Contacts of the helix formed by residues 338 - 406 (chain A) in PDB entry 3D5K
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 338 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A THR* 2.7 14.3 + - - -
337A ALA* 1.3 70.7 - - - +
339A SER* 1.3 61.6 + - - +
340A LEU 3.4 2.0 - - - -
341A ARG* 3.3 15.3 + - - +
342A ALA* 3.0 25.4 + - - +
78C ARG* 4.4 7.4 + - - -
82C ALA* 4.6 0.2 - - - -
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Residues in contact with SER 339 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A THR* 4.0 19.0 - - - -
337A ALA 3.2 3.6 + - - -
338A GLY* 1.3 77.1 - - - +
340A LEU* 1.3 59.0 + - - +
342A ALA* 3.4 6.0 + - - +
343A SER* 3.1 31.9 + - - -
78C ARG 4.8 1.6 - - - -
79C ILE* 4.0 18.8 + - - +
82C ALA* 3.6 24.5 - - - +
83C ASP* 4.8 4.9 + - - -
87C ARG* 4.1 16.0 + - - -
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Residues in contact with LEU 340 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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292A ALA 4.8 1.7 - - - +
295A ALA* 3.5 44.8 - - + +
296A PHE* 3.4 37.3 - - + -
333A PRO* 3.9 23.8 - - + -
336A THR* 4.0 19.2 + - + +
339A SER* 1.3 75.9 - - - +
341A ARG* 1.3 60.3 + - - +
343A SER* 3.6 9.8 + - - +
344A LEU* 3.1 22.3 + - - +
87C ARG* 3.3 28.9 - - - +
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Residues in contact with ARG 341 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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296A PHE* 3.7 15.2 - - + -
338A GLY* 3.3 15.9 + - - +
340A LEU* 1.3 76.7 - - - +
342A ALA* 1.3 54.3 + - - +
344A LEU* 3.2 6.7 + - + +
345A ASP* 2.7 61.6 + - - +
78C ARG* 4.4 12.3 - - - +
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Residues in contact with ALA 342 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338A GLY 3.0 16.2 + - - +
339A SER 3.6 5.4 - - - +
341A ARG* 1.3 77.6 - - - +
343A SER* 1.3 56.4 + - - +
345A ASP* 3.3 2.4 + - - +
346A TYR* 2.8 30.1 + - - +
75C ALA* 3.5 25.5 - - - +
78C ARG* 3.6 34.0 - - + +
79C ILE* 3.6 10.8 - - + +
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Residues in contact with SER 343 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292A ALA* 3.9 10.4 - - - +
339A SER* 3.1 18.5 + - - -
340A LEU* 3.9 11.8 - - - +
341A ARG 3.3 0.4 - - - -
342A ALA* 1.3 75.5 - - - +
344A LEU* 1.3 60.1 + - - +
346A TYR* 3.6 7.3 + - - +
347A ALA* 3.3 20.6 + - - +
79C ILE* 3.5 23.0 - - - +
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Residues in contact with LEU 344 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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289A ILE* 4.1 14.1 - - + -
292A ALA* 3.8 20.4 - - + +
293A ARG* 3.8 32.5 - - + +
296A PHE* 3.9 23.6 - - + -
340A LEU 3.1 18.4 + - - +
341A ARG* 3.2 8.0 + - + +
343A SER* 1.3 75.2 - - - +
345A ASP* 1.3 68.1 + - - +
347A ALA* 3.3 1.9 + - - +
348A LYS* 3.0 47.3 + - + +
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Residues in contact with ASP 345 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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341A ARG* 2.7 44.0 + - - +
342A ALA 3.5 2.5 - - - +
344A LEU* 1.3 76.0 - - - +
346A TYR* 1.3 52.1 + - - +
348A LYS* 3.2 12.9 + - - +
349A ILE* 2.8 50.4 + - + +
75C ALA* 4.7 0.7 - - + -
78C ARG* 2.5 37.0 + - - +
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Residues in contact with TYR 346 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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342A ALA 2.8 20.2 + - - +
343A SER* 3.7 9.9 - - - +
344A LEU 3.2 0.2 - - - -
345A ASP* 1.3 74.0 - - - +
347A ALA* 1.3 60.1 + - + +
349A ILE* 3.4 5.7 + - - +
350A GLN* 3.0 71.2 + - + +
72C ALA* 3.6 31.9 - - + -
75C ALA* 4.2 9.8 - - + +
76C GLN* 4.2 20.2 - - + -
79C ILE* 5.1 3.6 - - + -
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Residues in contact with ALA 347 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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285A ALA 4.4 2.8 - - - +
288A SER* 4.1 13.0 + - - +
289A ILE* 3.8 26.8 - - + +
292A ALA* 3.9 18.4 - - + -
343A SER 3.3 10.9 + - - +
344A LEU 3.3 8.6 + - - +
346A TYR* 1.3 82.8 - - + +
348A LYS* 1.3 58.4 + - - +
350A GLN* 3.3 6.5 + - - +
351A LYS* 3.1 23.2 + - - +
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Residues in contact with LYS 348 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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289A ILE* 4.2 27.6 - - + -
293A ARG* 4.7 14.4 - - - +
344A LEU* 3.0 43.9 + - + +
345A ASP* 3.6 15.2 + - - +
347A ALA* 1.3 72.7 - - - +
349A ILE* 1.3 65.9 + - + +
351A LYS* 3.4 3.2 + - - +
352A ASP* 3.2 28.0 + - - +
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Residues in contact with ILE 349 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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345A ASP* 2.8 36.4 + - + +
346A TYR* 3.7 6.1 - - - +
348A LYS* 1.3 74.0 - - + +
350A GLN* 1.3 57.6 + - - +
352A ASP* 3.2 10.5 + - - +
353A ILE* 3.0 31.3 + - + +
68C LEU* 3.2 35.0 - - + +
71C GLU* 3.6 48.5 - - + +
72C ALA* 3.7 17.5 - - + +
75C ALA* 4.5 4.5 - - + -
78C ARG* 5.9 0.4 - - - +
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Residues in contact with GLN 350 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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285A ALA* 4.2 7.4 - - + -
288A SER* 5.6 2.2 - - - +
346A TYR* 3.0 64.5 + - + +
347A ALA* 3.3 7.2 + - - +
349A ILE* 1.3 74.7 - - - +
351A LYS* 1.3 64.7 + - - +
353A ILE* 3.3 23.8 + - - +
354A ASN* 3.0 34.0 + - - +
69C ASN* 5.4 1.4 - - - +
72C ALA* 4.0 13.9 - - - +
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Residues in contact with LYS 351 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5A PRO* 4.8 6.5 - - - +
6A ASP 4.3 11.5 + - - -
7A TYR* 5.5 5.8 - - - +
8A GLN 5.7 2.1 - - - +
282A LEU* 3.5 21.2 - - + +
285A ALA* 3.9 13.6 - - - +
286A ASN* 2.8 38.1 + - - +
289A ILE* 3.6 30.4 - - + +
347A ALA 3.1 6.6 + - - +
348A LYS 3.6 8.3 - - - +
349A ILE 3.3 0.2 - - - -
350A GLN* 1.3 75.2 - - - +
352A ASP* 1.3 63.1 + - - +
354A ASN 3.2 2.1 + - - -
355A VAL* 3.0 36.9 + - + +
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Residues in contact with ASP 352 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348A LYS 3.2 13.7 + - - +
349A ILE* 3.4 10.6 - - - +
351A LYS* 1.3 81.0 - - - +
353A ILE* 1.3 61.0 + - - +
355A VAL* 3.5 12.7 + - - +
356A ALA* 3.3 17.7 + - - +
68C LEU* 3.6 32.6 - - + +
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Residues in contact with ILE 353 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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349A ILE* 3.0 31.6 + - + +
350A GLN* 3.5 32.3 - - - +
351A LYS 3.2 0.2 - - - -
352A ASP* 1.3 74.7 - - - +
354A ASN* 1.3 61.6 + - - +
356A ALA* 3.3 5.7 + - - +
357A GLN* 3.0 50.0 + - - +
65C VAL* 4.0 15.4 - - + +
68C LEU* 3.6 24.0 - - + +
69C ASN* 3.4 27.4 - - - +
72C ALA* 4.8 0.2 - - + -
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Residues in contact with ASN 354 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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278A ALA 4.7 3.0 - - - +
281A GLN* 3.7 30.1 + - - +
282A LEU* 3.6 23.7 - - + +
285A ALA* 3.3 19.3 - - + +
350A GLN* 3.0 26.8 + - - +
351A LYS 3.2 6.9 + - - +
353A ILE* 1.3 75.3 - - - +
355A VAL* 1.3 59.1 + - - +
357A GLN* 3.3 19.9 - - - +
358A TYR* 2.9 30.1 + - - +
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Residues in contact with VAL 355 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A PRO* 4.2 16.8 - - + -
282A LEU* 3.6 24.0 - - + -
351A LYS* 3.0 31.0 + - + +
352A ASP* 3.5 14.8 - - - +
354A ASN* 1.3 75.5 - - - +
356A ALA* 1.3 56.4 + - - +
358A TYR* 3.2 3.3 + - - +
359A GLU* 2.9 49.9 + - - +
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Residues in contact with ALA 356 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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352A ASP 3.3 10.5 + - - +
353A ILE* 3.3 8.7 + - - +
355A VAL* 1.3 79.8 - - - +
357A GLN* 1.3 57.4 + - - +
359A GLU* 3.9 10.3 - - - -
360A LYS* 2.9 28.8 + - - +
61C ARG* 3.5 20.2 - - - +
64C ARG* 4.5 18.4 - - + -
65C VAL* 3.9 18.8 - - + +
68C LEU* 4.9 1.8 - - + -
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Residues in contact with GLN 357 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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278A ALA* 4.4 5.8 - - + +
353A ILE* 3.0 34.6 + - - +
354A ASN* 3.3 25.2 - - - +
355A VAL 3.3 0.2 - - - -
356A ALA* 1.3 74.1 - - - +
358A TYR* 1.3 60.8 + - - +
360A LYS* 3.9 8.0 - - + +
361A ALA* 3.1 26.7 + - - +
65C VAL* 4.3 18.4 - - + +
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Residues in contact with TYR 358 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9A ARG* 3.5 27.3 + - + -
10A PRO* 4.0 44.0 - - + -
269A LEU* 3.7 16.7 + - + +
275A ILE* 3.5 38.3 - - + +
278A ALA* 4.0 13.6 - - + +
279A GLU* 3.6 28.3 - - + +
282A LEU* 4.4 9.9 - - + -
354A ASN 2.9 18.8 + - - +
355A VAL 3.6 3.4 - - - +
357A GLN* 1.3 75.0 - - - +
359A GLU* 1.3 65.4 + - - +
361A ALA* 3.4 3.6 + - - +
362A ILE* 3.3 42.4 + - + +
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Residues in contact with GLU 359 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A PRO* 4.4 17.6 - - + +
11A GLU 4.7 3.6 - - - +
13A PRO* 3.7 20.4 - - + +
355A VAL* 2.9 36.2 + - + +
356A ALA* 3.8 7.5 - - - +
358A TYR* 1.3 77.2 - - + +
360A LYS* 1.3 57.5 + - - +
362A ILE* 3.6 8.4 + - + +
363A GLN* 3.2 32.3 + - - +
61C ARG* 2.6 49.5 + - - +
64C ARG* 4.2 8.2 + - - -
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Residues in contact with LYS 360 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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356A ALA 2.9 20.4 + - - +
357A GLN* 3.9 9.2 - - + +
358A TYR 3.2 0.2 - - - -
359A GLU* 1.3 75.2 - - - +
361A ALA* 1.3 58.4 + - - +
363A GLN* 3.3 11.4 + - - +
364A THR* 2.8 49.0 + - - +
61C ARG* 3.7 16.6 - - + +
62C ASP* 2.8 42.9 + - - +
236C LEU* 5.2 10.8 - - + -
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Residues in contact with ALA 361 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272A ARG* 4.9 1.2 + - - -
274A ASP* 4.3 11.4 - - - +
275A ILE* 3.9 18.2 - - + +
278A ALA* 4.3 16.2 - - + -
357A GLN 3.1 17.5 + - - +
358A TYR 3.4 6.7 + - - +
360A LYS* 1.3 76.5 - - - +
362A ILE* 1.3 56.3 + - - +
364A THR* 3.8 5.6 - - - -
365A ALA* 3.0 28.9 + - - +
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Residues in contact with ILE 362 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A GLU 5.2 0.7 - - - +
12A ALA* 4.5 7.6 - - + +
13A PRO* 4.1 20.6 - - + -
14A VAL* 4.0 27.4 - - + -
265A PRO 5.9 1.8 - - - +
268A LEU* 5.0 6.2 - - + +
269A LEU* 3.7 22.7 - - + -
275A ILE* 4.0 28.7 - - + -
358A TYR* 3.3 44.1 + - + +
359A GLU* 3.8 5.6 - - + +
360A LYS 3.2 0.2 - - - -
361A ALA* 1.3 73.5 - - - +
363A GLN* 1.3 59.7 + - - +
365A ALA* 3.3 2.6 + - - +
366A PHE* 2.9 27.9 + - - +
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Residues in contact with GLN 363 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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13A PRO* 3.6 23.7 + - + +
14A VAL* 3.8 11.4 - - + -
359A GLU 3.2 17.0 + - - +
360A LYS* 3.3 9.3 + - - +
362A ILE* 1.3 75.5 - - - +
364A THR* 1.3 62.6 + - - +
366A PHE* 3.4 3.5 + - - +
367A GLN* 3.2 21.7 + - - +
61C ARG* 3.6 36.7 + - - +
235C VAL 5.8 0.4 - - - -
236C LEU* 3.9 22.6 - - + +
239C GLY* 2.8 44.2 + - - -
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Residues in contact with THR 364 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272A ARG* 5.4 3.8 - - - +
360A LYS* 2.8 40.8 + - - +
361A ALA* 3.8 7.1 - - - -
363A GLN* 1.3 70.7 - - - +
365A ALA* 1.3 64.1 + - - +
367A GLN* 3.2 11.5 + - - +
368A GLU* 3.2 42.4 + - + +
236C LEU* 3.8 19.5 - - + +
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Residues in contact with ALA 365 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268A LEU* 4.1 10.3 - - + -
272A ARG* 3.6 37.4 + - - +
275A ILE* 3.7 16.4 - - + -
361A ALA 3.0 18.7 + - - +
362A ILE 3.7 4.3 - - - +
364A THR* 1.3 76.2 - - - +
366A PHE* 1.3 61.7 - - - +
368A GLU* 3.4 1.7 + - - +
369A VAL* 3.2 31.0 + - - +
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Residues in contact with PHE 366 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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14A VAL* 3.8 28.5 - - + -
15A ALA* 3.8 23.3 - - + -
17A ALA 3.5 19.1 - - - -
18A TYR* 3.6 33.9 - + - -
19A PRO* 4.1 19.7 - - + -
265A PRO* 3.7 20.9 - - + -
268A LEU* 4.4 8.0 - - + +
362A ILE 2.9 16.8 + - - +
363A GLN 3.5 6.3 - - - +
365A ALA* 1.3 77.0 - - - +
367A GLN* 1.3 58.9 + - - +
369A VAL* 4.0 1.6 - - - +
370A ALA* 2.9 34.9 + - + +
232C ASN* 5.7 1.1 - - - -
235C VAL* 5.6 11.4 - - + -
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Residues in contact with GLN 367 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363A GLN 3.2 10.7 + - - +
364A THR* 3.2 11.4 + - - +
366A PHE* 1.3 80.6 - - - +
368A GLU* 1.3 75.8 + - - +
370A ALA* 3.4 4.6 + - - +
371A ASP* 3.0 56.6 + - - +
475A NA 3.7 5.8 - - - -
232C ASN* 4.0 29.8 - - + +
233C ALA* 4.5 4.3 - - - +
236C LEU* 3.7 28.5 - - + +
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Residues in contact with GLU 368 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272A ARG* 2.4 35.9 + - - -
364A THR* 3.2 31.1 + - - +
365A ALA 3.9 3.6 - - - +
366A PHE 3.3 0.2 - - - -
367A GLN* 1.3 94.6 - - - +
369A VAL* 1.3 58.1 + - - +
371A ASP* 3.9 3.6 - - - +
372A GLY* 3.1 21.8 + - - -
441A ASN 5.5 0.3 - - - +
442A LEU* 5.0 2.1 - - - +
444A LYS* 6.1 0.5 - - - -
445A ALA* 4.0 16.0 - - + +
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Residues in contact with VAL 369 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18A TYR* 3.7 39.0 - - + +
262A ALA* 5.2 1.1 - - + +
268A LEU* 4.2 7.9 - - + -
365A ALA 3.2 18.3 + - - +
368A GLU* 1.3 73.3 - - - +
370A ALA* 1.3 61.5 + - - +
372A GLY* 3.0 2.4 + - - -
373A LEU* 2.8 39.0 + - + +
442A LEU* 3.7 21.6 - - + +
445A ALA* 3.7 30.1 - - + +
446A LEU* 4.0 11.9 - - + -
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Residues in contact with ALA 370 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18A TYR* 4.7 2.6 - - + -
19A PRO* 3.8 24.9 - - + -
24A TYR* 3.2 12.5 - - - -
366A PHE* 2.9 24.3 + - + +
367A GLN* 3.7 2.0 - - - +
369A VAL* 1.3 77.1 - - - +
371A ASP* 1.3 55.9 + - - +
373A LEU* 3.4 7.0 + - - -
374A ALA* 3.0 23.9 + - - +
232C ASN* 3.4 27.8 - - - +
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Residues in contact with ASP 371 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367A GLN* 3.0 30.6 + - - +
368A GLU* 3.9 5.4 - - - +
370A ALA* 1.3 75.7 - - - +
372A GLY* 1.3 57.9 + - - +
374A ALA* 3.5 0.7 + - - +
375A ALA* 3.1 16.8 + - - +
475A NA 2.4 26.5 - - - -
229C GLN* 3.0 44.1 + - - +
232C ASN* 2.7 40.9 + - - +
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Residues in contact with GLY 372 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368A GLU 3.1 12.5 + - - -
369A VAL 3.0 8.9 + - - -
371A ASP* 1.3 77.4 - - - +
373A LEU* 1.3 55.5 + - - +
374A ALA 3.4 0.2 - - - -
375A ALA* 3.6 7.4 + - - +
376A ARG* 3.1 24.3 + - - +
438A SER* 4.8 7.5 - - - +
439A GLU* 5.2 1.7 - - - +
442A LEU* 3.7 28.7 - - - +
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Residues in contact with LEU 373 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18A TYR* 3.7 43.1 - - + -
19A PRO 5.9 0.2 - - - +
23A ALA 4.0 1.9 - - - +
24A TYR* 4.0 17.7 - - + -
25A GLY 5.1 1.0 + - - -
27A ASN* 5.0 4.7 - - - +
262A ALA* 3.7 24.7 - - + -
369A VAL* 2.8 25.6 + - + +
370A ALA* 3.8 6.1 - - - +
372A GLY* 1.3 74.1 - - - +
374A ALA* 1.3 59.2 + - - +
376A ARG* 3.3 19.8 + - - +
377A GLY* 2.9 26.0 + - - -
442A LEU* 4.3 16.4 - - + -
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Residues in contact with ALA 374 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A ALA* 3.6 7.3 - - + +
24A TYR* 3.6 22.4 - - + +
370A ALA 3.0 17.6 + - - +
371A ASP 3.6 5.6 - - - +
373A LEU* 1.3 74.9 - - - +
375A ALA* 1.3 55.5 + - - +
377A GLY 3.6 0.5 + - - -
378A THR* 2.5 38.5 + - - +
225C ARG* 3.8 5.9 - - + +
228C ALA* 4.1 10.8 - - + -
229C GLN* 4.1 18.8 - - + -
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Residues in contact with ALA 375 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371A ASP 3.1 16.7 + - - +
372A GLY 3.7 4.3 - - - +
373A LEU 3.3 0.2 - - - -
374A ALA* 1.3 74.1 - - - +
376A ARG* 1.3 64.2 + - - +
379A PHE* 3.1 43.1 + - + +
435A GLN* 5.6 0.6 - - - +
438A SER* 3.5 34.5 - - - +
225C ARG* 3.6 14.9 - - - +
229C GLN* 4.3 2.7 - - - +
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Residues in contact with ARG 376 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A THR* 6.3 0.6 - - - +
259A GLU* 4.1 28.4 + - - +
260A VAL* 2.6 44.0 + - - +
261A PRO* 4.6 1.2 - - - +
262A ALA* 4.6 8.5 - - - +
372A GLY 3.1 14.2 + - - +
373A LEU* 3.3 24.0 + - - +
375A ALA* 1.3 77.4 - - - +
377A GLY* 1.3 57.8 + - - +
378A THR 3.2 4.5 + - - -
379A PHE* 4.1 4.0 + - - +
380A THR* 4.2 14.0 + - - -
435A GLN* 5.9 0.4 + - - -
439A GLU* 3.4 41.5 + - - +
442A LEU* 3.5 19.0 - - - +
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Residues in contact with GLY 377 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A GLN 4.7 3.1 - - - +
23A ALA* 3.3 22.9 - - - +
24A TYR 5.3 0.7 - - - -
25A GLY* 4.4 12.8 - - - -
373A LEU 2.9 12.3 + - - -
374A ALA 3.6 0.4 + - - -
375A ALA 3.3 0.6 - - - -
376A ARG* 1.3 74.9 - - - +
378A THR* 1.3 63.6 + - - +
381A GLU* 3.5 14.1 - - - +
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Residues in contact with THR 378 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A GLN 5.0 0.7 - - - +
23A ALA* 3.8 25.8 - - + -
374A ALA 2.5 24.3 + - - +
375A ALA 3.5 0.5 + - - -
376A ARG 3.2 0.8 + - - -
377A GLY* 1.3 85.0 - - - +
379A PHE* 1.3 61.5 + - - +
380A THR 3.4 2.0 - - - -
381A GLU* 3.4 12.3 + - - +
382A GLN* 3.1 25.8 + - - +
221C ALA* 3.8 26.8 - - + +
224C THR* 4.1 6.7 - - + -
225C ARG* 3.3 27.5 + - + +
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Residues in contact with PHE 379 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375A ALA* 3.1 41.3 + - + +
376A ARG* 4.1 1.3 + - - +
378A THR* 1.3 74.8 - - - +
380A THR* 1.3 59.3 + - - +
382A GLN* 3.7 17.3 - - + -
383A LEU* 2.9 39.0 + - + +
431A ASP* 4.0 17.7 - - - -
434A ASN* 3.9 20.9 - - + -
435A GLN* 3.5 40.8 - - + +
438A SER* 3.8 11.9 - - - -
225C ARG* 3.3 44.6 - - - -
----------------------------------------------------------
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Residues in contact with THR 380 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A ARG 4.2 11.1 + - - -
378A THR 3.4 0.6 - - - -
379A PHE* 1.3 75.8 - - - +
381A GLU* 1.3 70.5 + - - +
383A LEU* 4.0 2.6 - - - +
384A GLN* 3.0 35.7 + - + +
435A GLN* 4.1 13.8 + - - +
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Residues in contact with GLU 381 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A GLY 3.5 23.2 - - - +
378A THR* 3.6 12.8 - - - +
379A PHE 3.3 0.2 - - - -
380A THR* 1.3 85.5 - - - +
382A GLN* 1.3 65.6 + - - +
384A GLN* 3.4 5.5 + - - +
385A ALA* 3.0 25.1 + - - +
217C ARG* 5.4 0.5 - - - +
221C ALA* 4.3 11.0 - - + -
----------------------------------------------------------
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Residues in contact with GLN 382 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378A THR 3.1 15.0 + - - +
379A PHE* 3.3 14.8 + - + +
381A GLU* 1.3 76.6 - - - +
383A LEU* 1.3 58.4 + - + +
385A ALA* 3.3 5.6 + - - +
386A GLN* 2.8 29.0 + - - +
431A ASP* 3.3 33.2 + - - +
218C ALA* 3.4 29.3 + - + +
221C ALA* 3.7 9.6 - - + +
222C GLN* 3.8 19.2 + - - +
225C ARG* 2.8 39.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 383 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379A PHE* 2.9 24.0 + - + +
380A THR* 4.2 3.1 - - - +
382A GLN* 1.3 73.8 - - - +
384A GLN* 1.3 61.3 + - - +
386A GLN* 3.7 4.3 - - - +
387A ARG* 2.8 40.6 + - + +
428A LEU* 3.6 28.4 - - + +
431A ASP* 3.8 16.2 - - + +
432A ARG* 3.6 30.7 - - + +
435A GLN* 3.2 44.2 - - + +
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Residues in contact with GLN 384 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A THR* 3.0 23.4 + - + +
381A GLU* 3.7 6.5 - - - +
383A LEU* 1.3 76.1 - - - +
385A ALA* 1.3 58.0 + - - +
387A ARG* 3.3 20.3 + - - +
388A ASP* 3.0 57.7 + - - +
391A LYS* 5.7 3.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA 385 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381A GLU 3.0 16.8 + - - +
382A GLN 3.5 4.3 - - - +
384A GLN* 1.3 76.7 - - - +
386A GLN* 1.3 56.4 + - - +
388A ASP* 3.4 9.7 + - - +
389A LEU* 2.9 27.9 + - - +
214C GLU* 3.7 14.8 - - - +
217C ARG* 4.0 21.5 - - + +
218C ALA* 3.6 27.8 - - - +
----------------------------------------------------------
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Residues in contact with GLN 386 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382A GLN 2.8 19.5 + - - +
383A LEU* 3.8 5.6 - - - +
384A GLN 3.3 0.2 - - - -
385A ALA* 1.3 70.0 - - - +
387A ARG* 1.3 59.5 + - - +
389A LEU* 3.3 25.1 + - - +
390A VAL* 3.0 32.7 + - - +
424A ALA* 2.7 37.6 + - - +
427A GLN* 3.5 15.9 - - - +
428A LEU* 3.8 24.5 - - + -
431A ASP* 3.6 23.8 - - - +
218C ALA* 4.0 14.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 387 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A LEU* 2.8 31.8 + - - +
384A GLN* 3.3 19.7 + - - +
386A GLN* 1.3 69.3 - - - +
388A ASP* 1.3 65.1 + - - +
390A VAL* 3.3 7.5 + - - +
391A LYS* 3.0 57.7 + - - +
428A LEU* 3.8 24.7 - - + +
----------------------------------------------------------
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Residues in contact with ASP 388 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A GLN* 3.0 45.7 + - - +
385A ALA 3.6 1.6 - - - +
387A ARG* 1.3 76.5 - - - +
389A LEU* 1.3 57.7 + - - +
391A LYS* 3.6 17.1 + - - +
392A ALA* 3.0 29.8 + - - +
210C GLN* 4.6 3.7 + - - +
214C GLU* 3.4 23.5 - - - +
217C ARG* 3.8 16.8 + - - -
----------------------------------------------------------
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Residues in contact with LEU 389 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385A ALA 2.9 15.2 + - - +
386A GLN* 3.4 36.3 - - - +
387A ARG 3.2 0.2 - - - -
388A ASP* 1.3 74.3 - - - +
390A VAL* 1.3 56.9 + - - +
392A ALA* 3.3 2.2 + - - +
393A SER* 2.8 42.4 + - - +
420A SER* 6.4 0.2 - - - -
424A ALA* 4.3 10.8 - - + -
211C THR* 3.6 46.7 - - + +
214C GLU* 3.8 11.2 - - + +
215C GLY* 4.0 19.1 - - - +
----------------------------------------------------------
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Residues in contact with VAL 390 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A GLN 3.0 19.6 + - - +
387A ARG* 3.3 8.7 + - - +
389A LEU* 1.3 75.3 - - - +
391A LYS* 1.3 52.8 + - + +
393A SER* 3.3 1.5 + - - -
394A ASP* 2.8 35.3 + - + +
421A LEU* 3.4 8.5 - - + +
424A ALA* 3.6 38.8 - - + +
425A GLN* 3.9 23.6 - - + +
428A LEU* 3.9 22.0 - - + -
----------------------------------------------------------
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Residues in contact with LYS 391 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A GLN* 5.7 2.8 - - - +
387A ARG* 3.0 49.2 + - - +
388A ASP* 3.8 16.0 + - - +
390A VAL* 1.3 76.3 - - + +
392A ALA* 1.3 57.8 + - - +
394A ASP* 3.1 9.8 + - - +
395A GLU* 2.9 41.9 + - - +
210C GLN* 6.1 0.7 - - - +
----------------------------------------------------------
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Residues in contact with ALA 392 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388A ASP 3.0 18.5 + - - +
389A LEU* 3.7 6.1 - - - +
391A LYS* 1.3 75.6 - - - +
393A SER* 1.3 57.4 + - - +
395A GLU* 3.6 10.1 + - - +
396A TYR* 3.0 28.1 + - - +
207C ARG* 4.0 6.9 - - - +
210C GLN* 3.5 39.6 - - + +
211C THR* 4.0 15.4 + - - +
214C GLU* 4.8 0.9 - - + -
----------------------------------------------------------
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Residues in contact with SER 393 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389A LEU* 2.8 37.9 + - - +
390A VAL* 3.6 5.4 - - - -
392A ALA* 1.3 74.5 - - - +
394A ASP* 1.3 56.5 + - - +
396A TYR* 3.4 9.3 - - - +
397A TYR* 2.8 35.3 + - - +
417A ALA 4.6 1.0 - - - +
420A SER* 4.3 11.5 + - - -
421A LEU* 3.8 32.2 - - - +
424A ALA* 4.3 5.4 - - - +
211C THR* 3.8 6.5 + - - -
----------------------------------------------------------
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Residues in contact with ASP 394 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A VAL* 2.8 14.8 + - + +
391A LYS* 3.1 14.2 + - - +
393A SER* 1.3 74.1 - - - +
395A GLU* 1.3 65.3 + - + +
397A TYR* 3.3 4.9 + - - +
398A GLN* 3.1 44.2 + - - +
421A LEU* 3.6 22.7 - - + +
425A GLN* 6.1 0.7 - - - -
----------------------------------------------------------
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Residues in contact with GLU 395 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391A LYS* 2.9 27.2 + - - +
392A ALA* 3.8 5.6 - - - +
394A ASP* 1.3 76.0 - - - +
396A TYR* 1.3 57.1 + - - +
398A GLN* 3.4 11.2 + - - +
399A LEU* 3.0 36.3 + - + +
207C ARG* 3.4 50.2 + - - +
210C GLN* 5.9 0.2 - - - +
----------------------------------------------------------
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Residues in contact with TYR 396 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A ALA 3.0 19.4 + - - +
393A SER* 3.4 9.4 - - - +
394A ASP 3.2 0.2 - - - -
395A GLU* 1.3 73.8 - - - +
397A TYR* 1.3 59.2 + - - +
399A LEU* 3.4 1.1 + - - -
400A ALA* 2.9 26.6 + - + +
413A THR* 3.8 15.7 + - + +
416A ASP* 2.5 32.2 + - - +
417A ALA* 3.8 26.5 - - + -
420A SER* 4.5 12.3 - - - -
204C LEU* 3.4 25.1 - - + +
207C ARG* 4.2 13.9 - - + +
208C GLN* 3.3 43.1 + - + -
211C THR* 4.4 14.6 - - + -
412C LEU* 4.0 0.7 - - - +
415C LEU* 4.2 6.0 - - + +
419C ARG* 5.0 0.2 - - - -
----------------------------------------------------------
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Residues in contact with TYR 397 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184A THR* 3.4 29.5 + - + +
185A TYR* 5.8 0.2 - + - -
188A SER* 5.7 2.6 - - - -
393A SER 2.8 20.7 + - - +
394A ASP* 3.3 6.3 + - - +
396A TYR* 1.3 72.2 - - - +
398A GLN* 1.3 66.5 + - + +
400A ALA* 3.3 0.9 + - - +
401A ASP* 2.7 52.5 + - + +
414A LEU* 3.7 28.3 - - + -
417A ALA* 3.6 19.3 - - + +
418A GLN* 3.8 29.6 + - + -
421A LEU* 4.2 20.6 - - + -
----------------------------------------------------------
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Residues in contact with GLN 398 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394A ASP* 3.1 40.5 + - - +
395A GLU* 3.7 10.2 - - - +
396A TYR 3.3 0.2 - - - -
397A TYR* 1.3 86.7 - - + +
399A LEU* 1.3 61.8 + - + +
401A ASP* 3.4 4.6 + - - +
402A LYS* 3.2 49.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 399 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A GLU* 3.0 21.6 + - + +
398A GLN* 1.3 75.7 - - + +
400A ALA* 1.3 58.6 + - - +
402A LYS* 4.1 4.6 - - + +
403A ARG* 3.0 43.6 + - - +
203C ALA* 3.8 26.9 - - + +
204C LEU* 3.7 38.4 - - + +
207C ARG* 3.8 19.5 - - + +
----------------------------------------------------------
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Residues in contact with ALA 400 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A TYR* 2.9 19.9 + - + +
397A TYR 3.7 3.6 - - - +
399A LEU* 1.3 76.9 - - - +
401A ASP* 1.3 61.1 + - - +
403A ARG* 3.6 5.9 + - - +
404A TYR* 3.2 23.4 + - - +
409A ASP* 5.4 2.0 - - - +
410A ASN 5.6 0.3 - - - +
413A THR* 4.1 9.4 - - + +
414A LEU* 4.1 21.1 + - - +
417A ALA* 4.0 17.9 - - + -
204C LEU* 3.8 14.7 - - + +
----------------------------------------------------------
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Residues in contact with ASP 401 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A SER* 5.2 4.7 + - - -
397A TYR* 2.7 41.4 + - + +
398A GLN* 3.7 7.9 - - - +
399A LEU 3.3 0.2 - - - -
400A ALA* 1.3 72.7 - - - +
402A LYS* 1.3 60.6 + - - +
404A TYR* 3.4 9.9 + - - +
405A ARG* 2.7 50.0 + - - +
414A LEU* 3.9 27.3 - - + +
----------------------------------------------------------
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Residues in contact with LYS 402 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398A GLN* 3.2 39.7 + - - +
399A LEU* 4.1 4.7 - - + +
401A ASP* 1.3 76.6 - - - +
403A ARG* 1.3 63.8 + - - +
405A ARG* 3.5 33.6 + - - +
406A THR* 2.6 36.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 403 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399A LEU* 3.0 34.4 + - - +
400A ALA* 3.8 6.3 - - - +
402A LYS* 1.3 77.3 - - - +
404A TYR* 1.3 56.7 + - - +
406A THR* 4.8 0.2 - - - -
407A GLY 3.7 0.7 + - - -
408A VAL* 3.0 46.2 + - + +
409A ASP* 2.7 55.5 + - + +
202C SER* 4.2 19.4 + - - -
203C ALA* 4.5 3.8 - - - +
204C LEU* 3.7 44.4 - - - +
----------------------------------------------------------
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Residues in contact with TYR 404 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192A THR* 4.1 13.0 - - + +
195A SER* 5.4 2.4 + - - -
201A ALA* 3.9 14.0 - - - +
205A ASP* 3.3 33.6 + - - +
400A ALA 3.2 17.0 + - - +
401A ASP* 3.8 4.5 - - - +
402A LYS 3.2 0.4 - - - -
403A ARG* 1.3 73.2 - - - +
405A ARG* 1.3 64.1 + - + +
406A THR 3.0 4.3 - - - -
407A GLY* 2.8 27.4 + - - -
409A ASP* 3.3 22.7 - - + +
410A ASN* 4.1 7.6 - - - +
411A TYR* 3.5 52.0 - + + -
414A LEU* 4.2 14.4 - - + -
----------------------------------------------------------
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Residues in contact with ARG 405 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
191A LEU* 5.6 9.8 - - - +
401A ASP* 2.7 44.7 + - - +
402A LYS* 3.5 41.4 - - - +
404A TYR* 1.3 87.2 - - + +
406A THR* 1.3 59.6 + - - +
407A GLY 3.3 0.2 - - - -
----------------------------------------------------------
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Residues in contact with THR 406 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402A LYS* 2.6 26.4 + - - +
403A ARG* 4.8 0.2 - - - -
404A TYR 3.0 1.6 + - - -
405A ARG* 1.3 79.6 + - - +
407A GLY* 1.3 58.3 + - - +
408A VAL* 3.3 22.7 + - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il