Contacts of the helix formed by residues 130 - 197 (chain A) in PDB entry 3D5K
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 130 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A SCY 3.3 6.7 + - - -
2A SER* 4.7 3.1 - - - -
3A LEU 5.2 0.2 + - - -
127A ASP* 3.2 19.5 + - - -
128A LEU 3.4 3.2 - - - -
129A PHE* 1.3 78.0 - - - +
131A ARG* 1.3 59.0 + - - +
132A LEU 3.5 0.7 - - - -
133A ARG* 3.4 21.6 + - - +
134A SER* 2.7 33.8 + - - -
290A GLY 4.4 0.5 - - - +
294A ALA* 4.5 1.1 - - - -
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Residues in contact with ARG 131 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A GLU* 3.0 39.9 + - - +
127A ASP* 2.7 10.1 + - - +
129A PHE 3.5 2.0 - - - -
130A GLY* 1.3 75.5 - - - +
132A LEU* 1.3 76.5 + - - +
134A SER* 3.3 5.7 + - - -
135A LEU* 3.1 45.3 + - - +
291A ALA* 3.6 32.6 + - + +
294A ALA* 3.8 25.6 - - + +
295A ALA* 5.1 5.2 - - - +
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Residues in contact with LEU 132 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80A GLN 4.5 4.5 - - - +
83A ASP* 3.6 37.5 - - + +
84A LEU* 3.7 20.2 - - + -
125A GLU* 3.8 45.1 - - + +
127A ASP* 2.9 14.1 + - + +
131A ARG* 1.3 99.2 - - - +
133A ARG* 1.3 61.1 + - - +
135A LEU* 3.4 15.8 + - + +
136A ARG* 3.0 27.2 + - - +
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Residues in contact with ARG 133 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A SCY 3.0 59.9 + - - +
2A SER* 4.1 15.4 - - - +
4A ILE* 5.3 0.7 - - + -
84A LEU* 3.6 17.3 - - + -
127A ASP* 3.1 22.9 + - - +
130A GLY* 3.4 14.5 - - - +
131A ARG 3.3 0.2 - - - -
132A LEU* 1.3 73.9 - - - +
134A SER* 1.3 60.6 + - - +
136A ARG* 3.3 34.4 + - - +
137A ASP* 2.9 39.2 + - - +
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Residues in contact with SER 134 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2A SER* 4.8 1.0 + - - -
3A LEU 4.9 1.0 + - - -
4A ILE* 3.4 26.0 + - - +
130A GLY 2.7 23.4 + - - -
131A ARG 3.4 6.1 - - - -
133A ARG* 1.3 73.6 - - - +
135A LEU* 1.3 59.6 + - - +
137A ASP 3.4 0.2 + - - -
138A GLN* 2.9 28.3 + - - +
287A ALA* 3.4 26.3 - - - +
290A GLY* 3.4 12.5 - - - -
291A ALA* 3.4 13.2 - - - -
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Residues in contact with LEU 135 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80A GLN* 2.8 33.4 + - + +
131A ARG* 3.1 42.3 + - - +
132A LEU* 3.7 19.7 - - + +
133A ARG 3.3 0.2 - - - -
134A SER* 1.3 76.3 - - - +
136A ARG* 1.3 55.7 + - - +
138A GLN* 3.3 23.1 + - - +
139A ALA 3.0 18.9 + - - -
288A SER* 5.7 0.4 - - - -
291A ALA* 3.9 18.6 - - + -
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Residues in contact with ARG 136 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77A TYR* 3.7 24.3 - - + -
80A GLN* 3.9 20.8 - - - +
81A ARG* 3.9 26.2 - - - +
84A LEU* 3.6 25.1 - - + +
132A LEU 3.0 17.0 + - - +
133A ARG* 3.5 35.6 + - - +
134A SER 3.3 0.2 - - - -
135A LEU* 1.3 77.2 - - - +
137A ASP* 1.3 82.2 + - - +
139A ALA* 3.3 1.8 + - - +
140A LEU* 2.9 27.2 + - - +
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Residues in contact with ASP 137 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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4A ILE* 3.9 15.7 - - + +
133A ARG* 2.9 20.3 + - - +
134A SER* 3.8 5.2 - - - +
136A ARG* 1.3 102.6 + - - +
138A GLN* 1.3 64.7 + - - +
140A LEU* 3.8 16.1 - - + +
141A GLU* 3.3 31.9 + - - +
287A ALA* 4.1 12.8 - - + -
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Residues in contact with GLN 138 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80A GLN* 5.7 0.6 + - - -
134A SER 2.9 13.4 + - - +
135A LEU* 3.4 29.7 - - - +
137A ASP* 1.3 77.4 - - - +
139A ALA* 1.3 60.1 + - - +
141A GLU 3.3 1.7 + - - -
142A GLN* 3.2 49.7 + - - +
284A ALA* 3.3 28.6 + - - +
285A ALA* 5.7 1.2 - - - +
287A ALA* 3.8 4.6 - - + +
288A SER* 3.4 27.2 - - - +
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Residues in contact with ALA 139 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73A PHE* 4.3 3.5 - - - +
76A GLN* 4.2 7.6 - - + +
77A TYR* 3.8 25.8 - - - +
80A GLN* 3.6 27.8 - - - +
135A LEU 3.0 7.1 + - - +
136A ARG* 3.7 5.6 - - - +
138A GLN* 1.3 73.3 - - - +
140A LEU* 1.3 63.3 + - - +
141A GLU 3.4 0.2 - - - -
142A GLN* 3.6 11.7 + - - +
143A TYR* 3.2 20.8 + - - +
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Residues in contact with LEU 140 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77A TYR* 3.7 44.1 - - + +
136A ARG 2.9 16.4 + - - +
137A ASP* 3.8 18.4 - - + +
138A GLN 3.3 0.2 - - - -
139A ALA* 1.3 77.4 - - - +
141A GLU* 1.3 60.8 + - - +
143A TYR* 3.2 19.2 + - + +
144A LEU* 2.9 39.9 + - + +
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Residues in contact with GLU 141 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137A ASP* 3.3 21.1 + - - +
138A GLN 3.3 0.4 + - - -
140A LEU* 1.3 81.5 - - - +
142A GLN* 1.3 59.9 + - - +
144A LEU* 3.8 13.7 - - + +
145A ALA* 3.0 23.0 + - - +
280A HIS* 3.3 47.7 - - + +
283A MET* 3.2 46.7 - - + +
284A ALA* 3.8 8.3 - - + -
287A ALA* 5.0 2.4 - - - +
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Residues in contact with GLN 142 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73A PHE* 3.9 28.8 - - + -
138A GLN* 3.2 46.9 + - - +
139A ALA* 3.9 9.3 - - - +
140A LEU 3.3 0.2 - - - -
141A GLU* 1.3 74.2 - - - +
143A TYR* 1.3 56.7 + - - +
145A ALA* 3.8 6.8 - - - +
146A THR* 2.6 36.6 + - - -
281A GLN* 4.5 16.9 + - - +
284A ALA* 3.9 11.9 - - + +
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Residues in contact with TYR 143 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70A VAL* 3.6 39.6 - - + +
73A PHE* 3.9 20.3 - - + +
74A ARG* 3.6 42.6 + - + -
77A TYR* 4.7 5.8 - + + -
139A ALA 3.2 12.5 + - - +
140A LEU* 3.2 24.1 + - + +
142A GLN* 1.3 75.4 - - - +
144A LEU* 1.3 82.9 + - + +
146A THR* 3.2 2.9 + - - -
147A GLU* 2.9 36.9 + - + +
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Residues in contact with LEU 144 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140A LEU* 2.9 35.8 + - + +
141A GLU* 3.8 22.2 - - + +
143A TYR* 1.3 99.5 - - + +
145A ALA* 1.3 59.8 + - - +
147A GLU* 3.5 21.1 + - - +
148A GLN* 3.3 18.5 + - - +
280A HIS* 3.5 34.1 + - + +
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Residues in contact with ALA 145 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A GLU 3.0 18.1 + - - +
142A GLN 3.8 2.0 - - - +
143A TYR 3.2 0.2 - - - -
144A LEU* 1.3 74.6 - - - +
146A THR* 1.3 57.8 + - - +
147A GLU 3.2 0.2 - - - -
148A GLN* 3.1 2.4 + - - +
149A ALA* 2.9 24.0 + - - +
277A GLU* 3.3 37.4 - - + +
280A HIS* 3.6 12.1 - - + +
281A GLN* 3.5 26.9 - - + +
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Residues in contact with THR 146 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66A ALA 4.8 1.2 - - - +
69A ASN* 3.8 17.9 - - + +
70A VAL* 3.4 34.5 - - + +
73A PHE* 3.5 29.3 - - + -
142A GLN 2.6 23.6 + - - -
143A TYR 3.2 5.6 + - - -
145A ALA* 1.3 73.3 - - - +
147A GLU* 1.3 64.6 + - - +
149A ALA* 3.4 9.6 + - + +
150A GLN 3.1 17.3 + - - -
281A GLN* 5.2 2.6 + - - +
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Residues in contact with GLU 147 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70A VAL* 4.1 19.9 - - + +
143A TYR* 2.9 25.3 + - + +
144A LEU* 3.5 28.6 - - - +
145A ALA 3.2 0.2 - - - -
146A THR* 1.3 78.3 - - - +
148A GLN* 1.3 67.2 + - + +
150A GLN* 3.5 10.6 + - - +
151A ARG* 3.4 47.1 + - - +
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Residues in contact with GLN 148 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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144A LEU 3.3 12.6 + - - +
145A ALA 3.1 7.9 + - - +
147A GLU* 1.3 81.9 + - - +
149A ALA* 1.3 59.4 + - - +
151A ARG* 3.0 37.0 + - - +
152A SER* 3.0 23.6 + - - -
273A PRO* 3.5 31.4 - - - +
276A LEU* 3.4 36.8 - - + +
277A GLU* 3.7 6.3 - - - +
280A HIS* 3.8 22.2 - - - +
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Residues in contact with ALA 149 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66A ALA* 5.1 1.3 - - - +
145A ALA 2.9 11.6 + - - +
146A THR* 3.7 13.2 - - + +
147A GLU 3.4 0.4 - - - -
148A GLN* 1.3 75.8 - - - +
150A GLN* 1.3 56.0 - - - +
152A SER* 3.4 5.5 + - - -
153A ALA* 2.9 27.7 + - - +
277A GLU* 3.5 34.2 + - - +
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Residues in contact with GLN 150 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63A LEU* 4.0 8.6 - - + +
66A ALA* 4.0 17.9 + - + +
67A ALA* 4.0 26.3 - - + +
70A VAL* 3.3 25.0 - - + +
146A THR 3.1 12.9 + - - +
147A GLU* 3.5 13.3 - - - +
149A ALA* 1.3 76.3 - - - +
151A ARG* 1.3 61.8 + - - +
153A ALA* 3.2 8.5 + - - +
154A GLN* 3.1 22.2 + - - +
450A TRP* 3.9 26.9 - - - -
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Residues in contact with ARG 151 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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147A GLU* 3.4 37.6 + - - +
148A GLN* 3.0 35.4 + - - +
150A GLN* 1.3 77.1 - - + +
152A SER* 1.3 59.9 + - - +
154A GLN* 3.6 3.1 + - - +
155A THR* 3.1 29.8 + - - +
273A PRO* 4.0 15.7 - - + -
450A TRP* 3.6 64.7 - - + +
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Residues in contact with SER 152 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148A GLN 3.0 7.4 + - - -
149A ALA* 3.7 11.2 - - - -
150A GLN 3.2 0.2 - - - -
151A ARG* 1.3 74.5 - - - +
153A ALA* 1.3 63.8 + - - +
155A THR* 3.0 18.5 + - - -
156A THR* 2.9 25.7 + - - -
273A PRO* 3.6 19.5 - - - +
274A ASP* 3.8 28.3 + - - +
277A GLU* 4.8 1.3 - - - -
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Residues in contact with ALA 153 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62A ASP 5.2 2.2 - - - +
63A LEU* 3.6 16.7 - - + +
66A ALA* 3.8 17.7 - - + -
149A ALA 2.9 13.9 + - - +
150A GLN 3.2 9.8 + - - +
152A SER* 1.3 77.9 - - - +
154A GLN* 1.3 56.6 + - - +
156A THR* 3.5 7.3 + - - +
157A LEU* 3.1 27.2 + - - +
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Residues in contact with GLN 154 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40A TRP* 4.4 0.2 - - - +
57A LEU* 3.6 29.7 - - + +
63A LEU* 3.5 19.0 - - + +
150A GLN* 3.1 11.5 + - - +
151A ARG 3.9 7.9 - - - +
152A SER 3.3 0.4 - - - -
153A ALA* 1.3 73.1 - - - +
155A THR* 1.3 56.2 + - + +
156A THR 3.1 1.3 - - - -
157A LEU* 2.9 3.3 + - - +
158A VAL* 2.8 37.6 + - + +
449A GLY 3.1 17.3 + - - +
450A TRP* 2.9 52.3 + - + +
476A NA 3.0 16.7 - - - -
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Residues in contact with THR 155 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151A ARG 3.1 15.9 + - - +
152A SER* 3.0 20.6 + - - -
154A GLN* 1.3 74.8 - - - +
156A THR* 1.3 59.6 + - - +
158A VAL* 4.0 4.5 - - - +
159A ALA* 3.3 23.4 + - - +
273A PRO* 4.5 5.4 - - + +
444A LYS* 3.7 17.9 + - - +
447A GLY 3.4 24.9 - - - +
448A GLY* 3.6 14.1 - - - -
449A GLY 3.5 18.6 + - - +
450A TRP* 3.9 12.1 - - + +
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Residues in contact with THR 156 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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152A SER* 2.9 20.4 + - - -
153A ALA* 3.6 7.6 - - - -
154A GLN 3.1 0.4 - - - -
155A THR* 1.3 77.6 + - - +
157A LEU* 1.3 60.0 + - - +
159A ALA* 3.4 2.8 + - - +
160A SER* 3.0 40.1 + - - +
444A LYS* 3.5 31.1 + - - +
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Residues in contact with LEU 157 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56A ALA* 3.6 17.0 - - + +
57A LEU* 4.5 5.6 - - + -
60A ASN* 3.4 47.3 - - + +
63A LEU* 3.7 24.9 - - + -
153A ALA 3.1 13.2 + - - +
154A GLN* 2.9 9.3 + - - +
156A THR* 1.3 74.7 - - - +
158A VAL* 1.3 60.4 + - + +
160A SER* 3.2 4.0 + - - -
161A VAL* 2.9 47.2 + - + +
237A LEU* 3.9 21.1 - - + +
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Residues in contact with VAL 158 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40A TRP* 4.3 12.1 - - + -
44A PHE* 3.5 30.1 - - + -
53A ILE* 4.1 26.5 - - + +
57A LEU* 4.3 7.0 - - + -
154A GLN* 2.8 29.5 + - + +
155A THR* 4.0 7.6 - - - +
157A LEU* 1.3 72.0 - - - +
159A ALA* 1.3 57.1 + - - +
161A VAL* 3.7 5.6 + - - +
162A ALA* 3.1 26.9 + - - +
443A TYR* 5.1 2.5 - - + -
449A GLY* 3.6 28.5 - - - +
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Residues in contact with ALA 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44A PHE* 5.4 0.7 - - - -
155A THR 3.3 16.1 + - - +
156A THR 3.7 3.8 - - - +
157A LEU 3.3 0.4 - - - -
158A VAL* 1.3 77.4 - - - +
160A SER* 1.3 60.1 + - - +
162A ALA* 3.5 1.7 + - - +
163A THR* 2.9 35.8 + - - -
440A VAL* 3.8 21.4 - - + +
441A ASN* 4.2 8.1 - - - +
444A LYS* 3.8 27.6 - - + +
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Residues in contact with SER 160 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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156A THR* 3.0 27.4 + - - +
157A LEU* 3.2 7.4 + - - -
159A ALA* 1.3 73.9 - - - +
161A VAL* 1.3 59.6 + - - +
163A THR* 3.5 5.5 + - - -
164A ALA* 2.9 30.3 + - - +
237A LEU* 3.4 27.7 - - - +
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Residues in contact with VAL 161 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A LEU* 4.2 7.9 - - + -
52A LEU* 4.5 5.6 - - + -
53A ILE* 3.9 31.9 - - + +
56A ALA* 3.7 26.2 - - + -
157A LEU* 2.9 31.3 + - + +
158A VAL* 4.0 4.3 - - - +
160A SER* 1.3 71.9 - - - +
162A ALA* 1.3 55.2 + - - +
164A ALA* 3.2 3.4 + - - +
165A TYR* 2.8 34.5 + - + +
234A LEU* 4.1 12.7 - - + +
237A LEU* 4.2 17.5 - - + -
238A LEU* 4.5 4.3 - - + -
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Residues in contact with ALA 162 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A PHE* 3.5 31.6 - - + -
49A LEU* 3.9 18.1 - - + +
53A ILE* 5.2 0.6 - - + +
158A VAL 3.1 16.9 + - - +
159A ALA 3.7 4.0 - - - +
161A VAL* 1.3 79.2 - - - +
163A THR* 1.3 56.4 + - - +
165A TYR* 3.4 1.9 + - - +
166A LEU* 3.0 37.6 + - + +
440A VAL* 3.9 11.7 - - + -
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Residues in contact with THR 163 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159A ALA 2.9 21.3 + - - -
160A SER* 3.8 6.1 - - - -
162A ALA* 1.3 73.9 - - - +
164A ALA* 1.3 59.4 + - - +
166A LEU* 3.3 8.3 + - - +
167A THR* 2.8 43.7 + - - +
437A THR* 4.2 30.3 - - + +
440A VAL* 4.0 11.8 - - - +
441A ASN* 4.4 5.4 + - - -
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Residues in contact with ALA 164 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160A SER 2.9 19.4 + - - +
161A VAL 3.6 4.0 - - - +
163A THR* 1.3 76.6 - - - +
165A TYR* 1.3 61.8 + - - +
167A THR* 3.5 5.9 + - - -
168A LEU* 3.1 24.6 + - - +
230A ASP* 4.8 5.3 - - - +
233A ALA* 5.0 4.5 - - + +
234A LEU* 3.8 23.5 - - + +
237A LEU* 3.6 19.3 - - + -
----------------------------------------------------------
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Residues in contact with TYR 165 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A ASP* 2.9 30.5 + - + -
48A GLN* 3.2 42.9 + - + +
49A LEU* 3.8 34.5 - - + -
52A LEU* 3.5 26.5 - - + -
161A VAL* 2.8 20.2 + - + +
162A ALA 3.6 3.4 - - - +
163A THR 3.3 0.2 - - - -
164A ALA* 1.3 75.2 - - - +
166A LEU* 1.3 66.3 + - + +
168A LEU* 3.5 8.7 + - + +
169A LYS* 3.0 49.9 + - + +
234A LEU* 4.1 16.1 - - + +
249A GLY* 4.2 3.8 - - - -
----------------------------------------------------------
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Residues in contact with LEU 166 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49A LEU* 5.3 5.8 - - + -
162A ALA* 3.0 29.3 + - + +
163A THR* 3.3 5.6 + - - +
165A TYR* 1.3 88.5 - - + +
167A THR* 1.3 55.8 + - - +
169A LYS* 3.3 7.5 + - + +
170A ALA* 2.8 36.2 + - - +
252A LEU* 4.5 9.0 - - + +
256A LEU* 4.1 28.3 - - + -
257A LEU* 5.9 3.6 - - + -
433A LEU* 3.7 13.9 - - + +
436A LEU* 4.0 26.9 - - + -
437A THR* 4.7 4.0 - - - +
440A VAL* 4.0 26.0 - - + -
----------------------------------------------------------
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Residues in contact with THR 167 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163A THR* 2.8 31.3 + - - +
164A ALA* 3.8 7.7 - - - -
166A LEU* 1.3 72.8 - - - +
168A LEU* 1.3 59.9 + - - +
170A ALA* 3.4 1.7 + - - +
171A ASP* 2.9 34.3 + - - +
230A ASP* 3.6 24.2 - - - +
433A LEU* 3.7 26.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU 168 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164A ALA 3.1 16.9 + - - +
165A TYR* 3.8 9.0 - - + +
167A THR* 1.3 75.4 - - - +
169A LYS* 1.3 58.3 + - - +
171A ASP* 3.4 1.0 + - - +
172A GLN* 2.9 49.8 + - - +
227A VAL* 3.4 39.3 - - + +
230A ASP* 3.9 19.7 + - + +
231A GLN* 3.7 25.8 - - + +
234A LEU* 4.2 23.3 - - + -
242A ILE* 4.9 3.8 - - + -
----------------------------------------------------------
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Residues in contact with LYS 169 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A GLN* 5.2 4.6 - - - +
165A TYR* 3.0 45.8 + - + +
166A LEU* 3.5 9.6 - - + +
168A LEU* 1.3 78.3 - - - +
170A ALA* 1.3 60.3 + - - +
172A GLN* 3.4 22.1 + - - +
173A ALA* 3.2 21.1 + - - +
249A GLY* 5.3 2.7 - - - -
250A LEU 3.0 32.1 - - - +
251A GLY* 4.1 6.7 - - - -
252A LEU* 3.9 25.2 - - + +
256A LEU* 5.7 2.2 - - + -
----------------------------------------------------------
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Residues in contact with ALA 170 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
166A LEU 2.8 19.7 + - - +
167A THR 3.8 4.0 - - - +
169A LYS* 1.3 73.1 - - - +
171A ASP* 1.3 61.2 + - - +
173A ALA* 3.3 1.4 + - - +
174A GLN* 3.0 30.1 + - + +
252A LEU* 3.6 23.3 - - + +
429A ILE* 3.4 14.9 - - + +
433A LEU* 4.0 28.3 - - + -
----------------------------------------------------------
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Residues in contact with ASP 171 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167A THR* 2.9 21.8 + - - +
168A LEU 3.9 3.1 - - - +
170A ALA* 1.3 77.8 - - - +
172A GLN* 1.3 60.4 + - - +
174A GLN* 3.4 14.6 + - - +
175A LEU* 3.0 23.0 + - - +
223A TYR* 4.5 9.1 - - + +
226A LEU* 3.6 25.3 - - + +
227A VAL* 3.3 23.7 - - + +
230A ASP* 2.4 29.4 - - - +
433A LEU* 5.8 1.7 - - - +
----------------------------------------------------------
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Residues in contact with GLN 172 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168A LEU* 2.9 38.7 + - + +
169A LYS* 3.6 23.5 + - - +
170A ALA 3.3 0.2 - - - -
171A ASP* 1.3 77.9 - - - +
173A ALA* 1.3 56.0 + - - +
175A LEU* 3.6 4.3 + - + +
176A GLN* 3.1 28.8 + - - +
227A VAL* 4.0 24.4 - - + +
231A GLN* 4.7 7.7 - - - +
----------------------------------------------------------
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Residues in contact with ALA 173 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169A LYS 3.2 12.7 + - - +
170A ALA* 3.6 10.1 - - - +
171A ASP 3.3 0.2 - - - -
172A GLN* 1.3 75.5 - - - +
174A GLN* 1.3 58.5 + - - +
176A GLN* 4.0 5.0 - - - +
177A LEU* 3.0 30.7 + - - +
252A LEU* 4.5 9.2 - - + -
429A ILE* 3.8 22.1 - - + +
----------------------------------------------------------
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Residues in contact with GLN 174 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170A ALA 3.0 21.0 + - - +
171A ASP* 3.6 15.9 + - - +
173A ALA* 1.3 77.6 - - - +
175A LEU* 1.3 51.3 + - - +
177A LEU* 3.6 4.9 + - - +
178A THR* 2.6 36.6 + - - -
223A TYR* 3.4 44.6 + - + -
426A GLN* 3.1 47.5 + - - +
429A ILE* 3.7 17.1 - - + +
430A THR* 3.5 13.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 175 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171A ASP 3.0 17.5 + - - +
172A GLN* 3.9 5.4 - - + +
173A ALA 3.3 0.2 - - - -
174A GLN* 1.3 74.9 - - - +
176A GLN* 1.3 64.8 + - - +
178A THR* 3.2 4.7 + - - -
179A LYS* 3.0 39.0 + - - +
220A LEU* 3.6 27.4 - - + +
223A TYR* 3.9 10.5 - - + -
224A THR* 3.4 38.1 - - - +
227A VAL* 4.1 22.0 - - + -
22B GLN* 3.7 23.6 - - - +
----------------------------------------------------------
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Residues in contact with GLN 176 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172A GLN 3.1 19.4 + - - +
173A ALA* 4.0 5.6 - - - +
175A LEU* 1.3 75.1 - - - +
177A LEU* 1.3 63.4 + - - +
179A LYS* 3.2 27.0 + - - +
180A ASP* 3.1 41.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 177 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173A ALA 3.0 17.1 + - - +
174A GLN* 3.8 10.5 - - - +
176A GLN* 1.3 75.9 - - - +
178A THR* 1.3 52.9 + - - +
180A ASP* 3.4 12.1 + - + +
181A THR* 2.6 40.8 + - - +
422A PHE* 4.1 18.8 - - + -
425A GLN* 3.6 51.8 - - + +
426A GLN* 4.1 10.3 - - + +
429A ILE* 4.1 17.0 - - + -
----------------------------------------------------------
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Residues in contact with THR 178 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174A GLN 2.6 23.7 + - - -
175A LEU 3.6 5.4 - - - -
176A GLN 3.2 0.4 - - - -
177A LEU* 1.3 74.4 - - - +
179A LYS* 1.3 60.3 + - - +
181A THR* 3.9 0.8 - - - -
182A LEU* 2.8 29.6 + - - +
216A ALA* 3.5 25.8 - - + +
219A THR* 4.1 2.9 - - - -
220A LEU* 3.6 25.8 - - + +
223A TYR* 3.3 19.0 - - - -
422A PHE* 3.6 26.1 - - + -
----------------------------------------------------------
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Residues in contact with LYS 179 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175A LEU* 3.0 38.1 + - - +
176A GLN* 3.2 31.2 + - - +
178A THR* 1.3 76.0 - - - +
180A ASP* 1.3 64.9 + - - +
182A LEU* 3.9 4.8 - - - +
183A GLY* 3.2 19.1 + - - -
220A LEU* 3.6 18.6 - - + -
224A THR* 5.9 0.2 - - - -
22B GLN* 3.1 32.6 + - - +
----------------------------------------------------------
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Residues in contact with ASP 180 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176A GLN* 3.1 35.9 + - - +
177A LEU* 3.6 13.3 - - + +
179A LYS* 1.3 77.7 - - - +
181A THR* 1.3 55.9 + - - +
183A GLY* 3.4 1.7 + - - -
184A THR* 2.8 32.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 181 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177A LEU* 2.6 29.7 + - - +
178A THR* 3.9 3.6 - - - -
180A ASP* 1.3 74.1 - - - +
182A LEU* 1.3 57.9 + - - +
184A THR* 3.3 6.5 + - - -
185A TYR* 2.9 75.0 + - + +
216A ALA* 5.1 1.1 - - - -
422A PHE* 3.6 33.4 - - + -
425A GLN* 4.8 2.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 182 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A THR 2.8 23.2 + - - +
179A LYS* 3.9 5.2 - - - +
181A THR* 1.3 72.3 - - - +
183A GLY* 1.3 58.4 + - - +
185A TYR* 3.4 2.0 + - + +
186A GLN* 3.0 38.3 + - - +
213A VAL* 3.6 33.9 - - + +
216A ALA* 3.8 20.5 - - + +
217A ARG* 4.0 26.9 - - + +
220A LEU* 3.7 28.5 - - + -
----------------------------------------------------------
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Residues in contact with GLY 183 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
179A LYS 3.2 13.8 + - - -
180A ASP 3.9 3.1 - - - -
181A THR 3.3 0.2 - - - -
182A LEU* 1.3 77.1 - - - +
184A THR* 1.3 57.3 + - - +
186A GLN* 3.4 6.1 + - - +
187A LYS* 3.0 31.0 + - - +
----------------------------------------------------------
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Residues in contact with THR 184 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180A ASP* 2.8 16.6 + - - +
181A THR* 3.6 11.2 - - - -
183A GLY* 1.3 75.9 - - - +
185A TYR* 1.3 65.7 + - + +
187A LYS* 3.7 11.6 + - + +
188A SER* 3.1 27.3 + - - -
397A TYR* 3.4 29.6 - - + +
418A GLN* 5.9 0.4 - - - +
----------------------------------------------------------
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Residues in contact with TYR 185 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181A THR* 2.9 42.8 + - + +
182A LEU* 3.8 4.9 - - - +
183A GLY 3.3 0.2 - - - -
184A THR* 1.3 81.3 - - + +
186A GLN* 1.3 60.3 + - - +
188A SER* 3.4 5.4 + - - -
189A PHE* 2.8 29.6 + - - +
209A ALA 5.0 1.0 - - - +
212A ALA* 3.4 36.1 - - + -
213A VAL* 3.6 17.5 - - + +
216A ALA* 3.7 17.9 - - + -
397A TYR* 5.8 0.4 - + - -
411A TYR* 5.6 0.5 + - - -
418A GLN* 3.2 64.3 + - + +
419A ARG* 4.4 0.7 + - - -
422A PHE* 3.7 12.0 - + - +
----------------------------------------------------------
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Residues in contact with GLN 186 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182A LEU* 3.0 28.5 + - - +
183A GLY* 3.8 6.5 - - - +
184A THR 3.4 0.2 - - - -
185A TYR* 1.3 74.5 - - - +
187A LYS* 1.3 65.6 + - - +
189A PHE* 3.3 5.3 + - + +
190A ASP* 3.0 43.9 + - - +
213A VAL* 4.0 11.8 - - + +
217A ARG* 2.8 30.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 187 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183A GLY 3.0 18.1 + - - +
184A THR* 3.7 11.7 - - + +
186A GLN* 1.3 77.2 - - - +
188A SER* 1.3 62.6 + - - +
190A ASP* 3.3 7.0 + - - +
191A LEU* 3.1 42.3 + - + +
----------------------------------------------------------
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Residues in contact with SER 188 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184A THR 3.1 15.8 + - - -
185A TYR* 3.6 7.6 - - - -
187A LYS* 1.3 81.4 - - - +
189A PHE* 1.3 61.4 + - - +
191A LEU* 3.4 9.0 + - - +
192A THR* 3.0 26.3 + - - -
397A TYR* 5.7 3.1 - - - -
401A ASP* 5.2 4.6 + - - -
411A TYR* 3.5 24.0 + - - -
414A LEU* 4.4 6.2 - - - +
418A GLN* 4.1 12.7 + - - -
----------------------------------------------------------
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Residues in contact with PHE 189 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185A TYR 2.8 21.0 + - - +
186A GLN* 3.6 7.4 - - + +
188A SER* 1.3 72.5 + - - +
190A ASP* 1.3 72.8 + - - +
192A THR* 3.2 4.7 + - - -
193A GLN* 2.8 51.0 + - + +
206A LEU* 3.5 27.5 - - + +
209A ALA* 3.7 18.6 - - + +
210A GLN* 3.6 42.8 - - + -
213A VAL* 4.0 15.5 - - + -
411A TYR* 5.2 0.2 + - - -
----------------------------------------------------------
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Residues in contact with ASP 190 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186A GLN* 3.0 31.7 + - - +
187A LYS* 3.7 6.7 + - - +
189A PHE* 1.3 90.9 - - - +
191A LEU* 1.3 58.0 + - + +
193A GLN* 3.1 10.6 + - - +
194A ARG* 2.9 58.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 191 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187A LYS* 3.1 37.4 + - + +
188A SER* 3.8 10.1 - - - +
189A PHE 3.4 0.2 - - - -
190A ASP* 1.3 73.6 - - + +
192A THR* 1.3 59.5 + - - +
194A ARG* 3.6 25.2 + - + +
195A SER* 3.1 26.5 + - - -
405A ARG* 5.6 9.6 - - - -
----------------------------------------------------------
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Residues in contact with THR 192 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A SER* 3.0 14.8 + - - -
189A PHE* 3.4 10.3 - - - -
191A LEU* 1.3 73.7 - - - +
193A GLN* 1.3 54.3 - - - +
195A SER* 3.1 6.0 + - - -
196A TYR* 2.7 33.6 + - - +
201A ALA* 3.8 17.9 - - + +
205A ASP 4.0 19.3 - - - +
206A LEU* 3.9 17.0 - - + -
209A ALA* 4.4 2.1 - - - +
404A TYR* 4.1 16.3 - - - +
411A TYR* 4.0 17.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN 193 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189A PHE* 2.8 29.7 + - + +
190A ASP* 3.3 15.0 - - - +
192A THR* 1.3 77.4 - - - +
194A ARG* 1.3 60.1 + - + +
196A TYR* 3.4 13.3 + - - -
197A ASP* 3.0 62.6 + - - +
206A LEU* 3.4 27.6 - - + +
----------------------------------------------------------
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Residues in contact with ARG 194 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190A ASP* 2.9 49.0 + - - +
191A LEU* 3.8 27.5 - - + +
193A GLN* 1.3 77.3 - - + +
195A SER* 1.3 61.9 + - - +
196A TYR 3.5 0.3 + - - -
197A ASP* 3.6 9.3 + - - +
198A VAL* 3.4 23.9 - - - +
----------------------------------------------------------
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Residues in contact with SER 195 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
191A LEU 3.1 18.9 + - - -
192A THR* 3.1 6.9 + - - -
194A ARG* 1.3 74.9 - - - +
196A TYR* 1.3 60.6 + - - +
198A VAL* 3.8 6.0 + - - -
200A VAL* 3.1 30.3 + - - +
201A ALA* 2.9 31.2 + - - +
404A TYR* 5.4 3.1 + - - -
----------------------------------------------------------
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Residues in contact with TYR 196 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192A THR 2.7 20.9 + - - +
193A GLN* 3.7 16.8 - - - +
194A ARG 3.2 0.2 - - - -
195A SER* 1.3 72.0 - - - +
197A ASP* 1.3 75.5 + - - +
198A VAL 3.0 4.7 - - - -
199A GLY* 3.1 15.1 + - - -
201A ALA* 3.0 29.8 - - + +
202A SER* 3.4 9.9 - - - -
203A ALA* 3.5 35.2 - - + +
206A LEU* 4.0 19.1 - - + -
----------------------------------------------------------
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Residues in contact with ASP 197 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
193A GLN* 3.0 39.9 + - - +
194A ARG* 3.6 8.8 + - - +
195A SER 3.5 0.4 - - - -
196A TYR* 1.3 83.5 - - - +
198A VAL* 1.3 61.0 + - + +
199A GLY 3.4 1.5 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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