Contacts of the helix formed by residues 184 - 205 (chain A) in PDB entry 3ADB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 184 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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182A LYS 3.7 2.2 + - - -
183A ASN* 1.3 76.9 - - - +
185A ASN* 1.3 53.9 + - - +
186A ILE* 2.6 49.2 + - - +
187A SER* 2.5 42.5 + - - -
188A ASP 3.1 4.2 + - - -
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Residues in contact with ASN 185 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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183A ASN 3.4 3.5 + - - +
184A ASN* 1.3 69.7 - - - +
186A ILE* 1.3 63.3 + - + +
188A ASP* 3.7 9.1 + - - +
189A LYS* 3.3 19.6 + - - +
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Residues in contact with ILE 186 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184A ASN* 2.6 20.5 + - - +
185A ASN* 1.3 72.1 - - + +
187A SER* 1.3 65.0 + - - +
188A ASP 3.1 1.3 - - - -
189A LYS* 2.9 19.9 + - + +
190A ILE* 3.1 26.7 + - + +
232A VAL* 4.0 26.2 - - + +
233A ASP* 6.0 0.9 - - - -
234A ALA* 4.3 15.7 - - + +
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Residues in contact with SER 187 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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183A ASN* 3.9 20.2 - - - -
184A ASN* 2.5 40.2 + - - -
186A ILE* 1.3 73.4 - - - +
188A ASP* 1.3 62.0 + - - +
190A ILE* 3.4 14.0 + - - +
191A ASP* 3.2 26.2 + - - +
227A LYS* 4.6 19.7 - - - +
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Residues in contact with ASP 188 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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183A ASN* 3.5 31.1 + - - +
184A ASN 3.1 7.5 + - - +
185A ASN* 3.9 11.9 - - - +
187A SER* 1.3 76.1 - - - +
189A LYS* 1.3 59.7 + - - +
191A ASP* 3.3 9.8 - - - +
192A LYS* 3.1 60.4 + - - +
14C G 5.3 4.2 + - - -
15C G 5.4 4.6 - - - +
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Residues in contact with LYS 189 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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185A ASN 3.3 11.4 + - - +
186A ILE* 2.9 14.2 + - + +
188A ASP* 1.3 76.7 - - - +
190A ILE* 1.3 60.0 + - - +