C  LEU*     3.7    22.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 81 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67C  PHE*     3.3    30.8    -      -       +      +
     70C  PHE*     3.8    27.2    -      -       -      +
     71C  ASP*     3.9    11.2    -      -       +      +
     77C  LEU      3.0    17.4    +      -       -      +
     78C  ARG*     3.7     8.1    -      -       -      +
     80C  LEU*     1.3    77.1    -      -       -      +
     82C  LYS*     1.3    56.9    +      -       -      +
     84C  PHE*     3.9     0.3    -      -       -      -
     85C  LYS      2.9    25.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 82 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67C  PHE*     5.8     0.2    -      -       -      -
     78C  ARG      2.9    18.3    +      -       -      +
     79C  GLY*     3.7     3.8    -      -       -      +
     81C  ALA*     1.3    76.0    -      -       -      +
     83C  PHE*     1.3    64.4    +      -       -      +
     85C  LYS*     3.3     9.2    +      -       +      +
     86C  GLU*     3.0    66.4    +      -       +      +
    204C  LEU      4.3     8.0    +      -       -      -
    205C  LEU*     3.2    39.4    +      -       +      +
    207C  GLU      5.0     7.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 83 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63C  TYR*     5.7     1.6    -      +       -      -
     79C  GLY      2.9    18.1    +      -       -      +
     80C  LEU      3.2     3.1    +      -       -      +
     82C  LYS*     1.3    77.5    -      -       -      +
     84C  PHE*     1.3    80.7    +      +       -      +
     86C  GLU*     3.5     9.6    +      -       +      +
     87C  SER*     2.8    50.1    +      -       -      -
    133C  MET*     3.7    28.7    -      -       +      -
    136C  ALA*     5.3     0.2    -      -       +      -
    180C  ARG*     3.6    41.3    -      -       -      -
    181C  ILE*     4.1    23.3    -      -       +      -
    184C  TYR*     3.7    17.3    -      +       -      -
    204C  LEU*     3.9    17.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 84 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63C  TYR*     3.6    37.6    -      +       -      +
     66C  MET*     3.7    30.7    -      -       +      -
     67C  PHE*     3.6    10.1    -      -       -      +
     70C  PHE*     3.7    30.5    -      +       -      -
     80C  LEU*     2.9    38.9    +      -       +      +
     83C  PHE*     1.3    94.3    -      +       -      +
     85C  LYS*     1.3    61.4    +      -       -      +
     87C  SER*     3.6     3.3    -      -       -      -
     88C  SER*     2.9    30.8    +      -       -      -
    132C  ALA*     4.1    16.2    -      -       +      -
    133C  MET*     4.2    14.8    -      -       +      -
    136C  ALA*     4.0    13.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 85 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64C  HIS*     5.0     1.1    -      -       -      +
     67C  PHE*     3.7    34.7    -      -       +      +
     81C  ALA      2.9    17.5    +      -       -      +
     82C  LYS*     3.5     9.4    -      -       +      +
     84C  PHE*     1.3    78.8    -      -       -      +
     86C  GLU*     1.3    64.8    +      -       +      +
     88C  SER*     3.3     5.9    +      -       -      -
     89C  GLU*     3.2    21.2    +      -       -      +
     92O  ARG*     4.5     2.3    +      -       -      -
     96O  GLU*     3.2    41.4    +      -       -      +
    100O  GLU*     2.5    26.5    +      -       -      -
    216O   CA      4.6     1.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 86 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     82C  LYS*     3.0    57.9    +      -       +      +
     83C  PHE*     3.9     7.4    -      -       +      +
     85C  LYS*     1.3    77.7    -      -       +      +
     87C  SER*     1.3    58.1    +      -       -      +
     89C  GLU*     3.2    12.1    +      -       -      +
     90C  GLU*     3.0    28.2    +      -       -      +
    180C  ARG*     5.2     7.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 87 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63C  TYR*     3.7    27.4    -      -       -      -
     83C  PHE*     2.8    47.8    +      -       -      -
     84C  PHE*     3.6     6.3    -      -       -      -
     85C  LYS      3.3     0.2    -      -       -      -
     86C  GLU*     1.3    77.1    -      -       -      +
     88C  SER*     1.3    63.1    +      -       -      +
     90C  GLU*     3.2     7.5    +      -       -      +
     91C  GLU*     2.9    28.4    +      -       -      +
    180C  ARG*     5.5     0.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 88 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60C  SER*     2.7    48.7    +      -       -      +
     63C  TYR*     3.7     7.5    -      -       -      +
     64C  HIS*     3.5    23.8    +      -       -      -
     84C  PHE      2.9    18.2    +      -       -      -
     85C  LYS      3.6     3.6    -      -       -      -
     87C  SER*     1.3    77.4    -      -       -      +
     89C  GLU*     1.3    61.7    +      -       -      +
     91C  GLU      3.4     0.9    +      -       -      -
     92C  ARG*     3.1     9.9    +      -       -      +
     57O  TYR*     4.6     0.2    +      -       -      -
     92O  ARG*     2.8    24.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 89 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     85C  LYS      3.2    10.3    +      -       -      +
     86C  GLU*     3.2    12.9    +      -       -      +
     88C  SER*     1.3    78.4    -      -       -      +
     90C  GLU*     1.3    64.2    +      -       -      +
     92C  ARG*     3.3     7.9    +      -       +      +
     93C  GLU*     3.1    32.4    +      -       +      +
     89O  GLU*     4.2    15.9    -      -       -      +
     92O  ARG*     3.5    24.7    +      -       -      +
     93O  GLU*     5.6     4.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 90 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     86C  GLU      3.0    17.6    +      -       -      +
     87C  SER*     3.6     7.9    -      -       -      +
     89C  GLU*     1.3    78.3    -      -       -      +
     91C  GLU*     1.3    58.2    +      -       -      +
     93C  GLU*     3.1    17.7    +      -       -      +
     94C  HIS*     3.0    56.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 91 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56C  GLU*     3.1    15.0    -      -       -      +
     59C  VAL*     3.4    26.4    -      -       +      +
     60C  SER*     3.5    23.8    -      -       -      +
     63C  TYR*     3.6    20.5    -      -       +      -
     87C  SER      2.9    19.7    +      -       -      +
     89C  GLU      3.3     0.2    -      -       -      -
     90C  GLU*     1.3    74.8    -      -       -      +
     92C  ARG*     1.3    66.2    +      -       -      +
     94C  HIS*     3.0    17.4    +      -       -      +
     95C  ALA*     3.0    21.7    +      -       -      +
    140C  GLU*     3.7    13.1    -      -       -      +
    214C   CA      2.6    30.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 92 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57C  TYR*     3.8    29.2    +      -       +      +
     60C  SER*     3.7    17.6    +      -       -      +
     88C  SER      3.1     5.2    +      -       -      +
     89C  GLU*     3.6    11.8    -      -       -      +
     90C  GLU      3.3     0.2    -      -       -      -
     91C  GLU*     1.3    77.7    -      -       -      +
     93C  GLU*     1.3    75.7    +      -       -      +
     95C  ALA*     3.2     8.3    +      -       -      +
     96C  GLU*     2.9    37.5    +      -       -      +
     60O  SER*     4.7     2.4    +      -       -      -
     64O  HIS*     3.7    17.8    +      -       +      -
     85O  LYS      4.5     1.6    +      -       -      -
     88O  SER*     2.9    30.9    +      -       -      -
     89O  GLU*     3.5    35.6    +      -       -      +
     92O  ARG*     3.4    33.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 93 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     89C  GLU*     3.1    24.8    +      -       +      +
     90C  GLU*     3.1    22.3    +      -       -      +
     92C  ARG*     1.3    91.5    +      -       -      +
     94C  HIS*     1.3    62.8    +      -       +      +
     96C  GLU*     3.2    10.0    +      -       -      +
     97C  LYS*     2.9    31.1    +      -       -      +
    216C   CA      2.8    28.4    -      -       -      -
     89O  GLU*     4.6     6.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 94 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56C  GLU*     3.6    14.6    -      -       -      +
     90C  GLU*     3.0    48.9    +      -       +      +
     91C  GLU*     3.0    16.5    +      -       -      +
     93C  GLU*     1.3    78.6    -      -       +      +
     95C  ALA*     1.3    62.8    +      -       -      +
     97C  LYS*     4.7     8.3    -      -       -      -
     98C  LEU*     3.4     9.0    +      -       -      +
    169C  GLU      6.1     0.4    -      -       -      -
    170C  TYR*     2.7    46.4    +      +       +      -
    173C  GLU*     5.7     9.1    -      -       +      +
    174C  GLN*     5.4     4.3    -      -       -      -
    214C   CA      2.7    25.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 95 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53C  ILE*     3.9    10.6    -      -       +      +
     56C  GLU*     3.8    22.6    -      -       +      +
     57C  TYR*     3.8    33.2    -      -       +      +
     91C  GLU      3.0     8.9    +      -       -      +
     92C  ARG*     3.5    10.1    -      -       -      +
     93C  GLU      3.2     0.2    -      -       -      -
     94C  HIS*     1.3    77.2    -      -       -      +
     96C  GLU*     1.3    56.6    +      -       -      +
     98C  LEU*     3.2     8.6    +      -       -      +
     99C  MET*     3.0    30.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 96 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     92C  ARG*     2.9    23.8    +      -       +      +
     93C  GLU*     3.2    12.6    +      -       -      +
     95C  ALA*     1.3    78.3    -      -       -      +
     97C  LYS*     1.3    56.1    +      -       -      +
     99C  MET*     3.1    11.5    +      -       -      +
    100C  GLU*     2.8    39.8    +      -       -      +
    216C   CA      2.7    27.0    -      -       -      -
     64O  HIS*     2.8    32.9    +      -       +      +
     67O  PHE*     4.4     7.2    -      -       +      -
     85O  LYS*     3.0    35.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 97 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     93C  GLU      2.9    15.8    +      -       -      +
     94C  HIS*     3.8     8.5    -      -       -      +
     96C  GLU*     1.3    76.9    -      -       -      +
     98C  LEU*     1.3    57.4    +      -       -      +
    100C  GLU*     3.4    14.7    +      -       +      +
    101C  TYR*     2.9    26.7    +      -       -      +
    165C  PHE*     4.3     8.3    -      -       +      -
    169C  GLU*     2.7    54.2    +      -       +      +
    170C  TYR*     3.3    21.6    -      -       +      +
    173C  GLU*     5.8     0.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 98 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49C  VAL*     3.9    22.0    -      -       +      +
     52C  GLN*     3.6    33.0    -      -       +      +
     53C  ILE*     3.5    14.1    -      -       +      +
     56C  GLU*     3.8    15.5    -      -       +      -
     94C  HIS      3.4     8.2    +      -       -      +
     95C  ALA      3.2     7.1    +      -       -      +
     96C  GLU      3.2     0.4    -      -       -      -
     97C  LYS*     1.3    76.8    -      -       -      +
     99C  MET*     1.3    60.2    +      -       -      +
    101C  TYR*     3.6     4.6    -      -       +      +
    102C  GLN*     2.9    29.8    +      -       -      +
    147C  LEU*     5.4     0.4    -      -       +      -
    150C  LEU*     4.4    20.0    -      -       +      -
    165C  PHE*     3.8    22.0    -      -       +      -
    170C  TYR*     3.2    28.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET 99 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53C  ILE*     3.7    26.4    -      -       +      +
     57C  TYR*     4.5     3.6    -      -       -      -
     95C  ALA      3.0    22.1    +      -       -      +
     96C  GLU*     3.4    16.6    -      -       -      +
     98C  LEU*     1.3    78.1    -      -       -      +
    100C  GLU*     1.3    61.4    +      -       -      +
    102C  GLN*     3.4     4.7    +      -       -      +
    103C  ASN*     3.2    22.3    +      -       -      -
    109C  VAL*     3.5    18.5    -      -       +      +
    111C  LEU*     4.2    19.3    -      -       +      -
     64O  HIS*     3.7    54.1    -      -       +      +
     67O  PHE*     4.1    11.7    -      -       +      -
     68O  ALA*     3.9    14.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 100 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96C  GLU*     2.8    26.0    +      -       -      +
     97C  LYS*     3.6    12.7    -      -       +      +
     99C  MET*     1.3    77.5    -      -       -      +
    101C  TYR*     1.3    56.2    +      -       -      +
    103C  ASN*     3.2     4.2    +      -       -      +
    104C  LYS*     2.9    43.1    +      -       -      +
     67O  PHE*     3.9    18.4    -      -       +      -
     71O  ASP*     4.2    12.0    -      -       -      +
     85O  LYS*     2.6    38.1    +      -       -      -
    179R  LYS*     5.2     0.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 101 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41C  TYR*     4.4     9.4    -      +       -      -
     49C  VAL*     4.7     6.3    -      -       +      -
     97C  LYS      2.9    17.3    +      -       -      +
     98C  LEU      3.3     5.6    +      -       -      +
    100C  GLU*     1.3    73.8    -      -       -      +
    102C  GLN*     1.3    70.1    +      -       -      +
    104C  LYS*     3.0    27.8    +      -       +      +
    105C  ARG*     3.0    48.1    +      -       +      +
    161C  GLN*     2.5    32.3    +      -       -      -
    162C  LEU*     3.2    32.6    -      -       +      -
    165C  PHE*     3.5    52.7    -      +       +      -
    175R  VAL*     5.2     4.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 102 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41C  TYR*     2.6    44.8    +      -       -      -
     46C  GLU*     3.0    32.6    +      -       -      +
     49C  VAL*     3.8    11.6    -      -       +      +
     50C  ASN*     3.0    26.1    +      -       -      +
     53C  ILE*     4.8     0.7    -      -       +      -
     98C  LEU      2.9    13.5    +      -       -      +
     99C  MET*     3.4    10.8    -      -       -      +
    101C  TYR*     1.3    77.1    -      -       -      +
    103C  ASN*     1.3    57.5    +      -       -      +
    105C  ARG*     3.2     2.1    +      -       -      +
    106C  GLY      3.1     7.4    +      -       -      -
    107C  GLY*     2.9    40.4    +      -       -      -
    108C  LYS      3.7     0.8    +      -       -      -
    109C  VAL*     3.7    22.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 103 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     99C  MET      3.2    10.1    +      -       -      -
    100C  GLU      3.2     4.4    +      -       -      +
    101C  TYR      3.2     0.8    -      -       -      -
    102C  GLN*     1.3    76.6    -      -       -      +
    104C  LYS*     1.3    66.1    +      -       -      +
    106C  GLY*     3.1    11.8    +      -       -      -
    107C  GLY      3.5    15.8    -      -       -      +
    109C  VAL*     4.2     9.4    +      -       -      +
     67O  PHE*     5.5     0.8    -      -       -      -
     68O  ALA*     3.0    29.3    +      -       -      +
     71O  ASP*     2.9    47.9    +      -       -      +
     72O  ARG*     3.5    16.8    -      -       -      +
     73O  ASP*     4.3     7.3    +      -       -      +
    179R  LYS*     3.8    14.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 104 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37C  ALA*     4.1     8.5    -      -       -      +
    100C  GLU*     2.9    31.2    +      -       -      +
    101C  TYR*     3.0    23.2    +      -       +      +
    103C  ASN*     1.3    75.8    -      -       -      +
    105C  ARG*     1.3    61.2    +      -       -      +
    106C  GLY      3.6     0.2    +      -       -      -
    165C  PHE*     6.1     3.0    -      -       -      -
    175R  VAL*     4.0    25.9    -      -       +      +
    176R  GLU*     3.2    40.3    +      -       +      +
    178R  ILE*     5.7     0.3    -      -       -      +
    179R  LYS*     4.0    35.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 105 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37C  ALA*     4.6     1.7    -      -       -      +
     38C  ARG*     3.3    26.0    -      -       -      +
     39C  GLN      3.3    17.1    +      -       -      +
     40C  LYS*     3.1    19.4    +      -       -      +
     41C  TYR*     3.4    40.9    -      -       +      +
    101C  TYR*     3.0    58.7    +      -       +      +
    102C  GLN      3.9     1.1    -      -       -      +
    104C  LYS*     1.3    76.6    -      -       -      +
    106C  GLY*     1.3    61.2    +      -       -      +
    107C  GLY      3.3     0.4    +      -       -      -
    159C  ASP*     3.0    40.8    +      -       -      -
    161C  GLN*     3.8     8.6    +      -       -      +
    162C  LEU*     3.7     4.2    -      -       -      +
    175R  VAL*     3.8    29.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 106 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35C  SER*     3.2    39.6    -      -       -      -
     37C  ALA*     4.7     0.2    -      -       -      -
     38C  ARG*     3.5    18.7    +      -       -      -
    102C  GLN      3.1     2.8    +      -       -      -
    103C  ASN      3.1    12.8    +      -       -      -
    104C  LYS      3.3     0.8    +      -       -      -
    105C  ARG*     1.3    79.6    -      -       -      +
    107C  GLY*     1.3    62.9    +      -       -      +
    108C  LYS*     5.2     2.1    -      -       -      +
     73O  ASP*     3.9     4.9    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il