Contacts of the helix formed by residues 185 - 205 (chain B) in PDB entry 3ADB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 185 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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183B ASN 3.4 5.3 + - - +
184B ASN* 1.3 72.5 - - - +
186B ILE* 1.3 89.4 + - - +
187B SER* 3.5 5.1 + - - +
188B ASP* 2.7 19.5 + - - +
189B LYS* 3.1 31.8 + - - +
22D C 5.2 2.2 - - - +
23D C 5.8 6.0 - - - -
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Residues in contact with ILE 186 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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185B ASN* 1.3 88.6 + - - +
187B SER* 1.3 68.6 + - - +
189B LYS* 2.9 29.2 + - + +
190B ILE* 3.1 26.0 + - + +
231B GLU* 5.6 4.7 - - - +
232B VAL* 4.5 28.7 - - + +
234B ALA* 5.8 5.4 - - + +
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Residues in contact with SER 187 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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185B ASN* 3.5 4.1 + - - +
186B ILE* 1.3 80.2 - - - +
188B ASP* 1.3 62.4 + - - +
190B ILE* 3.4 11.1 + - - +
191B ASP* 3.2 21.3 + - - +
223B LEU* 5.4 1.2 - - - +
227B LYS* 4.7 20.1 - - - +
21D C 4.6 1.4 + - - -
22D C 4.0 32.0 + - - +
23D C 4.9 4.1 + - - -
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Residues in contact with ASP 188 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184B ASN* 3.8 21.5 - - + +
185B ASN* 2.7 45.4 + - - +
186B ILE 3.1 0.2 - - - -
187B SER* 1.3 75.4 - - - +
189B LYS* 1.3 63.2 + - - +
191B ASP* 3.5 6.6 + - - +
192B LYS* 3.1 32.0 + - - +
14D G 5.1 1.9 + - - -
21D C 4.7 0.6 + - - -
22D C 2.7 50.8 + - - +
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Residues in contact with LYS 189 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184B ASN* 4.2 19.3 - - + +
185B ASN 3.1 18.6 - - - +
186B ILE* 2.9 19.2 + - + +
188B ASP* 1.3 76.9 - - - +
190B ILE* 1.3 60.6 + - + +
192B LYS* 3.4 6.8 + - - +
193B GLU* 2.8 40.3 + - + +
234B ALA* 5.3 14.6 - - + -
238B LEU* 5.6 0.2 - - - -
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Residues in contact with ILE 190 (chain B).
Click here for Legend to table.