Contacts of the helix formed by residues 410 - 446 (chain C) in PDB entry 3D5K
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 410 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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409A ASP* 5.4 6.3 + - - +
410A ASN* 5.8 3.6 - - - +
412A LEU* 6.3 0.4 - - - +
413A THR* 4.8 5.7 + - - -
410B ASN* 4.7 13.5 + - - +
412B LEU* 4.7 1.3 - - - +
205C ASP* 5.4 1.1 - - - +
400C ALA 5.6 0.3 - - - +
404C TYR* 4.1 11.1 - - - +
409C ASP* 1.3 82.3 - - - +
411C TYR* 1.3 61.0 + - - +
412C LEU* 3.9 21.9 - - + +
413C THR* 3.0 35.2 + - - -
414C LEU* 4.2 2.4 + - - +
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Residues in contact with TYR 411 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188C SER* 3.9 10.2 + - - -
192C THR* 4.0 16.9 + - - -
205C ASP* 3.2 29.9 + - + +
208C GLN* 3.3 28.2 + - + +
209C ALA* 3.2 38.5 - - + +
212C ALA* 5.5 0.5 - - - +
404C TYR* 3.6 34.1 - + + -
405C ARG* 4.9 1.1 - - - -
410C ASN* 1.3 70.3 - - - +
412C LEU* 1.3 59.7 + - - +
413C THR 3.2 2.2 - - - -
414C LEU* 3.1 23.5 + - + +
415C LEU* 2.8 43.9 + - + -
418C GLN* 3.5 18.1 + - - -
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Residues in contact with LEU 412 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A TYR* 4.0 6.7 - - - +
412A LEU* 3.8 34.1 - - + +
413A THR* 3.6 28.9 - - + +
416A ASP* 3.4 36.1 - - + +
412B LEU* 3.9 10.1 - - + -
208C GLN* 3.7 14.2 - - - +
410C ASN* 3.3 16.9 - - + +
411C TYR* 1.3 78.3 - - - +
413C THR* 1.3 56.0 + - - +
415C LEU* 3.4 8.1 + - + +
416C ASP* 2.9 30.7 + - + +
419C ARG* 5.0 3.6 - - - +
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Residues in contact with THR 413 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204B LEU* 3.9 28.2 - - + +
208B GLN* 4.4 4.0 - - - +
410B ASN* 4.8 4.3 + - - -
412B LEU* 3.4 19.5 - - - +
396C TYR* 3.5 13.7 + - + +
400C ALA* 4.0 15.7 - - + -
409C ASP* 3.8 14.9 + - + +
410C ASN* 3.0 22.8 + - - -
411C TYR 3.2 0.6 - - - -
412C LEU* 1.3 78.2 - - - +
414C LEU* 1.3 56.9 + - - +
416C ASP* 3.3 4.4 + - - +
417C ALA* 2.9 27.4 + - - +
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Residues in contact with LEU 414 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188C SER* 4.7 0.4 - - - +
397C TYR* 3.5 33.2 - - + +
400C ALA* 3.9 14.5 - - + +
401C ASP* 3.4 45.1 - - - +
404C TYR* 4.2 15.7 - - + -
405C ARG* 4.7 3.8 - - - +
410C ASN 4.2 1.4 + - - +
411C TYR* 3.1 37.6 + - + +
413C THR* 1.3 75.4 - - - +
415C LEU* 1.3 60.3 + - - +
417C ALA* 3.4 0.5 + - - +
418C GLN* 2.8 46.8 + - - +
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Residues in contact with LEU 415 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A TYR* 4.2 4.3 - - + +
416A ASP* 4.0 8.7 - - - +
208C GLN* 3.4 54.5 - - + +
211C THR* 5.2 5.4 - - + -
212C ALA* 4.2 10.3 - - + +
411C TYR* 2.8 21.7 + - + +
412C LEU* 3.5 7.9 - - + +
414C LEU* 1.3 73.8 - - - +
416C ASP* 1.3 66.6 + - - +
418C GLN* 3.2 21.4 + - + +
419C ARG* 3.1 63.7 + - + +
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Residues in contact with ASP 416 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412B LEU* 3.4 21.4 - - + +
415B LEU* 3.9 2.8 - - - +
419B ARG* 2.9 38.7 + - - -
396C TYR* 2.7 28.5 + - - +
412C LEU* 2.9 20.0 + - + +
413C THR 3.5 5.4 - - - +
415C LEU* 1.3 74.8 - - - +
417C ALA* 1.3 56.3 + - - +
419C ARG* 3.5 19.3 + - - +
420C SER* 3.0 34.9 + - - -
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Residues in contact with ALA 417 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393C SER 4.6 1.4 - - - +
396C TYR* 3.7 26.7 - - + -
397C TYR* 3.6 33.8 - - + +
400C ALA* 4.0 8.3 - - + -
413C THR 2.9 16.4 + - - +
414C LEU 3.7 4.5 - - - +
416C ASP* 1.3 73.4 - - - +
418C GLN* 1.3 65.0 + - - +
420C SER* 4.1 0.8 - - - -
421C LEU* 3.2 26.0 + - - +
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Residues in contact with GLN 418 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185C TYR* 3.0 42.6 + - + +
188C SER* 4.0 11.3 + - - -
212C ALA* 3.2 28.9 - - + +
397C TYR* 3.7 22.4 + - + -
411C TYR* 3.5 17.1 + - - -
414C LEU* 2.8 42.6 + - - +
415C LEU* 3.2 13.6 + - + +
417C ALA* 1.3 74.3 - - - +
419C ARG* 1.3 66.0 + - + +
421C LEU* 4.1 2.9 - - - +
422C PHE* 3.2 15.4 + - - +
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Residues in contact with ARG 419 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A TYR* 5.0 0.6 - - - -
416A ASP* 2.8 42.4 + - - -
419A ARG* 6.0 0.2 - - - +
420A SER* 3.3 17.4 + - - -
185C TYR* 4.3 1.8 + - - -
211C THR* 5.3 6.1 - - - +
412C LEU* 5.0 3.0 - - - +
415C LEU* 3.1 45.1 + - + +
416C ASP* 3.9 18.9 + - - +
418C GLN* 1.3 75.5 - - + +
420C SER* 1.3 56.6 + - - +
422C PHE* 3.2 5.4 + - - +
423C THR* 2.8 39.6 + - + +
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Residues in contact with SER 420 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211B THR* 6.2 2.9 - - - -
419B ARG* 3.9 19.6 + - - -
393C SER* 4.1 11.8 + - - -
396C TYR* 4.9 9.0 - - - -
416C ASP* 3.0 23.9 + - - -
417C ALA* 4.1 4.9 - - - -
418C GLN 3.4 0.2 - - - -
419C ARG* 1.3 77.8 - - - +
421C LEU* 1.3 62.4 + - - +
423C THR* 3.4 10.3 - - - +
424C ALA* 3.1 25.5 + - - +
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Residues in contact with LEU 421 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390C VAL* 3.5 15.5 - - + +
393C SER* 3.7 13.6 - - - +
394C ASP* 3.5 51.4 - - + +
397C TYR* 4.2 19.1 - - + -
417C ALA 3.2 16.4 + - - +
418C GLN* 4.1 3.1 - - - +
420C SER* 1.3 76.7 - - - +
422C PHE* 1.3 59.7 + - - +
424C ALA* 3.2 3.0 + - - +
425C GLN* 3.0 61.1 + - + +
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Residues in contact with PHE 422 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177C LEU* 4.1 17.5 - - + -
178C THR* 3.9 30.1 - - + -
181C THR* 3.8 32.8 - - + -
185C TYR* 3.6 15.9 - + - +
215C GLY 6.0 0.2 - - - -
216C ALA* 4.9 9.9 - - + -
219C THR* 4.2 16.4 - - + -
418C GLN 3.2 16.2 + - - +
419C ARG* 3.2 6.1 + - - +
421C LEU* 1.3 79.5 - - - +
423C THR* 1.3 61.9 + - - +
425C GLN* 3.5 8.0 + - - +
426C GLN* 3.2 61.6 + - + +
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Residues in contact with THR 423 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419C ARG* 2.8 26.2 + - + +
420C SER* 3.4 14.6 - - - +
422C PHE* 1.3 74.0 - - - +
424C ALA* 1.3 59.4 + - + +
426C GLN* 3.6 13.4 + - - +
427C GLN* 3.1 32.7 + - - +
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Residues in contact with ALA 424 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386C GLN* 3.1 25.5 + - - +
389C LEU* 4.0 22.2 - - + -
390C VAL* 3.6 18.0 - - + +
393C SER* 4.4 5.4 - - - +
420C SER 3.1 21.7 + - - +
421C LEU 3.2 4.7 + - - +
423C THR* 1.3 78.2 - - + +
425C GLN* 1.3 57.3 + - - +
427C GLN* 3.4 0.4 + - - -
428C LEU 3.0 21.1 + - - -
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Residues in contact with GLN 425 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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177C LEU* 3.8 35.1 - - + +
181C THR* 4.7 3.6 + - - +
390C VAL* 3.9 29.0 - - + +
394C ASP* 6.2 0.6 - - - -
421C LEU* 3.0 43.1 + - + +
422C PHE* 3.9 11.3 - - - +
423C THR 3.3 0.2 - - - -
424C ALA* 1.3 75.4 - - - +
426C GLN* 1.3 65.1 + - - +
427C GLN 3.2 0.4 - - - -
428C LEU* 3.3 12.9 + - - +
429C ILE* 3.4 19.1 + - - +
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Residues in contact with GLN 426 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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174C GLN* 3.0 42.0 + - - +
177C LEU* 4.3 2.5 - - + -
219C THR* 4.6 4.9 + - - +
223C TYR* 2.8 28.6 + - + +
422C PHE* 3.2 62.6 + - + +
423C THR* 3.8 11.2 - - - +
424C ALA 3.5 0.2 - - - -
425C GLN* 1.3 77.3 - - - +
427C GLN* 1.3 60.2 + - - +
429C ILE 3.5 1.2 + - - -
430C THR* 3.1 13.9 + - - -
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Residues in contact with GLN 427 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386C GLN* 3.5 22.7 - - - +
423C THR* 3.1 22.3 + - - +
424C ALA* 3.5 0.4 - - - +
425C GLN 3.2 0.2 - - - -
426C GLN* 1.3 75.3 - - - +
428C LEU* 1.3 57.7 - - - +
430C THR* 3.1 16.4 + - - +
431C ASP* 2.8 62.8 + - - +
434C ASN* 5.7 0.2 + - - -
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Residues in contact with LEU 428 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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383C LEU* 3.7 25.3 - - + +
386C GLN* 3.7 30.2 - - + +
387C ARG* 3.8 22.4 - - + +
390C VAL* 4.3 20.0 - - + -
424C ALA 3.0 14.6 + - - +
425C GLN* 3.3 9.6 + - - +
427C GLN* 1.3 76.1 - - - +
429C ILE* 1.3 57.7 + - + +
431C ASP* 3.5 3.1 + - - +
432C ARG* 3.0 31.2 + - + +
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Residues in contact with ILE 429 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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170C ALA* 3.4 36.6 - - + +
173C ALA* 3.8 33.9 - - + +
174C GLN* 3.5 24.9 - - + +
177C LEU* 4.1 10.8 - - + -
252C LEU* 4.4 7.8 - - + +
425C GLN 3.4 13.0 + - - +
426C GLN 3.7 7.4 - - - +
427C GLN 3.2 0.6 - - - -
428C LEU* 1.3 79.6 - - + +
430C THR* 1.3 61.3 + - - +
432C ARG* 3.4 6.8 + - - +
433C LEU* 3.1 21.7 + - - +
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Residues in contact with THR 430 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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174C GLN* 3.3 12.0 + - - +
426C GLN 3.1 13.7 + - - -
427C GLN* 3.1 21.9 + - - +
429C ILE* 1.3 76.1 - - - +
431C ASP* 1.3 58.8 + - - +
433C LEU* 3.2 15.0 + - + +
434C ASN* 2.9 48.1 + - - +
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Residues in contact with ASP 431 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379C PHE* 3.8 8.4 - - + -
382C GLN* 3.7 26.0 + - - +
383C LEU* 3.7 20.0 - - + -
386C GLN* 3.4 28.1 - - - +
427C GLN* 2.8 53.4 + - - +
428C LEU 3.8 1.3 - - - +
430C THR* 1.3 72.6 - - - +
432C ARG* 1.3 57.2 + - - +
434C ASN* 3.3 13.1 + - - +
435C GLN* 3.0 28.9 + - - +
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Residues in contact with ARG 432 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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252C LEU* 2.7 36.2 + - + +
253C ASP* 4.8 1.2 - - - -
254C GLN 2.9 30.5 + - - +
255C THR* 4.5 2.8 - - - +
256C LEU* 4.4 3.6 - - - +
383C LEU* 3.6 18.3 - - + +
428C LEU* 3.0 19.4 + - + +
429C ILE* 3.7 7.0 - - - +
430C THR 3.3 0.2 - - - -
431C ASP* 1.3 75.6 - - - +
433C LEU* 1.3 59.5 + - - +
435C GLN* 2.9 28.4 + - - +
436C LEU* 3.1 62.6 + - + +
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Residues in contact with LEU 433 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163C THR 4.8 0.2 - - - +
166C LEU* 3.4 39.0 - - + +
167C THR* 3.8 24.9 - - + +
170C ALA* 3.8 20.4 - - + -
171C ASP* 6.1 1.1 - - - +
252C LEU* 5.9 2.9 - - + +
429C ILE 3.1 13.2 + - - +
430C THR* 3.2 16.1 + - + +
432C ARG* 1.3 77.2 - - - +
434C ASN* 1.3 62.5 + - - +
436C LEU* 3.4 6.1 + - - +
437C THR* 2.8 47.4 + - - +
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Residues in contact with ASN 434 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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379C PHE* 3.7 19.6 - - + -
427C GLN* 5.7 0.2 + - - -
430C THR* 2.9 35.9 + - - +
431C ASP* 3.6 14.5 + - - +
433C LEU* 1.3 80.5 - - - +
435C GLN* 1.3 58.7 + - - +
437C THR* 3.9 5.8 + - - -
438C SER* 2.6 35.9 + - - +
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Residues in contact with GLN 435 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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375C ALA 5.5 0.7 - - - +
379C PHE* 3.7 39.9 - - + +
380C THR* 4.1 16.6 + - - +
383C LEU* 2.8 33.0 - - + +
431C ASP 3.0 17.8 + - - +
432C ARG* 2.9 29.2 + - - +
434C ASN* 1.3 75.6 - - - +
436C LEU* 1.3 57.3 + - + +
438C SER* 3.5 3.3 + - - -
439C GLU* 3.1 26.2 + - + +
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Residues in contact with LEU 436 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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166C LEU* 4.0 17.5 - - + -
252C LEU* 4.2 10.5 - - + -
256C LEU* 3.7 29.8 - - + +
257C LEU* 3.8 23.9 - - + +
432C ARG* 3.1 68.2 + - + +
433C LEU* 3.9 5.8 - - - +
435C GLN* 1.3 75.3 - - + +
437C THR* 1.3 60.3 + - - +
439C GLU* 3.4 5.6 + - + +
440C VAL* 3.0 35.2 + - - +
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Residues in contact with THR 437 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163C THR* 4.2 30.0 - - + +
166C LEU* 5.2 2.6 - - - +
167C THR* 5.3 0.2 + - - -
433C LEU* 2.8 40.4 + - - +
434C ASN* 3.9 6.5 - - - -
436C LEU* 1.3 75.4 - - - +
438C SER* 1.3 59.7 + - - +
440C VAL* 3.4 8.1 + - - +
441C ASN* 3.0 42.3 + - - +
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Residues in contact with SER 438 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229B GLN* 5.8 0.5 + - - -
372C GLY* 4.6 8.3 - - - -
375C ALA* 3.6 30.4 - - - +
379C PHE* 3.9 5.7 - - - -
434C ASN* 2.6 23.9 + - - +
435C GLN* 3.5 6.1 - - - -
436C LEU 3.3 0.2 - - - -
437C THR* 1.3 73.9 - - - +
439C GLU* 1.3 59.5 + - - +
441C ASN* 3.3 7.3 + - - +
442C LEU* 2.9 29.2 + - - +
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Residues in contact with GLU 439 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43C PHE* 4.0 9.2 - - + -
257C LEU* 3.7 28.0 - - + -
258C THR 5.2 2.2 - - - +
259C GLU* 5.5 4.3 - - - +
260C VAL* 4.1 12.1 + - - +
372C GLY 5.4 0.3 - - - +
376C ARG* 2.8 49.5 + - - +
435C GLN* 3.1 14.6 + - + +
436C LEU* 3.7 2.2 - - + +
437C THR 3.3 0.2 - - - -
438C SER* 1.3 79.6 - - - +
440C VAL* 1.3 61.6 + - - +
442C LEU* 3.3 13.4 + - - +
443C TYR* 3.0 21.7 + - - +
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Residues in contact with VAL 440 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C PHE* 4.2 6.5 - - - -
44C PHE* 4.2 20.4 - - + -
159C ALA* 3.9 23.7 - - + +
162C ALA* 3.8 22.2 - - + -
163C THR* 4.4 5.8 - - - +
166C LEU* 4.1 19.1 - - + -
257C LEU* 3.9 15.3 - - + -
436C LEU 3.0 18.4 + - - +
437C THR* 3.6 7.2 - - - +
438C SER 3.3 0.2 - - - -
439C GLU* 1.3 76.2 - - - +
441C ASN* 1.3 60.2 + - - +
443C TYR* 3.4 5.8 - - + +
444C LYS* 3.2 20.6 + - - +
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Residues in contact with ASN 441 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159C ALA* 4.2 11.3 - - - +
163C THR* 4.6 8.9 + - - -
368C GLU 6.1 0.2 - - - -
437C THR* 3.0 35.7 + - - +
438C SER* 3.8 6.1 - - - +
440C VAL* 1.3 75.7 - - - +
442C LEU* 1.3 55.3 + - - +
444C LYS* 3.1 35.8 + - - +
445C ALA* 2.8 35.0 + - - +
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Residues in contact with LEU 442 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
260C VAL* 4.9 0.9 - - + -
262C ALA* 6.4 0.2 - - - -
368C GLU 5.4 1.1 - - - -
369C VAL* 3.6 46.0 - - + +
372C GLY* 4.1 24.1 - - - +
373C LEU* 4.3 8.1 - - + +
376C ARG* 3.3 39.9 - - - +
438C SER 2.9 18.2 + - - +
439C GLU* 3.5 14.1 - - - +
441C ASN* 1.3 72.8 - - - +
443C TYR* 1.3 64.6 + - - +
445C ALA* 3.2 5.6 + - - -
446C LEU* 3.1 37.7 + - + +
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Residues in contact with TYR 443 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C ALA* 3.5 23.7 - - + +
38C ILE* 2.7 24.4 + - + -
39C GLY 3.5 0.2 - - - -
40C TRP* 3.4 15.7 + - + -
43C PHE* 3.6 59.7 - + + -
44C PHE* 4.5 11.7 - + - -
158C VAL* 4.8 3.6 - - + -
159C ALA* 6.6 0.2 - - + -
260C VAL* 4.1 22.7 - - + -
439C GLU* 3.0 7.2 + - - +
440C VAL* 3.4 10.3 - - + +
442C LEU* 1.3 76.5 - - - +
444C LYS* 1.3 61.3 + - + +
446C LEU* 3.2 11.5 + - - +
447C GLY 3.4 1.2 + - - -
448C GLY* 2.9 45.0 + - - -
449C GLY* 3.5 10.8 - - - -
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Residues in contact with LYS 444 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155C THR* 3.6 27.9 + - - +
156C THR* 4.4 13.2 - - + +
159C ALA* 3.7 22.6 - - + +
272C ARG* 4.9 6.4 + - - +
273C PRO* 5.9 0.3 - - - +
368C GLU* 5.8 6.3 - - - -
440C VAL 3.2 10.5 + - - +
441C ASN* 3.1 37.9 + - - +
443C TYR* 1.3 80.9 - - + +
445C ALA* 1.3 63.4 + - - +
446C LEU 3.2 1.4 + - - -
447C GLY* 3.3 10.6 + - - -
448C GLY* 3.4 14.5 + - - -
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Residues in contact with ALA 445 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268C LEU* 3.5 7.8 - - - +
272C ARG* 3.0 35.8 + - - +
368C GLU* 3.9 24.0 - - + +
369C VAL* 3.5 23.2 - - + +
441C ASN 2.8 20.3 + - - +
442C LEU* 3.2 9.6 + - - +
444C LYS* 1.3 76.9 - - - +
446C LEU* 1.3 57.8 + - - +
447C GLY 3.5 0.2 - - - -
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Residues in contact with LEU 446 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18C TYR* 4.3 5.4 - - - +
35C ALA* 3.7 23.1 - - + +
36C ALA* 4.1 12.0 + - - +
260C VAL* 3.8 13.7 - - + -
261C PRO 3.6 20.6 - - - +
262C ALA* 3.3 26.5 - - - +
267C ASP* 6.5 1.1 - - + -
268C LEU* 4.1 15.6 - - + +
271C ARG* 4.2 11.1 - - - +
272C ARG* 4.5 3.3 + - - -
369C VAL* 3.8 26.9 - - + -
442C LEU* 3.1 30.3 + - + +
443C TYR 3.2 2.2 + - - +
444C LYS 3.2 0.2 - - - -
445C ALA* 1.3 78.3 - - - +
447C GLY* 1.3 55.9 - - - +
448C GLY 3.9 0.2 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il