Contacts of the helix formed by residues 338 - 406 (chain B) in PDB entry 3D5K
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 338 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78A ARG* 5.1 3.1 - - - +
82A ALA* 4.5 1.6 - - - -
336B THR* 3.0 5.2 + - - +
337B ALA* 1.3 79.3 - - - +
339B SER* 1.3 61.5 + - - +
340B LEU 3.4 2.2 - - - -
341B ARG* 3.9 7.8 + - - +
342B ALA* 3.4 23.0 + - - +
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Residues in contact with SER 339 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A ILE* 4.0 26.2 + - - +
82A ALA* 3.9 12.3 - - - +
83A ASP* 5.1 3.6 + - - -
87A ARG* 4.0 21.1 + - - -
336B THR* 3.3 23.8 + - - -
337B ALA 3.4 1.4 - - - -
338B GLY* 1.3 76.1 - - - +
340B LEU* 1.3 64.6 + - - +
342B ALA* 3.3 6.1 + - - +
343B SER* 3.1 26.0 + - - -
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Residues in contact with LEU 340 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A ARG* 3.6 20.9 - - - +
292B ALA 4.8 2.4 - - - +
295B ALA* 3.8 41.5 - - + +
296B PHE* 3.5 34.4 - - + -
333B PRO* 3.8 25.1 - - + -
336B THR* 3.8 23.1 + - + +
338B GLY 3.4 0.6 - - - -
339B SER* 1.3 79.8 - - - +
341B ARG* 1.3 59.0 + - - +
343B SER* 3.4 10.2 + - - +
344B LEU* 3.1 24.8 + - - +
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Residues in contact with ARG 341 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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296B PHE* 3.5 38.7 - - + -
338B GLY* 3.9 9.1 + - - +
339B SER 3.4 0.4 - - - -
340B LEU* 1.3 76.1 - - - +
342B ALA* 1.3 55.7 + - - +
344B LEU* 3.3 23.6 + - + +
345B ASP* 2.8 54.5 + - - +
348B LYS* 4.8 8.5 - - - +
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Residues in contact with ALA 342 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75A ALA* 3.6 18.5 - - - +
78A ARG* 4.0 20.2 - - + +
79A ILE* 3.7 18.8 - - + +
338B GLY 3.4 17.0 + - - +
339B SER 3.3 5.1 + - - +
340B LEU 3.3 0.2 - - - -
341B ARG* 1.3 76.8 - - - +
343B SER* 1.3 58.7 + - - +
345B ASP* 4.1 8.7 - - - -
346B TYR* 2.9 29.5 + - - +
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Residues in contact with SER 343 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A ILE* 3.5 24.0 - - - +
292B ALA* 4.2 9.6 - - - +
339B SER* 3.1 15.2 + - - -
340B LEU* 3.5 13.7 - - - +
341B ARG 3.3 0.2 - - - -
342B ALA* 1.3 77.6 - - - +
344B LEU* 1.3 55.1 + - - +
346B TYR* 3.4 7.2 - - - +
347B ALA* 3.1 25.8 + - - +
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Residues in contact with LEU 344 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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289B ILE* 3.8 17.3 - - + -
292B ALA* 3.7 24.6 - - + +
293B ARG* 3.8 29.2 - - + +
296B PHE* 3.8 20.0 - - + -
340B LEU 3.1 14.3 + - - +
341B ARG* 3.6 36.3 - - - +
342B ALA 3.3 0.2 - - - -
343B SER* 1.3 75.0 - - - +
345B ASP* 1.3 60.2 + - - +
347B ALA* 3.3 4.3 + - - +
348B LYS* 2.9 49.7 + - + +
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Residues in contact with ASP 345 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75A ALA* 4.7 4.3 - - + -
78A ARG* 4.5 15.0 + - - +
341B ARG* 2.8 45.7 + - - +
342B ALA* 3.6 9.1 - - - +
344B LEU* 1.3 71.6 - - - +
346B TYR* 1.3 53.0 + - - +
348B LYS* 3.1 13.0 + - - +
349B ILE* 2.8 49.7 + - + +
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Residues in contact with TYR 346 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72A ALA* 3.4 44.9 - - + -
75A ALA* 4.0 5.6 - - + +
76A GLN* 3.8 22.6 + - + -
79A ILE* 5.0 5.2 - - + -
342B ALA 2.9 18.1 + - - +
343B SER* 3.4 9.6 - - - +
345B ASP* 1.3 75.9 - - - +
347B ALA* 1.3 59.0 + - + +
349B ILE* 3.3 10.8 + - - +
350B GLN* 3.0 60.0 + - + +
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Residues in contact with ALA 347 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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285B ALA 4.5 0.3 - - - +
288B SER* 4.0 17.0 + - - +
289B ILE* 3.7 29.8 - - + +
292B ALA* 4.0 18.2 - - + -
343B SER 3.1 14.1 + - - +
344B LEU* 3.3 9.2 + - + +
346B TYR* 1.3 79.3 - - + +
348B LYS* 1.3 61.6 - - - +
350B GLN* 3.5 7.0 + - - +
351B LYS* 3.4 16.6 + - - +
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Residues in contact with LYS 348 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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289B ILE* 4.1 28.0 - - + -
293B ARG* 4.7 14.7 - - - +
341B ARG* 4.8 7.1 - - - +
344B LEU* 2.9 43.7 + - + +
345B ASP* 3.1 15.6 + - - +
347B ALA* 1.3 72.8 - - - +
349B ILE* 1.3 65.0 + - + +
351B LYS* 3.6 4.4 + - - +
352B ASP* 3.0 29.1 + - - +
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Residues in contact with ILE 349 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68A LEU* 3.2 37.7 - - + +
71A GLU* 3.4 46.9 - - + +
72A ALA* 3.8 14.1 - - + +
74A ARG* 5.9 0.7 - - - +
75A ALA* 4.5 1.8 - - + -
345B ASP* 2.8 34.8 + - + +
346B TYR* 3.3 9.4 + - - +
348B LYS* 1.3 76.3 - - + +
350B GLN* 1.3 59.4 + - - +
352B ASP* 3.1 11.2 + - - +
353B ILE* 2.9 30.4 + - + +
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Residues in contact with GLN 350 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69A ASN* 5.1 1.6 - - - +
72A ALA* 3.8 19.6 - - - +
285B ALA* 4.2 8.5 - - + -
288B SER* 5.3 3.1 - - - +
346B TYR* 3.0 47.9 + - + +
347B ALA* 3.7 7.9 - - - +
348B LYS 3.4 0.2 - - - -
349B ILE* 1.3 75.5 - - - +
351B LYS* 1.3 57.3 + - - +
353B ILE* 3.3 33.0 + - - +
354B ASN* 2.9 41.4 + - - +
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Residues in contact with LYS 351 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5B PRO* 4.7 5.3 - - - +
6B ASP 4.3 10.9 + - - -
7B TYR* 5.5 6.7 - - - +
8B GLN 5.8 0.8 - - - +
282B LEU* 3.6 20.4 - - + +
285B ALA* 3.8 14.2 - - + +
286B ASN* 2.7 38.2 + - - +
289B ILE* 3.8 21.0 - - + +
347B ALA 3.4 10.3 + - - +
348B LYS 3.8 8.7 - - - +
349B ILE 3.3 0.6 - - - -
350B GLN* 1.3 77.8 - - - +
352B ASP* 1.3 60.3 + - - +
354B ASN* 3.2 3.6 + - - +
355B VAL* 2.8 39.4 + - + +
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Residues in contact with ASP 352 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68A LEU* 3.7 27.4 - - + +
348B LYS* 3.0 18.8 + - - +
349B ILE* 3.1 11.4 + - - +
351B LYS* 1.3 78.2 - - - +
353B ILE* 1.3 64.6 + - - +
355B VAL* 3.3 10.7 + - - +
356B ALA* 3.1 24.8 + - - +
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Residues in contact with ILE 353 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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65A VAL* 4.0 17.1 - - + +
68A LEU* 3.8 24.2 - - + -
69A ASN* 3.6 24.0 - - - +
72A ALA* 4.7 0.4 - - + -
349B ILE* 2.9 25.0 + - + +
350B GLN* 3.3 41.3 + - - +
352B ASP* 1.3 75.7 - - - +
354B ASN* 1.3 57.3 + - - +
356B ALA* 3.3 6.0 + - - +
357B GLN* 2.9 52.8 + - - +
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Residues in contact with ASN 354 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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278B ALA 4.4 2.6 - - - +
281B GLN* 3.5 33.6 + - - +
282B LEU* 3.8 23.4 - - + +
285B ALA* 3.5 16.3 - - + +
350B GLN* 2.9 33.8 + - - +
351B LYS 3.2 5.1 + - - +
353B ILE* 1.3 75.6 - - - +
355B VAL* 1.3 60.3 + - - +
357B GLN* 3.6 17.1 + - - +
358B TYR* 2.9 28.9 + - - +
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Residues in contact with VAL 355 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10B PRO* 4.1 17.9 - - + -
282B LEU* 3.5 23.8 - - + -
351B LYS* 2.8 33.6 + - + +
352B ASP* 3.6 12.3 - - - +
354B ASN* 1.3 73.3 - - - +
356B ALA* 1.3 58.2 + - - +
358B TYR* 3.2 7.1 + - - +
359B GLU* 2.9 49.4 + - - +
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Residues in contact with ALA 356 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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61A ARG* 3.4 24.5 - - + +
64A ARG* 4.5 19.3 - - + -
65A VAL* 3.8 19.1 - - + +
68A LEU* 4.8 2.0 - - + -
352B ASP 3.1 16.4 + - - +
353B ILE* 3.5 6.1 - - - +
355B VAL* 1.3 77.7 - - - +
357B GLN* 1.3 56.3 + - - +
359B GLU* 3.6 12.7 + - - +
360B LYS* 3.1 21.1 + - - +
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Residues in contact with GLN 357 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62A ASP* 5.9 1.6 - - - +
65A VAL* 4.3 18.8 - - + +
278B ALA* 4.4 7.2 - - + +
353B ILE* 2.9 40.3 + - - +
354B ASN* 3.6 20.4 - - - +
356B ALA* 1.3 74.2 - - - +
358B TYR* 1.3 64.4 - - - +
360B LYS* 3.4 8.3 + - + +
361B ALA* 3.0 25.1 + - - +
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Residues in contact with TYR 358 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7B TYR* 5.2 0.2 - - - -
9B ARG* 3.5 27.6 + - + -
10B PRO* 3.9 46.6 + - + -
11B GLU 5.6 0.4 - - - -
269B LEU* 4.3 9.5 + - - +
275B ILE* 3.6 33.9 - - + +
278B ALA* 3.9 16.2 - - + +
279B GLU* 3.7 34.6 + - + -
282B LEU* 4.4 7.4 - - + -
354B ASN 2.9 19.4 + - - +
355B VAL* 3.2 5.8 + - - +
357B GLN* 1.3 77.0 - - - +
359B GLU* 1.3 64.3 + - + +
361B ALA* 3.5 2.9 + - - +
362B ILE* 3.4 41.7 + - + +
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Residues in contact with GLU 359 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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61A ARG* 2.7 45.3 + - + +
64A ARG* 4.4 5.9 + - - -
10B PRO* 4.5 10.7 - - + +
11B GLU 4.4 11.0 - - - +
13B PRO* 3.7 27.4 - - + +
355B VAL* 2.9 35.1 + - + +
356B ALA* 3.7 9.3 - - - +
357B GLN 3.3 0.2 - - - -
358B TYR* 1.3 77.5 - - + +
360B LYS* 1.3 59.8 + - - +
362B ILE* 3.2 6.6 + - - +
363B GLN* 3.0 32.0 + - - +
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Residues in contact with LYS 360 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60A ASN* 6.4 0.4 - - - +
61A ARG* 3.9 14.1 - - + +
62A ASP* 3.4 40.2 + - - +
236A LEU* 5.1 11.0 - - + -
356B ALA 3.1 18.5 + - - +
357B GLN* 3.4 10.1 + - + +
359B GLU* 1.3 72.7 - - - +
361B ALA* 1.3 56.4 + - - +
363B GLN* 3.6 12.5 - - - +
364B THR* 2.8 52.7 + - - +
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Residues in contact with ALA 361 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272B ARG* 4.9 2.4 + - - -
274B ASP* 4.4 15.8 - - - +
275B ILE* 3.7 16.7 - - + +
278B ALA* 4.3 16.2 - - + -
357B GLN 3.0 17.0 + - - +
358B TYR 3.6 7.0 - - - +
359B GLU 3.3 0.2 - - - -
360B LYS* 1.3 76.2 - - - +
362B ILE* 1.3 56.5 + - - +
364B THR* 4.1 5.8 - - - -
365B ALA* 3.2 25.6 + - - +
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Residues in contact with ILE 362 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12B ALA* 4.4 4.7 - - + -
13B PRO* 4.3 18.2 - - + -
14B VAL* 3.9 28.3 - - + -
265B PRO 5.9 0.9 - - - +
268B LEU* 5.1 4.3 - - + +
269B LEU* 3.5 35.7 - - + -
275B ILE* 3.8 21.5 - - + -
358B TYR* 3.4 43.5 + - + +
359B GLU 3.2 6.6 + - - +
360B LYS 3.2 0.6 - - - -
361B ALA* 1.3 77.0 - - - +
363B GLN* 1.3 60.5 + - - +
365B ALA* 3.2 3.0 + - + +
366B PHE* 3.0 27.2 + - - +
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Residues in contact with GLN 363 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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61A ARG* 3.6 33.2 + - - +
235A VAL 5.8 0.7 - - - -
236A LEU* 3.7 21.1 - - + +
239A GLY* 2.9 44.8 + - - -
13B PRO* 3.5 31.8 + - + +
14B VAL* 3.9 10.3 - - + -
359B GLU 3.0 19.8 + - - +
360B LYS* 3.7 8.7 - - - +
362B ILE* 1.3 75.7 - - - +
364B THR* 1.3 61.2 + - - +
366B PHE* 3.3 3.6 + - - +
367B GLN* 3.1 22.5 + - - +
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Residues in contact with THR 364 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236A LEU* 3.6 23.1 - - + +
272B ARG* 5.5 2.9 - - - +
360B LYS* 2.8 39.0 + - - +
361B ALA* 4.1 6.0 - - - -
363B GLN* 1.3 71.8 - - - +
365B ALA* 1.3 61.1 + - - +
367B GLN* 3.4 9.8 + - - +
368B GLU* 3.1 43.9 + - - +
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Residues in contact with ALA 365 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268B LEU* 4.1 9.0 - - + -
272B ARG* 3.7 41.3 + - - +
275B ILE* 3.8 9.9 - - + -
361B ALA 3.2 19.5 + - - +
362B ILE 3.2 5.4 + - - +
364B THR* 1.3 73.4 - - - +
366B PHE* 1.3 66.2 + - - +
368B GLU* 3.5 2.7 + - - +
369B VAL* 3.1 31.3 + - - +
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Residues in contact with PHE 366 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232A ASN* 5.6 1.1 - - - -
235A VAL* 5.7 10.5 - - + -
14B VAL* 3.8 30.7 - - + -
15B ALA* 3.7 30.1 - - + -
17B ALA 3.7 16.4 - - - -
18B TYR* 3.7 33.3 - + - -
19B PRO* 4.0 20.9 - - + -
265B PRO* 3.9 9.6 - - + -
268B LEU* 4.4 8.4 - - + +
362B ILE 3.0 14.8 + - - +
363B GLN 3.3 5.6 + - - +
365B ALA* 1.3 76.0 - - - +
367B GLN* 1.3 61.5 + - - +
369B VAL* 3.5 3.9 + - - +
370B ALA* 3.0 34.8 + - + +
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Residues in contact with GLN 367 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232A ASN* 3.5 31.4 - - - +
233A ALA* 4.4 7.5 - - - +
236A LEU* 3.4 31.5 - - + +
363B GLN 3.1 13.1 + - - +
364B THR* 3.5 15.5 - - - +
365B ALA 3.3 0.2 - - - -
366B PHE* 1.3 80.1 - - - +
368B GLU* 1.3 67.6 + - - +
370B ALA* 3.9 4.4 - - - +
371B ASP* 2.7 62.6 + - - +
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Residues in contact with GLU 368 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272B ARG* 3.1 32.8 + - - -
364B THR* 3.1 32.8 + - - +
365B ALA 3.9 3.6 - - - +
366B PHE 3.3 0.2 - - - -
367B GLN* 1.3 88.2 - - - +
369B VAL* 1.3 65.8 + - - +
371B ASP* 3.6 4.6 + - - +
372B GLY* 3.1 18.9 + - - -
442B LEU* 4.9 0.9 - - - +
444B LYS* 5.7 4.8 - - - -
445B ALA* 4.1 16.6 - - + +
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Residues in contact with VAL 369 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18B TYR* 3.6 37.2 - - + +
262B ALA* 5.2 1.3 - - + -
268B LEU* 4.2 5.4 - - + -
365B ALA 3.1 19.7 + - - +
366B PHE 4.0 0.4 - - - +
368B GLU* 1.3 75.3 - - - +
370B ALA* 1.3 58.0 + - - +
372B GLY 3.2 1.6 + - - -
373B LEU* 2.9 37.8 + - + +
442B LEU* 3.5 16.9 - - + +
445B ALA* 3.9 22.2 - - + +
446B LEU* 3.8 28.9 - - + -
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Residues in contact with ALA 370 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232A ASN* 3.5 27.4 - - + +
18B TYR* 4.9 1.7 - - + -
19B PRO* 4.0 23.6 - - + -
24B TYR* 3.4 10.4 - - - -
366B PHE* 3.0 24.4 + - + +
367B GLN* 3.9 1.8 - - - +
369B VAL* 1.3 76.0 - - - +
371B ASP* 1.3 54.4 + - - +
373B LEU* 3.1 7.3 + - - -
374B ALA* 2.8 30.8 + - - +
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Residues in contact with ASP 371 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229A GLN* 2.8 53.8 + - - +
232A ASN* 2.9 29.6 + - - +
233A ALA* 5.8 0.5 - - - +
367B GLN* 2.7 42.2 + - - +
368B GLU* 3.8 5.8 - - - +
370B ALA* 1.3 75.4 - - - +
372B GLY* 1.3 57.9 + - - +
374B ALA 3.3 0.7 + - - -
375B ALA* 3.1 17.5 + - - +
----------------------------------------------------------
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Residues in contact with GLY 372 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368B GLU 3.1 14.7 + - - -
369B VAL 3.2 5.6 + - - -
371B ASP* 1.3 76.7 - - - +
373B LEU* 1.3 58.0 + - - +
375B ALA* 3.6 6.3 + - - +
376B ARG* 3.2 23.9 + - - +
438B SER* 4.4 16.4 - - - +
439B GLU* 5.3 1.0 - - - +
442B LEU* 3.9 20.7 - - - +
----------------------------------------------------------
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Residues in contact with LEU 373 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18B TYR* 4.1 24.5 - - + -
23B ALA 3.5 5.4 - - - +
24B TYR* 3.9 18.4 - - + -
25B GLY 5.0 0.7 + - - -
27B ASN* 5.1 4.5 - - - +
262B ALA* 4.0 28.3 - - + -
369B VAL* 2.9 31.7 + - + +
370B ALA* 3.1 7.8 + - - +
372B GLY* 1.3 76.4 - - - +
374B ALA* 1.3 62.5 + - - +
375B ALA 3.3 1.1 - - - -
376B ARG* 3.8 30.6 - - - +
377B GLY* 3.3 17.2 + - - -
442B LEU* 4.2 11.2 - - + -
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Residues in contact with ALA 374 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225A ARG* 4.0 4.6 - - + +
228A ALA* 3.7 29.4 - - + -
229A GLN* 3.8 16.2 - - + -
23B ALA* 3.3 19.2 - - + +
24B TYR* 3.7 7.8 - - + +
370B ALA 2.8 12.7 + - - +
371B ASP* 3.3 9.4 + - - +
373B LEU* 1.3 77.1 - - - +
375B ALA* 1.3 53.0 + - - +
378B THR* 2.7 28.5 + - - +
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Residues in contact with ALA 375 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225A ARG* 3.7 11.1 - - - +
229A GLN* 4.2 2.5 - - - +
371B ASP 3.1 15.0 + - - +
372B GLY 3.7 4.0 - - - +
373B LEU 3.3 0.2 - - - -
374B ALA* 1.3 76.6 - - - +
376B ARG* 1.3 58.5 + - - +
378B THR* 3.2 5.1 + - - -
379B PHE* 2.9 55.8 + - + +
438B SER* 3.7 27.4 - - - +
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Residues in contact with ARG 376 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259B GLU* 3.3 38.0 + - - +
260B VAL* 2.6 36.3 + - - +
261B PRO* 4.5 1.8 - - - +
262B ALA* 4.4 7.9 - - - +
372B GLY 3.2 14.6 + - - +
373B LEU* 3.9 26.4 - - - +
375B ALA* 1.3 81.0 - - - +
377B GLY* 1.3 59.0 + - - +
378B THR 3.4 0.5 + - - -
379B PHE* 4.1 2.6 + - - +
380B THR* 3.7 17.3 + - - -
439B GLU* 2.5 38.7 + - - +
442B LEU* 3.3 19.2 - - - +
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Residues in contact with GLY 377 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22B GLN 4.8 3.6 - - - +
23B ALA 3.4 21.8 - - - +
24B TYR 5.7 0.2 - - - -
25B GLY* 4.4 13.2 - - - -
373B LEU 3.3 8.4 + - - -
375B ALA 3.3 0.6 - - - -
376B ARG* 1.3 78.8 - - - +
378B THR* 1.3 60.3 + - - +
380B THR* 5.1 0.7 - - - -
381B GLU* 3.4 16.1 - - - +
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Residues in contact with THR 378 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221A ALA* 3.6 30.4 - - - +
224A THR* 4.0 7.0 - - + -
225A ARG* 3.2 28.5 + - - +
22B GLN 4.9 0.7 - - - +
23B ALA* 3.7 25.4 - - + -
374B ALA 2.7 24.0 + - - +
375B ALA 3.3 4.9 + - - -
377B GLY* 1.3 81.0 - - - +
379B PHE* 1.3 59.6 + - - +
380B THR 3.3 2.5 - - - -
381B GLU* 3.4 6.2 + - - +
382B GLN* 3.1 25.5 + - - +
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Residues in contact with PHE 379 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225A ARG* 3.5 30.1 - - - -
375B ALA* 2.9 40.4 + - + +
376B ARG* 5.0 2.0 - - - +
378B THR* 1.3 75.4 + - - +
380B THR* 1.3 65.6 + - - +
382B GLN* 3.7 28.7 - - + -
383B LEU* 3.0 34.1 + - + +
431B ASP* 3.7 20.0 - - + -
434B ASN* 3.6 27.8 - - + -
435B GLN* 3.6 42.8 - - + +
438B SER* 4.1 3.6 - - - -
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Residues in contact with THR 380 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376B ARG 3.7 15.3 + - - -
377B GLY 5.2 0.4 - - - -
378B THR 3.3 0.4 - - - -
379B PHE* 1.3 77.9 - - - +
381B GLU* 1.3 77.1 + - - +
383B LEU* 4.0 3.4 - - - +
384B GLN* 3.1 27.6 + - + +
435B GLN* 5.0 6.6 + - - +
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Residues in contact with GLU 381 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217A ARG* 5.2 1.0 - - - +
221A ALA* 4.3 11.7 - - + -
377B GLY 3.4 20.3 - - - +
378B THR* 3.4 5.3 + - - +
379B PHE 3.3 0.2 - - - -
380B THR* 1.3 91.4 + - - +
382B GLN* 1.3 60.8 + - - +
384B GLN* 3.7 6.1 - - - +
385B ALA* 3.0 30.0 + - - +
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Residues in contact with GLN 382 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218A ALA* 3.5 27.5 + - + +
221A ALA* 3.8 8.0 - - + +
222A GLN* 3.7 17.2 + - - +
225A ARG* 2.7 44.6 + - - +
378B THR 3.1 15.6 + - - +
379B PHE* 3.7 14.5 - - + +
380B THR 3.4 0.4 - - - -
381B GLU* 1.3 78.1 - - - +
383B LEU* 1.3 56.9 + - - +
385B ALA* 3.5 4.7 + - - +
386B GLN* 3.0 28.6 + - - +
427B GLN* 4.6 2.6 - - - +
431B ASP* 3.2 33.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 383 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379B PHE* 3.0 20.4 + - + +
380B THR* 4.1 3.4 - - - +
382B GLN* 1.3 74.3 - - - +
384B GLN* 1.3 61.6 + - - +
386B GLN* 3.9 2.3 - - - +
387B ARG* 2.9 38.7 + - + +
428B LEU* 3.8 20.9 - - + +
431B ASP* 3.8 15.0 - - + -
432B ARG* 3.7 34.1 - - + +
435B GLN* 3.4 46.2 - - + +
----------------------------------------------------------
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Residues in contact with GLN 384 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380B THR* 3.1 18.8 + - + +
381B GLU* 3.7 8.3 - - - +
382B GLN 3.3 0.2 - - - -
383B LEU* 1.3 76.8 - - - +
385B ALA* 1.3 54.2 + - - +
387B ARG* 3.4 14.9 + - - +
388B ASP* 3.0 69.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 385 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214A GLU* 3.7 17.6 - - - +
217A ARG* 3.8 18.6 - - + +
218A ALA* 3.6 32.8 - - + +
381B GLU 3.0 17.7 + - - +
382B GLN 3.8 0.4 - - - +
384B GLN* 1.3 77.2 - - - +
386B GLN* 1.3 56.6 + - - +
388B ASP* 3.8 5.6 - - - +
389B LEU* 3.0 27.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 386 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218A ALA* 4.0 14.1 - - - +
382B GLN 3.0 17.9 + - - +
383B LEU* 3.9 5.4 - - - +
384B GLN 3.3 0.2 - - - -
385B ALA* 1.3 73.9 - - - +
387B ARG* 1.3 61.3 + - - +
389B LEU* 3.4 23.3 + - - +
390B VAL* 3.1 32.1 + - - +
424B ALA* 3.0 31.9 + - - +
427B GLN* 3.4 27.1 - - - +
428B LEU* 3.7 31.4 - - + -
431B ASP* 3.9 12.7 - - - +
----------------------------------------------------------
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Residues in contact with ARG 387 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253B ASP* 4.6 21.4 + - - +
383B LEU* 2.9 24.3 + - + +
384B GLN* 3.7 15.9 + - - +
386B GLN* 1.3 76.8 - - - +
388B ASP* 1.3 60.9 + - - +
390B VAL* 3.2 8.8 + - - +
391B LYS* 3.0 27.4 + - - +
428B LEU* 4.1 22.6 - - + +
----------------------------------------------------------
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Residues in contact with ASP 388 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
210A GLN* 4.6 3.4 + - - +
214A GLU* 3.7 30.1 - - - +
217A ARG* 5.9 0.3 + - - -
384B GLN* 3.0 48.4 + - - +
385B ALA* 3.8 2.7 - - - +
387B ARG* 1.3 74.4 - - - +
389B LEU* 1.3 61.0 + - - +
391B LYS* 3.5 15.4 + - - +
392B ALA* 3.0 29.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 389 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211A THR* 3.4 40.2 - - - +
214A GLU* 3.7 10.9 - - + +
215A GLY* 4.2 16.2 - - - +
385B ALA 3.0 18.7 + - - +
386B GLN* 3.5 33.2 - - - +
387B ARG 3.3 0.2 - - - -
388B ASP* 1.3 76.1 - - - +
390B VAL* 1.3 50.9 - - - +
392B ALA* 3.4 1.8 + - - +
393B SER* 2.8 44.9 + - - +
420B SER* 5.9 0.9 - - - +
424B ALA* 4.1 14.8 - - + -
----------------------------------------------------------
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Residues in contact with VAL 390 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386B GLN 3.1 20.1 + - - +
387B ARG* 3.2 9.8 + - - +
389B LEU* 1.3 75.4 - - - +
391B LYS* 1.3 58.2 + - - +
393B SER* 3.3 6.2 + - - -
394B ASP* 2.9 29.6 + - + +
421B LEU* 3.8 5.1 - - + +
424B ALA* 3.7 33.2 - - + +
425B GLN* 4.1 23.8 - - + +
428B LEU* 4.0 20.9 - - + -
----------------------------------------------------------
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Residues in contact with LYS 391 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A ARG* 4.3 18.6 - - - +
210A GLN* 5.2 9.1 - - - +
387B ARG 3.0 15.2 + - - +
388B ASP* 3.7 14.8 - - - +
390B VAL* 1.3 78.0 - - - +
392B ALA* 1.3 62.6 + - - +
394B ASP* 3.3 7.3 + - - +
395B GLU* 3.2 39.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA 392 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A ARG* 4.4 6.7 - - - +
210A GLN* 3.7 35.8 - - + +
211A THR* 3.9 20.4 - - + +
214A GLU* 4.9 0.9 - - + -
388B ASP 3.0 17.9 + - - +
389B LEU* 3.8 4.5 - - - +
391B LYS* 1.3 77.3 - - - +
393B SER* 1.3 56.4 + - - +
395B GLU* 3.4 8.0 + - - +
396B TYR* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 393 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211A THR* 3.8 13.0 - - - +
389B LEU* 2.8 31.8 + - - +
390B VAL* 3.6 6.7 - - - -
391B LYS 3.3 0.2 - - - -
392B ALA* 1.3 74.5 - - - +
394B ASP* 1.3 58.4 + - - +
396B TYR* 3.5 9.1 + - - +
397B TYR* 2.8 29.5 + - - +
417B ALA 4.5 1.6 - - - +
420B SER* 4.0 17.6 + - - -
421B LEU* 3.9 28.3 - - - +
424B ALA* 5.0 0.7 - - - -
----------------------------------------------------------
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Residues in contact with ASP 394 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390B VAL* 2.9 18.7 + - + +
391B LYS* 3.3 7.8 + - - +
393B SER* 1.3 74.0 - - - +
395B GLU* 1.3 69.4 + - - +
397B TYR* 3.5 8.8 + - - +
398B GLN* 3.1 39.6 + - - +
421B LEU* 3.6 25.6 - - + +
425B GLN* 6.3 0.7 - - - -
----------------------------------------------------------
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Residues in contact with GLU 395 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A ARG* 4.0 42.3 + - + +
391B LYS* 3.2 29.0 + - + +
392B ALA 3.7 5.6 - - - +
394B ASP* 1.3 78.8 - - - +
396B TYR* 1.3 64.2 + - - +
398B GLN* 3.2 20.3 + - - +
399B LEU* 3.1 33.8 + - + +
----------------------------------------------------------
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Residues in contact with TYR 396 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A LEU* 3.7 20.4 - - + -
207A ARG* 4.2 14.9 - - + +
208A GLN* 3.3 45.2 + - + -
211A THR* 4.4 16.8 - - + -
412A LEU* 4.0 2.9 - - - +
415A LEU* 4.5 4.9 - - + +
419A ARG* 5.1 0.2 - - - -
392B ALA 2.9 18.8 + - - +
393B SER* 3.6 7.4 - - - +
395B GLU* 1.3 76.6 - - - +
397B TYR* 1.3 61.0 + - - +
399B LEU* 4.1 3.6 - - - +
400B ALA* 3.1 19.6 + - - +
413B THR* 3.5 15.3 + - + +
416B ASP* 2.7 29.8 + - - +
417B ALA* 3.6 31.4 - - + -
420B SER* 4.3 10.3 - - - -
----------------------------------------------------------
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Residues in contact with TYR 397 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184B THR* 4.7 18.4 + - - +
185B TYR* 6.0 0.7 - + - -
188B SER* 5.7 2.6 - - - -
393B SER 2.8 18.7 + - - +
394B ASP* 3.6 9.2 - - - +
395B GLU 3.3 0.2 - - - -
396B TYR* 1.3 77.3 - - - +
398B GLN* 1.3 75.7 + - + +
400B ALA* 3.9 1.6 - - - +
401B ASP* 3.0 39.5 + - + +
414B LEU* 3.9 18.3 - - + +
417B ALA* 3.7 14.3 - - - +
418B GLN* 3.8 37.2 + - + -
421B LEU* 3.9 23.1 - - + -
----------------------------------------------------------
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Residues in contact with GLN 398 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394B ASP* 3.1 29.6 + - - +
395B GLU* 3.2 24.7 + - - +
397B TYR* 1.3 91.1 - - + +
399B LEU* 1.3 61.3 + - + +
401B ASP* 3.8 5.1 - - - +
402B LYS* 3.0 29.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 399 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203A ALA* 3.6 46.0 - - + +
204A LEU* 3.9 14.6 - - + +
207A ARG* 3.8 16.8 - - + +
395B GLU* 3.1 22.2 + - + +
396B TYR* 4.1 3.6 - - - +
398B GLN* 1.3 73.6 - - + +
400B ALA* 1.3 56.8 - - - +
402B LYS* 3.4 26.6 + - + +
403B ARG* 2.8 42.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 400 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A LEU* 3.8 16.5 - - + +
396B TYR* 3.1 17.0 + - + +
397B TYR 3.9 2.9 - - - +
399B LEU* 1.3 76.3 - - - +
401B ASP* 1.3 59.9 + - - +
403B ARG* 3.8 5.0 - - - +
404B TYR* 2.9 29.6 + - - +
409B ASP* 4.4 2.8 - - - +
410B ASN 5.5 0.2 - - - +
413B THR* 4.0 28.4 - - + +
414B LEU* 4.1 10.7 + - - +
417B ALA* 4.1 6.5 - - + -
----------------------------------------------------------
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Residues in contact with ASP 401 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188B SER* 5.1 1.9 + - - -
397B TYR* 3.0 34.9 + - + +
398B GLN* 3.8 6.7 - - - +
400B ALA* 1.3 73.9 - - - +
402B LYS* 1.3 65.8 + - - +
404B TYR* 3.3 1.7 + - - +
405B ARG* 3.1 54.6 + - - +
414B LEU* 3.5 32.3 - - + +
418B GLN* 5.7 0.2 + - - -
----------------------------------------------------------
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Residues in contact with LYS 402 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398B GLN 3.0 19.3 + - - +
399B LEU* 3.5 27.5 - - + +
401B ASP* 1.3 77.4 + - - +
403B ARG* 1.3 65.7 + - - +
405B ARG* 3.6 4.4 + - - +
406B THR* 2.7 36.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG 403 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A SER* 5.4 11.1 - - - -
204A LEU* 3.4 32.3 - - - +
399B LEU* 2.8 21.7 + - - +
400B ALA* 3.9 4.3 - - - +
401B ASP 3.3 0.2 - - - -
402B LYS* 1.3 86.2 - - - +
404B TYR* 1.3 61.5 + - - +
406B THR* 3.8 0.6 + - - -
407B GLY 3.4 1.4 + - - -
408B VAL* 3.2 59.9 + - + +
409B ASP* 2.7 53.2 + - - +
----------------------------------------------------------
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Residues in contact with TYR 404 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192B THR* 4.0 5.2 - - + +
195B SER* 5.8 2.5 - - - -
201B ALA* 3.5 17.2 - - + +
205B ASP* 2.8 38.1 + - - +
400B ALA 2.9 17.6 + - - +
401B ASP 3.3 3.5 + - - +
403B ARG* 1.3 74.5 - - - +
405B ARG* 1.3 100.0 + - - +
406B THR 3.1 2.5 - - - -
407B GLY* 3.1 14.6 + - - -
409B ASP* 3.6 19.7 + - - +
410B ASN* 4.3 5.8 - - - +
411B TYR* 3.5 45.0 - + + -
414B LEU* 4.1 9.6 - - + -
----------------------------------------------------------
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Residues in contact with ARG 405 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188B SER* 3.0 39.2 + - - +
191B LEU* 3.9 33.0 + - + +
192B THR* 3.2 24.4 + - - +
195B SER* 5.9 1.2 - - - -
401B ASP* 3.1 43.0 + - - +
402B LYS* 3.6 6.3 + - - +
404B TYR* 1.3 99.5 - - - +
406B THR* 1.3 58.5 + - - +
407B GLY 3.5 0.2 - - - -
411B TYR* 4.8 0.2 - - - -
414B LEU* 4.2 4.2 - - - +
----------------------------------------------------------
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Residues in contact with THR 406 (chain B).
Click here for Legend to table.
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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402B LYS* 2.7 26.5 + - - +
403B ARG* 4.1 4.9 - - - -
404B TYR 3.1 0.6 - - - -
405B ARG* 1.3 79.1 - - - +
407B GLY* 1.3 58.1 + - - +
408B VAL* 4.2 21.8 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il