Contacts of the helix formed by residues 608 - 640 (chain B) in PDB entry 3F7F
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 608 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85B SER* 3.8 15.8 - - - -
466B TYR* 4.0 6.1 + - - -
604B ALA* 4.9 1.6 - - + -
606B LYS 3.2 3.5 + - - +
607B PHE* 1.3 75.8 - - - +
609B GLY* 1.3 63.2 + - - +
610B PHE* 3.0 13.2 + - - +
611B THR* 2.9 40.4 + - - +
612B SER* 3.0 21.7 + - - -
688B PHE 4.1 3.2 + - - -
689B GLY* 5.3 0.4 - - - -
690B VAL 4.2 7.4 - - - +
691B LYS* 2.7 40.4 + - - +
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Residues in contact with GLY 609 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11B LEU* 4.8 5.6 - - - -
14B TYR* 4.9 2.8 - - - -
85B SER 3.0 16.2 + - - -
86B ASP* 5.7 0.9 - - - -
607B PHE* 3.6 27.2 + - - -
608B ASP* 1.3 71.8 - - - +
610B PHE* 1.3 62.9 + - - +
612B SER* 3.4 1.6 + - - -
613B ILE* 3.1 26.7 + - - +
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Residues in contact with PHE 610 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9B ALA* 4.3 8.7 - - + -
11B LEU* 3.8 22.9 - - + -
84B LEU* 3.7 34.1 + - + +
85B SER* 4.2 6.6 + - - +
466B TYR* 3.6 49.6 - + - +
472B LEU* 3.8 30.3 - - + -
481B HIS* 4.8 4.0 - - + -
483B LEU* 4.4 8.7 - - + -
608B ASP* 3.0 7.4 + - - +
609B GLY* 1.3 78.6 - - - +
611B THR* 1.3 67.2 + - + +
613B ILE* 3.3 2.6 - - - +
614B ILE* 3.0 54.8 + - + +
692B PHE* 5.0 2.9 - + - -
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Residues in contact with THR 611 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466B TYR* 3.6 21.5 - - + +
608B ASP* 2.9 29.2 + - - +
610B PHE* 1.3 73.3 - - + +
612B SER* 1.3 59.9 + - - +
614B ILE* 3.7 8.2 - - - +
615B SER* 2.7 36.4 + - - -
689B GLY* 5.3 0.9 - - - -
690B VAL* 3.1 29.0 + - - +
691B LYS* 4.9 3.8 - - - -
692B PHE* 3.4 32.1 - - + -
701B TYR* 6.1 0.6 - - - -
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Residues in contact with SER 612 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14B TYR* 3.3 23.2 + - - -
607B PHE* 3.7 24.8 - - - -
608B ASP 3.0 19.2 + - - -
609B GLY 3.5 6.3 - - - -
610B PHE 3.1 0.4 - - - -
611B THR* 1.3 81.7 + - - +
613B ILE* 1.3 58.3 + - - +
615B SER* 3.4 5.0 - - - -
616B LEU* 2.9 24.3 + - - +
676B ALA* 4.2 5.9 - - - +
680B LEU* 4.1 21.1 - - - +
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Residues in contact with ILE 613 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8B ASP 5.0 0.7 - - - +
9B ALA* 4.5 21.1 - - + -
10B ASN 4.6 4.7 - - - +
11B LEU* 4.5 18.4 - - + -
13B GLN* 3.0 33.4 - - + +
14B TYR* 3.2 32.5 - - + +
609B GLY 3.1 19.1 - - - +
610B PHE* 3.3 11.7 - - - +
612B SER* 1.3 73.5 + - - +
614B ILE* 1.3 60.5 + - - +
616B LEU* 5.2 1.3 - - + -
617B GLU* 2.8 56.8 + - + +
672B LYS* 5.1 0.7 - - + -
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Residues in contact with ILE 614 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7B ILE* 4.1 14.7 - - + +
8B ASP 5.2 0.2 - - - -
9B ALA* 3.6 27.1 - - + -
483B LEU* 3.8 35.9 - - + -
610B PHE* 3.0 48.8 + - + +
611B THR* 3.7 5.6 - - - +
613B ILE* 1.3 76.7 - - - +
615B SER* 1.3 57.4 + - - +
617B GLU* 4.8 0.2 - - - -
618B SER* 2.5 40.9 + - - +
692B PHE* 4.0 20.0 - - + -
698B LEU* 4.4 7.4 - - + -
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Residues in contact with SER 615 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611B THR* 2.7 23.4 + - - -
612B SER* 3.4 4.7 - - - -
614B ILE* 1.3 73.8 - - - +
616B LEU* 1.3 61.3 + - - +
618B SER* 3.2 2.3 + - - -
619B LEU* 2.8 31.3 + - - +
680B LEU* 6.0 3.6 - - - -
692B PHE* 4.3 8.7 - - - -
698B LEU* 5.0 0.2 - - - +
701B TYR* 2.9 39.7 - - - -
702B ILE* 3.6 14.5 - - - +
705B LEU* 4.2 7.2 - - - -
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Residues in contact with LEU 616 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14B TYR* 3.6 31.6 - - + +
612B SER 2.9 7.9 + - - +
613B ILE* 3.9 3.4 - - + +
615B SER* 1.3 76.3 - - - +
617B GLU* 1.3 59.3 + - - +
619B LEU* 3.1 11.1 + - + +
620B HIS* 2.9 28.3 + - + +
664B LEU* 6.3 0.2 - - + -
668B TYR* 4.1 18.6 - - + -
672B LYS* 3.6 33.7 - - + +
675B LEU* 3.7 28.9 - - + -
676B ALA* 4.1 10.3 - - + +
679B LEU* 4.5 14.1 - - + -
680B LEU* 6.3 2.0 - - + -
705B LEU* 5.8 0.7 - - - -
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Residues in contact with GLU 617 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7B ILE* 3.4 23.7 - - + +
8B ASP 3.7 19.3 + - - +
13B GLN* 3.3 9.9 - - - +
387B VAL* 4.5 9.0 - - - +
613B ILE* 2.8 48.1 + - + +
616B LEU* 1.3 72.6 - - - +
618B SER* 1.3 58.1 + - - +
620B HIS* 3.1 8.2 + - - +
621B GLN* 3.0 26.3 + - - +
668B TYR* 2.5 37.5 + - - -
672B LYS* 3.9 3.1 - - - +
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Residues in contact with SER 618 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7B ILE* 4.0 18.3 - - - +
483B LEU* 5.5 0.2 - - - +
485B LYS* 4.0 22.6 - - - +
491B GLU* 5.0 1.9 - - - +
614B ILE* 2.5 30.9 + - - +
615B SER 3.5 3.8 - - - -
617B GLU* 1.3 73.1 - - - +
619B LEU* 1.3 66.1 + - - +
621B GLN* 3.2 5.5 + - - +
622B LEU* 3.2 22.7 + - - +
698B LEU* 5.1 1.6 - - - +
702B ILE* 3.6 25.3 - - - +
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Residues in contact with LEU 619 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
615B SER 2.8 21.3 + - - +
616B LEU* 3.1 11.4 + - + +
618B SER* 1.3 73.1 - - - +
620B HIS* 1.3 57.1 + - - +
622B LEU* 3.6 2.5 + - + +
623B LEU* 3.1 37.7 + - + +
664B LEU* 4.0 19.5 - - + -
679B LEU* 3.5 32.3 - - + -
702B ILE* 3.9 16.3 - - + +
705B LEU* 4.2 19.5 - - + +
706B ASN* 4.0 32.3 - - + +
709B VAL* 4.3 4.7 - - + -
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Residues in contact with HIS 620 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386B LEU* 5.9 1.9 - - + +
387B VAL* 3.9 22.6 - - + +
390B GLN* 4.9 6.1 - - - -
616B LEU* 2.9 13.7 + - + +
617B GLU* 3.4 10.1 + - - +
619B LEU* 1.3 76.7 - - - +
621B GLN* 1.3 65.9 + - - +
623B LEU* 4.9 0.4 - - - -
624B SER* 2.7 43.1 + - - -
664B LEU* 5.5 3.8 - - + -
665B LEU* 3.4 24.3 - - + +
668B TYR* 3.1 57.2 + + + -
669B ARG* 2.6 31.9 + - - -
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Residues in contact with GLN 621 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5B SER* 3.1 27.8 + - - -
6B ARG 4.3 3.3 - - - +
7B ILE* 3.9 14.7 - - + +
386B LEU* 3.9 22.1 - - + +
485B LYS* 3.6 9.7 - - - +
491B GLU* 2.8 26.4 + - - +
495B TYR* 2.6 27.3 + - - -
617B GLU 3.0 12.4 + - - +
618B SER* 3.2 8.0 + - - +
620B HIS* 1.3 80.3 + - - +
622B LEU* 1.3 58.7 + - - +
624B SER* 3.1 4.2 + - - -
625B ILE* 2.8 42.7 + - + +
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Residues in contact with LEU 622 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488B THR* 4.3 11.4 - - + +
490B VAL* 5.2 5.8 - - + -
491B GLU* 4.0 31.6 - - + +
618B SER 3.2 13.3 + - - +
619B LEU* 3.9 5.2 - - + +
621B GLN* 1.3 80.1 - - - +
623B LEU* 1.3 59.2 + - + +
625B ILE* 3.4 5.4 + - + +
626B HIS* 2.8 50.0 + - + +
702B ILE* 4.3 19.5 - - + -
703B ASP* 4.4 15.3 - - - +
706B ASN* 3.6 28.7 - - + +
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Residues in contact with LEU 623 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
619B LEU* 3.1 31.9 + - + +
620B HIS 4.3 2.2 - - - +
622B LEU* 1.3 75.8 - - + +
624B SER* 1.3 56.8 + - - +
626B HIS* 3.5 8.0 - - + +
627B TYR* 2.7 34.1 + - - +
661B GLN* 4.2 10.5 - - + +
664B LEU* 2.9 40.4 - - + -
665B LEU* 4.3 10.9 - - + +
706B ASN* 3.8 17.3 - - - +
709B VAL* 3.9 19.5 - - + -
710B TYR* 3.3 29.6 - - + +
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Residues in contact with SER 624 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386B LEU* 4.0 15.9 - - - -
390B GLN* 4.5 17.3 + - - -
494B PHE* 5.9 0.2 - - - -
620B HIS* 2.7 36.5 + - - -
621B GLN 3.1 4.7 + - - -
623B LEU* 1.3 72.3 - - - +
625B ILE* 1.3 68.3 + - - +
627B TYR* 3.1 6.0 + - - +
628B ARG* 3.1 22.0 + - - +
665B LEU* 3.3 25.9 - - - +
669B ARG* 4.5 1.6 + - - -
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Residues in contact with ILE 625 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386B LEU* 4.0 8.7 - - + -
490B VAL* 4.3 14.1 - - + +
491B GLU* 4.1 21.3 - - + -
494B PHE* 3.5 59.3 - - + -
495B TYR* 4.2 6.1 - - + -
621B GLN* 2.8 39.8 + - + +
622B LEU* 3.6 5.4 - - + +
624B SER* 1.3 75.9 - - - +
626B HIS* 1.3 64.2 + - + +
628B ARG* 3.1 12.9 + - - +
629B ILE* 3.1 28.1 + - + +
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Residues in contact with HIS 626 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490B VAL* 4.7 17.9 - - + +
590B GLN 4.6 3.6 + - - -
591B MET* 3.4 48.3 - - + +
622B LEU* 2.8 47.8 + - + +
623B LEU* 3.5 9.8 - - + +
625B ILE* 1.3 74.0 - - + +
627B TYR* 1.3 54.1 + - - +
629B ILE* 3.3 4.1 + - - +
630B THR* 2.7 39.1 + - - -
661B GLN* 3.7 1.8 - - - +
703B ASP* 6.0 0.2 - - - -
706B ASN* 3.2 25.6 + - - -
710B TYR* 2.6 29.1 + - - +
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Residues in contact with TYR 627 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397B ILE* 3.9 25.6 - - + +
398B VAL* 3.7 17.7 - - + -
529B SER* 2.5 28.1 + - - -
623B LEU 2.7 21.3 + - - +
624B SER* 3.1 6.9 + - - +
626B HIS* 1.3 75.3 - - - +
628B ARG* 1.3 64.9 + - + +
630B THR* 3.9 0.2 - - - -
631B LEU* 3.1 28.4 + - + +
658B HIS* 3.5 26.9 - + - -
661B GLN* 3.2 29.4 - - + +
662B PHE* 3.7 24.6 - + + -
665B LEU* 3.9 20.0 - - + -
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Residues in contact with ARG 628 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390B GLN* 6.4 0.4 - - - +
395B LEU* 4.5 27.5 - - - +
397B ILE* 6.5 0.7 - - + -
494B PHE* 3.6 40.0 + - + -
497B MET* 4.6 12.6 - - - +
514B ASN* 3.4 29.6 + - - +
518B SER* 6.0 0.8 - - - -
624B SER 3.1 11.3 + - - +
625B ILE 3.7 7.0 - - - +
627B TYR* 1.3 78.0 - - + +
629B ILE* 1.3 69.8 + - + +
631B LEU* 3.3 7.1 + - + +
632B GLN* 2.9 48.9 + - + +
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Residues in contact with ILE 629 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490B VAL* 3.5 34.5 - - + +
494B PHE* 5.8 4.5 - - + +
497B MET* 6.0 4.7 - - + -
510B LEU* 3.9 39.7 - - + -
586B LEU* 3.9 24.2 - - + -
591B MET* 4.4 7.4 - - + -
625B ILE* 3.1 21.7 + - + +
626B HIS* 3.6 9.9 - - + +
628B ARG* 1.3 81.9 - - + +
630B THR* 1.3 65.8 + - - +
632B GLN* 3.1 12.8 + - - +
633B VAL* 2.9 26.5 + - + +
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Residues in contact with THR 630 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591B MET* 2.8 14.3 - - - +
626B HIS 2.7 27.6 + - - -
627B TYR 3.9 0.2 - - - -
629B ILE* 1.3 74.9 - - - +
631B LEU* 1.3 63.3 + - - +
633B VAL* 3.3 6.7 + - - +
634B LEU* 2.9 27.6 + - + +
654B LEU* 3.7 38.1 - - + +
657B LEU* 4.8 1.3 - - + -
658B HIS* 3.7 11.9 - - + +
661B GLN* 2.8 31.1 + - - +
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Residues in contact with LEU 631 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397B ILE* 4.1 26.5 - - + -
525B LEU* 4.2 24.7 - - + +
528B ILE* 4.3 4.5 - - + -
529B SER* 3.8 14.8 - - - +
532B PHE* 3.7 31.2 - - + -
627B TYR* 3.1 26.5 + - + +
628B ARG* 3.7 7.0 - - + +
630B THR* 1.3 79.1 - - - +
632B GLN* 1.3 60.6 + - + +
634B LEU* 3.2 8.5 + - - +
635B LEU* 2.8 30.8 + - + +
658B HIS* 3.7 19.5 - - + +
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Residues in contact with GLN 632 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497B MET* 4.9 3.8 - - - +
510B LEU* 4.1 5.9 + - - +
513B LEU* 3.9 15.8 - - + +
514B ASN* 2.9 55.6 + - - +
517B ALA* 3.5 22.5 - - + +
525B LEU* 6.3 0.7 - - + -
628B ARG* 2.9 36.6 + - + +
629B ILE* 3.4 15.5 - - - +
631B LEU* 1.3 79.0 - - + +
633B VAL* 1.3 61.5 + - - +
635B LEU* 3.1 24.2 + - - +
636B THR* 3.3 12.8 + - - +
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Residues in contact with VAL 633 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509B TYR* 3.9 8.5 - - + +
510B LEU* 4.9 0.7 - - + -
513B LEU* 3.5 22.7 - - + -
583B LEU* 3.6 24.7 - - + -
586B LEU* 4.0 25.1 - - + -
629B ILE* 2.9 22.5 + - + +
630B THR* 3.7 7.9 - - - +
632B GLN* 1.3 71.2 - - - +
634B LEU* 1.3 67.8 + - - +
636B THR* 2.7 24.1 + - - +
637B PHE* 3.3 21.3 - - + -
654B LEU* 3.8 15.9 - - + -
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Residues in contact with LEU 634 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
532B PHE* 3.5 28.3 - - + -
550B PHE* 5.0 3.8 - - + -
630B THR* 2.9 24.9 + - + +
631B LEU 3.5 4.3 - - - +
633B VAL* 1.3 76.6 - - - +
635B LEU* 1.3 62.6 + - - +
637B PHE* 3.0 19.9 + - + +
638B VAL* 3.3 15.6 + - - +
651B ILE* 4.1 10.8 - - + +
654B LEU* 3.5 31.0 - - + +
655B LEU* 3.7 37.0 - - + -
658B HIS* 3.9 24.2 - - + -
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Residues in contact with LEU 635 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516B PHE* 4.1 12.1 - - + -
517B ALA* 4.1 21.8 - - + -
520B LEU* 3.8 23.3 - - + -
525B LEU* 4.9 6.3 - - + -
528B ILE* 4.1 13.5 - - + -
532B PHE* 4.3 8.2 - - + -
558B LEU* 3.4 37.7 - - + -
631B LEU* 2.8 15.0 + - + +
632B GLN* 3.1 13.7 - - - +
634B LEU* 1.3 77.3 - - - +
636B THR* 1.3 66.3 + - + +
638B VAL* 3.1 14.1 + - + +
639B LEU* 3.3 20.2 + - + +
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Residues in contact with THR 636 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509B TYR* 4.2 8.0 + - - -
513B LEU* 3.6 30.7 - - + +
516B PHE* 6.2 0.2 - - + -
570B LEU* 4.7 13.7 - - + -
574B LEU* 4.6 10.8 - - + -
632B GLN 3.6 13.2 - - - +
633B VAL* 2.7 17.8 + - - -
635B LEU* 1.3 78.9 - - + +
637B PHE* 1.3 62.9 + - - +
639B LEU* 4.5 3.8 - - - -
640B PHE* 3.0 45.5 + - - +
642B LEU* 4.6 8.7 - - - +
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Residues in contact with PHE 637 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509B TYR* 5.4 0.7 - - - -
550B PHE* 3.0 21.3 - - + -
583B LEU* 3.4 27.4 - - + -
633B VAL* 3.3 43.7 + - + -
634B LEU* 3.0 14.3 + - + +
636B THR* 1.3 84.7 + - - +
638B VAL* 1.3 54.8 + - - +
639B LEU 3.3 0.2 - - - -
640B PHE 4.1 0.7 - - - -
642B LEU* 3.2 36.1 - - + -
647B PHE* 3.6 30.7 - + + -
650B HIS* 5.0 2.0 - - + -
651B ILE* 3.9 21.8 - - + -
654B LEU* 4.0 12.3 - - + -
210C ARG* 2.5 34.4 + - - +
----------------------------------------------------------
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Residues in contact with VAL 638 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
528B ILE* 6.2 0.2 - - + -
532B PHE* 3.8 27.1 - - + -
550B PHE* 3.5 39.3 - - + +
553B ILE* 4.4 13.0 - - + -
554B PHE* 4.9 2.2 - - + +
558B LEU* 3.7 26.9 - - + -
634B LEU 3.3 15.9 - - - +
635B LEU* 3.1 11.3 + - + +
637B PHE* 1.3 77.4 - - - +
639B LEU* 1.3 61.7 + - - +
210C ARG* 3.4 2.8 - - - -
211C PHE* 2.8 32.9 - - - -
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Residues in contact with LEU 639 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516B PHE* 3.5 35.4 - - + -
554B PHE* 3.8 31.0 - - + -
558B LEU* 4.1 11.0 - - + -
562B PHE* 4.2 17.0 - - + -
567B LEU* 3.9 16.2 - - + -
570B LEU* 4.7 6.1 - - + -
635B LEU* 3.3 21.8 + - + +
636B THR* 3.3 5.1 + - - +
638B VAL* 1.3 79.9 - - - +
640B PHE* 1.3 69.5 + - + +
209C THR* 3.1 18.2 - - + +
210C ARG 3.0 21.7 + - - -
211C PHE* 4.4 0.9 - - - -
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Residues in contact with PHE 640 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
567B LEU* 3.4 35.2 - - + -
570B LEU* 3.7 24.2 - - + -
571B PHE* 3.9 35.7 - + + -
574B LEU* 3.6 31.6 - - + -
636B THR* 3.0 26.9 + - - +
637B PHE 3.5 2.6 - - - +
639B LEU* 1.3 85.1 - - + +
641B ASP* 1.3 61.7 + - - +
642B LEU* 3.0 16.5 + - + +
208C LEU 3.2 23.1 - - - -
210C ARG* 2.9 28.6 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il