Contacts of the helix formed by residues 42 - 71 (chain X) in PDB entry 3A9Q
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 42 (chain X).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38X ARG* 3.5 2.7 + - - +
40X LYS* 4.3 5.4 + - - +
41X TYR* 1.3 80.9 - - - +
43X ASP* 1.3 65.7 + - - +
44X GLU* 3.9 4.9 - - + +
45X SER* 3.0 35.0 + - - +
46X GLU* 3.1 9.5 + - - +
157X ASN* 3.7 34.3 - - + +
159X ASP* 4.9 0.8 + - + -
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Residues in contact with ASP 43 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38X ARG* 2.9 26.2 + - - +
42X VAL* 1.3 73.1 - - - +
44X GLU* 1.3 57.2 + - - +
46X GLU* 3.3 13.6 + - - +
47X SER* 2.8 35.8 + - - +
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Residues in contact with GLU 44 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42X VAL* 3.2 5.8 - - + +
43X ASP* 1.3 78.4 - - - +
45X SER* 1.3 57.2 + - - +
47X SER* 3.5 6.4 + - - -
48X ALA* 3.0 27.9 + - + +
153X VAL* 3.9 18.5 - - + +
156X LYS* 3.1 29.8 + - - +
157X ASN* 2.8 30.5 + - - +
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Residues in contact with SER 45 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41X TYR* 4.0 15.9 - - - -
42X VAL* 3.0 24.1 + - - +
44X GLU* 1.3 75.7 - - - +
46X GLU* 1.3 66.3 + - - +
48X ALA* 3.1 3.0 + - - +
49X VAL* 2.9 27.9 + - - +
153X VAL* 4.1 11.0 + - - +
157X ASN* 4.1 13.3 + - - +
159X ASP* 4.2 8.0 + - - +
162X LEU* 3.7 24.6 - - - +
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Residues in contact with GLU 46 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38X ARG* 3.7 23.2 + - - +
41X TYR* 3.7 22.9 - - + -
42X VAL 3.1 7.9 + - - +
43X ASP* 3.6 18.4 - - - +
45X SER* 1.3 78.3 - - - +
47X SER* 1.3 65.0 + - - +
49X VAL 3.3 0.2 + - - -
50X ASN* 3.1 15.3 + - - +
102X GLN* 3.0 36.5 + - - +
107X GLY* 3.4 6.8 - - - -
108X LYS* 2.7 36.3 + - - +
110X LYS* 5.5 2.2 + - - -
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Residues in contact with SER 47 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43X ASP* 2.8 21.7 + - - +
44X GLU* 3.7 8.2 - - - -
46X GLU* 1.3 78.8 + - - +
48X ALA* 1.3 55.8 + - - +
50X ASN* 3.2 10.7 + - - +
51X GLU* 2.8 27.8 + - - +
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Residues in contact with ALA 48 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44X GLU 3.0 17.9 + - - +
45X SER 3.1 4.2 + - - +
47X SER* 1.3 74.0 - - - +
49X VAL* 1.3 60.4 + - - +
51X GLU* 3.2 8.6 + - - +
52X GLN* 2.9 28.6 + - - +
150X LEU* 3.7 22.8 - - + +
153X VAL* 3.9 25.8 - - + -
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Residues in contact with VAL 49 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41X TYR* 3.3 20.2 - - - +
45X SER 2.9 16.5 + - - +
46X GLU 3.6 4.5 - - - +
48X ALA* 1.3 76.8 - - - +
50X ASN* 1.3 57.4 + - - +
52X GLN* 3.2 5.9 + - - +
53X ILE* 2.9 30.6 + - + +
98X LEU* 3.9 30.2 - - + +
101X TYR* 4.7 5.4 - - + -
102X GLN* 3.6 22.9 - - + +
150X LEU* 4.2 12.3 - - + -
162X LEU* 4.0 25.8 - - + -
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Residues in contact with ASN 50 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46X GLU* 3.1 17.2 + - - +
47X SER* 3.2 10.9 + - - +
49X VAL* 1.3 74.1 - - - +
51X GLU* 1.3 62.4 + - - +
53X ILE* 3.3 15.9 + - - +
54X ASN* 3.2 20.4 + - - +
102X GLN* 3.1 18.1 + - - +
108X LYS 3.0 21.6 + - - -
109X VAL* 3.4 4.7 - - - -
110X LYS* 3.0 47.9 + - + +
112X GLN* 3.9 11.0 - - - +
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Residues in contact with GLU 51 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15H PHE* 3.8 27.0 + - - +
47X SER 2.8 13.9 + - - +
48X ALA* 3.4 12.6 - - - +
50X ASN* 1.3 76.6 - - - +
52X GLN* 1.3 57.5 + - - +
54X ASN* 3.1 8.1 + - - +
55X VAL* 3.0 31.7 + - + +
112X GLN* 3.9 21.7 + - - +
146X LYS* 5.4 7.1 + - + +
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Residues in contact with GLN 52 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48X ALA 2.9 13.9 + - - +
49X VAL 3.7 6.1 - - - +
51X GLU* 1.3 73.6 - - - +
53X ILE* 1.3 67.2 + - - +
55X VAL* 3.1 19.7 + - - +
56X GLU* 2.7 49.7 + - - +
98X LEU* 3.5 21.3 - - + -
143X THR* 4.0 5.1 + - - +
146X LYS* 3.4 28.1 - - - +
147X LEU* 3.4 29.9 - - + +
150X LEU* 3.9 18.1 - - + +
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Residues in contact with ILE 53 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61J TYR* 5.9 0.2 - - - +
49X VAL* 2.9 22.2 + - + +
50X ASN* 3.5 29.4 - - - +
51X GLU 3.3 0.2 - - - -
52X GLN* 1.3 75.8 - - - +
54X ASN* 1.3 60.2 + - - +
56X GLU* 3.3 2.4 + - - +
57X TYR* 2.9 29.7 + - + +
95X ALA* 3.9 10.2 - - + +
98X LEU* 3.6 28.7 - - + +
99X MET* 3.7 37.9 - - + +
102X GLN* 4.8 0.4 - - + -
109X VAL* 4.4 9.0 - - + -
110X LYS 5.9 1.3 - - - +
111X LEU* 3.7 29.4 - - + -
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Residues in contact with ASN 54 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15H PHE* 3.8 18.7 + - - +
61J TYR* 4.1 6.4 + - - -
50X ASN 3.2 6.1 + - - +
51X GLU* 3.1 11.4 + - - +
53X ILE* 1.3 79.1 - - - +
55X VAL* 1.3 59.9 + - - +
57X TYR* 4.4 3.6 - - - +
58X ASN* 2.9 53.8 + - - +
112X GLN* 3.4 47.7 + - + +
113X SER 3.1 25.7 + - - +
114X ILE* 4.2 2.8 - - - +
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Residues in contact with VAL 55 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15H PHE* 4.0 26.6 - - + -
51X GLU* 3.0 32.7 + - + +
52X GLN* 3.1 34.5 + - - +
54X ASN* 1.3 76.9 - - - +
56X GLU* 1.3 61.4 + - - +
58X ASN* 3.3 2.3 + - - +
59X VAL* 3.0 23.4 + - + +
143X THR* 4.3 18.4 - - + +
146X LYS* 4.2 31.0 - - + -
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Residues in contact with GLU 56 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52X GLN* 2.7 40.1 + - - +
53X ILE 3.8 2.9 - - - +
55X VAL* 1.3 76.6 - - - +
57X TYR* 1.3 58.2 + - - +
59X VAL* 3.1 4.8 + - - +
60X SER* 2.9 27.9 + - - -
91X GLU* 3.1 15.0 - - - +
94X HIS* 3.6 10.4 - - + +
95X ALA* 3.7 21.5 - - - +
98X LEU* 3.9 17.0 - - + -
143X THR* 3.6 12.3 - - - +
147X LEU* 3.9 9.9 - - - +
170X TYR* 4.3 6.2 - - - -
216X CA 2.4 28.4 - - - -
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Residues in contact with TYR 57 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57J TYR* 5.5 11.9 - + - -
60J SER* 5.1 1.9 + - - -
61J TYR* 3.6 38.9 - + - +
64J HIS* 2.6 42.5 + + - +
88J SER* 4.6 1.4 + - - -
114J ILE* 6.4 0.4 - - + -
53X ILE* 2.9 23.1 + - + +
54X ASN* 3.9 6.7 - - - +
56X GLU* 1.3 78.1 - - - +
58X ASN* 1.3 61.0 + - - +
60X SER* 3.3 12.1 + - - -
61X TYR* 3.0 22.6 + + + +
92X ARG* 3.7 23.9 + - + -
95X ALA* 3.7 22.1 - - + +
99X MET* 4.4 6.3 - - - -
111X LEU* 4.5 2.5 - - + -
114X ILE* 3.6 21.7 - - + +
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Residues in contact with ASN 58 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15H PHE* 3.8 28.8 + - + -
17H PRO* 3.7 8.9 - - + +
54X ASN* 2.9 51.8 + - - +
55X VAL 3.6 4.5 - - - +
57X TYR* 1.3 77.2 - - - +
59X VAL* 1.3 56.6 + - - +
61X TYR* 3.2 3.5 + - - +
62X VAL* 2.9 33.2 + - - +
113X SER 4.2 6.9 + - - -
114X ILE* 3.6 24.1 - - - +
115X VAL* 3.6 23.7 + - - +
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Residues in contact with VAL 59 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15H PHE* 5.1 7.0 - - + -
17H PRO* 5.9 1.1 - - + -
55X VAL* 3.0 20.0 + - + +
56X GLU* 3.1 2.7 + - - +
58X ASN* 1.3 73.4 - - - +
60X SER* 1.3 67.1 + - - +
62X VAL* 3.2 6.7 + - - +
63X TYR* 2.9 52.8 + - + +
91X GLU* 3.6 20.6 - - - +
139X LEU* 4.6 22.0 - - + +
140X GLU* 4.2 5.6 - - - +
142X LEU* 6.6 0.2 - - + -
143X THR* 3.5 23.6 - - + +
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Residues in contact with SER 60 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57J TYR* 5.0 2.8 + - - -
92J ARG* 4.5 4.3 + - - -
56X GLU 2.9 9.6 + - - -
57X TYR* 3.4 15.8 - - - -
59X VAL* 1.3 78.2 - - - +
61X TYR* 1.3 56.0 + - - -
63X TYR 3.3 0.3 + - - -
64X HIS* 3.0 15.2 + - - +
88X SER* 2.6 50.1 + - - +
91X GLU* 3.5 19.4 - - - +
92X ARG* 3.6 18.7 + - - +
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Residues in contact with TYR 61 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53J ILE* 5.9 0.2 - - - +
54J ASN* 4.1 5.4 + - - -
57J TYR* 3.5 49.2 - + - +
111J LEU* 3.6 25.2 - - + +
112J GLN 2.7 31.5 + - - -
114J ILE* 3.7 17.9 - - + +
57X TYR* 3.0 13.6 + + + +
58X ASN 3.2 8.0 + - - +
60X SER* 1.3 73.6 - - - +
62X VAL* 1.3 64.8 + - + +
64X HIS* 3.1 5.6 + - - +
65X ALA* 3.0 21.7 + - - +
114X ILE* 3.5 28.9 - - + -
115X VAL 3.8 5.8 - - - -
117X PRO* 3.7 30.7 - - + +
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Residues in contact with VAL 62 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17H PRO* 4.0 22.7 - - + -
18H PHE* 3.8 36.6 - - + -
58X ASN* 2.9 19.1 + - - +
59X VAL* 3.7 7.2 - - - +
61X TYR* 1.3 75.4 - - + +
63X TYR* 1.3 64.4 + - + +
65X ALA* 3.0 6.1 + - - +
66X MET* 3.0 33.6 + - + +
117X PRO* 4.3 10.8 - - + -
121X PHE* 5.2 0.4 - - + -
139X LEU* 3.5 30.1 - - + -
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Residues in contact with TYR 63 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59X VAL* 2.9 27.0 + - + +
60X SER 3.7 4.0 - - - +
62X VAL* 1.3 78.4 - - + +
64X HIS* 1.3 57.2 + - - +
66X MET* 3.2 11.1 + - + -
67X PHE* 2.9 24.4 + - - +
83X PHE* 5.9 1.3 - + - -
84X PHE* 3.5 42.4 - + - +
87X SER* 3.5 25.4 - - - -
88X SER 3.8 4.5 - - - +
91X GLU* 3.7 22.7 - - + -
136X ALA* 3.6 31.7 + - + +
139X LEU* 4.4 10.1 - - + +
140X GLU* 2.6 40.3 + - - +
181X ILE* 4.1 3.9 - - + +
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Residues in contact with HIS 64 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57J TYR* 2.7 35.5 + + - +
92J ARG* 3.5 20.9 + - + -
96J GLU* 2.7 41.9 + - + +
99J MET* 3.7 30.6 - - + +
111J LEU* 4.1 9.2 - - + -
60X SER 3.0 8.0 + - - +
61X TYR 3.1 9.1 + - - +
63X TYR* 1.3 75.8 - - - +
65X ALA* 1.3 59.1 + - - +
67X PHE* 3.3 16.6 + + - +
68X ALA* 3.0 27.4 + - - +
85X LYS* 5.0 2.2 - - + -
88X SER* 3.5 19.4 - - - +
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Residues in contact with ALA 65 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111J LEU* 3.6 20.3 - - + +
61X TYR 3.0 10.6 + - - +
62X VAL 3.0 10.2 + - - +
64X HIS* 1.3 78.1 - - - +
66X MET* 1.3 59.8 + - - +
68X ALA* 3.3 6.7 + - - +
69X TYR* 3.1 18.2 + - - +
117X PRO* 3.9 11.4 - - + -
118X LEU 3.5 24.7 - - - +
119X SER* 4.4 4.3 - - - +
121X PHE* 3.7 11.1 - - + -
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Residues in contact with MET 66 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62X VAL* 3.0 25.9 + - + +
63X TYR* 3.2 15.9 + - - +
65X ALA* 1.3 75.3 - - - +
67X PHE* 1.3 67.3 + - - +
69X TYR* 3.2 2.1 + - - +
70X PHE* 3.0 32.6 + - + -
84X PHE* 3.4 46.7 - - + -
121X PHE* 3.7 28.9 - - + -
132X ALA* 3.9 8.3 - - - +
135X LEU* 3.5 45.1 - - + -
136X ALA* 4.3 5.2 - - - +
139X LEU* 4.4 3.8 - - + -
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Residues in contact with PHE 67 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96J GLU* 4.5 9.0 - - + -
99J MET* 4.0 17.0 - - + -
100J GLU* 4.0 20.4 - - + -
103J ASN* 5.4 0.7 - - - -
63X TYR 2.9 13.2 + - - +
64X HIS* 3.5 24.2 - + - +
66X MET* 1.3 76.1 - - - +
68X ALA* 1.3 64.2 + - - +
70X PHE* 3.2 1.2 + - - -
71X ASP* 2.9 57.2 + - + +
81X ALA* 3.4 28.3 - - + +
84X PHE* 3.6 7.0 - - - +
85X LYS* 3.6 54.7 - - + +
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Residues in contact with ALA 68 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99J MET* 4.0 9.6 - - + -
103J ASN* 2.9 31.2 + - - +
109J VAL* 3.8 38.8 - - + +
64X HIS 3.0 17.0 + - - +
65X ALA* 3.6 9.0 - - - +
66X MET 3.2 0.2 - - - -
67X PHE* 1.3 82.3 - - + +
69X TYR* 1.3 60.9 + - - +
71X ASP 3.8 0.7 + - - -
72X ARG* 3.6 5.2 + - - +
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Residues in contact with TYR 69 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33J GLN* 5.9 1.4 - - - +
65X ALA 3.1 6.2 + - - +
66X MET 3.6 7.0 - - - +
67X PHE 3.2 0.2 - - - -
68X ALA* 1.3 77.0 - - - +
70X PHE* 1.3 89.2 + + - +
71X ASP 3.1 0.4 - - - -
72X ARG* 3.2 59.5 + - - +
75X VAL* 3.6 33.6 - - + +
119X SER 3.7 10.7 + - - +
120X ASP* 3.9 7.2 - - - -
121X PHE* 3.5 40.8 - + + -
122X ASP* 3.0 34.4 - - - +
128X ASP* 4.1 10.7 + - + -
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Residues in contact with PHE 70 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66X MET* 3.0 32.4 + - + +
69X TYR* 1.3 93.5 - + - +
71X ASP* 1.3 57.9 + - - +
72X ARG 3.2 2.0 + - - -
75X VAL* 3.6 15.9 - - + -
76X ALA* 3.7 5.4 + - - -
77X LEU* 3.5 50.2 + - + +
80X LEU* 3.7 19.1 - - + -
81X ALA* 3.9 24.5 - - - +
84X PHE* 3.8 19.3 - + - -
121X PHE* 4.6 5.4 - - + -
128X ASP* 3.7 23.1 - - + -
132X ALA* 3.4 34.3 - - + -
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Residues in contact with ASP 71 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100J GLU* 4.2 12.7 - - - +
103J ASN* 2.9 35.8 + - - +
179Q LYS* 3.0 35.9 + - - -
183Q GLU* 4.5 2.0 - - - +
67X PHE* 2.9 45.7 + - + +
69X TYR 3.1 0.2 - - - -
70X PHE* 1.3 75.4 - - - +
72X ARG* 1.3 62.0 + - - +
76X ALA* 5.7 0.2 - - - -
81X ALA* 3.9 6.7 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il