Contacts of the helix formed by residues 204 - 244 (chain G) in PDB entry 3FKS
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 204 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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202G ASP 3.0 12.5 + - - +
203G ALA* 1.3 91.2 - - - +
205G VAL* 1.3 63.4 + - - +
206G PRO* 3.5 6.5 - - - -
207G ARG* 3.1 39.7 + - + +
208G ASP* 2.8 33.3 + - - +
35H LYS* 4.2 7.4 + - - +
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Residues in contact with VAL 205 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194G PHE* 5.9 0.2 - - + -
199G ILE* 3.7 24.9 - - + -
200G ASP* 3.7 25.0 + - - +
203G ALA* 2.8 7.8 + - + +
204G ASN* 1.3 70.1 - - - +
206G PRO* 1.3 71.9 - - + +
208G ASP* 3.2 3.4 + - - +
209G LEU* 2.8 37.0 + - + +
49H VAL* 3.9 21.8 - - + +
50H GLU* 5.4 2.9 - - + -
51H GLN* 3.7 23.3 - - + +
74H PHE* 4.3 16.4 - - + -
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Residues in contact with PRO 206 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185G ALA* 4.0 21.3 - - + +
188G ILE* 3.5 22.8 - - + +
189G GLU* 4.0 29.8 - - + +
194G PHE* 4.1 16.2 - - + -
199G ILE* 5.0 3.6 - - + -
200G ASP 6.1 0.2 - - - +
204G ASN* 3.6 4.7 - - - -
205G VAL* 1.3 97.8 - - + +
207G ARG* 1.3 60.6 + - - +
209G LEU* 3.4 6.4 + - + -
210G PHE* 3.3 18.7 + - - +
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Residues in contact with ARG 207 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185G ALA* 4.0 19.5 - - + +
204G ASN* 3.1 43.6 + - + +
205G VAL 3.1 0.6 - - - -
206G PRO* 1.3 81.1 - - - +
208G ASP* 1.3 79.3 + - - +
209G LEU 3.4 0.2 + - - -
210G PHE* 3.5 4.9 + - + +
211G GLU* 3.4 53.0 + - + +
8I ILE 5.9 0.6 + - - -
9I SER* 6.2 0.2 - - - +
10I TYR* 5.2 2.4 - - - +
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Residues in contact with ASP 208 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204G ASN* 2.8 29.8 + - - +
205G VAL 3.8 2.9 - - - +
207G ARG* 1.3 106.8 + - - +
209G LEU* 1.3 63.0 + - - +
210G PHE 3.3 0.2 - - - -
211G GLU 4.1 0.6 - - - +
212G TYR* 3.2 24.9 + - - +
35H LYS* 4.8 2.6 + - - -
51H GLN* 2.7 31.0 - - - +
74H PHE* 3.8 5.2 - - + -
10I TYR* 3.7 31.4 - - + +
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Residues in contact with LEU 209 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48G GLU* 4.7 4.0 - - - +
51G PHE* 3.6 32.5 - - + -
52G TYR* 3.0 38.1 - - + +
188G ILE* 4.3 9.6 - - + -
194G PHE* 5.8 1.6 - - + -
199G ILE* 6.1 0.2 - - + -
205G VAL* 2.8 22.5 + - + +
206G PRO* 3.6 7.9 - - + +
207G ARG 3.2 0.2 - - - -
208G ASP* 1.3 79.1 - - - +
210G PHE* 1.3 56.6 + - - +
212G TYR* 4.0 0.9 - - - +
213G THR* 2.7 44.0 + - - +
49H VAL* 4.1 20.6 - - + -
74H PHE* 3.8 22.4 - - + -
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Residues in contact with PHE 210 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151G LEU* 5.0 6.1 - - + -
156G ALA* 4.5 19.3 - - + -
157G GLY* 4.4 20.4 - - - -
162G ILE* 4.7 4.9 - - + -
182G ILE* 3.5 26.5 - - + -
183G PHE 3.0 26.5 - - - +
184G ASN* 3.6 12.6 - - + -
185G ALA* 3.9 15.3 - - + +
188G ILE* 3.8 13.4 - - + +
206G PRO 3.3 8.2 + - - +
207G ARG* 3.9 4.5 - - + +
208G ASP 3.3 0.2 - - - -
209G LEU* 1.3 75.9 - - - +
211G GLU* 1.3 73.4 + - + +
212G TYR 3.0 4.7 - - - -
213G THR* 3.7 3.9 - - - -
214G LEU* 2.9 50.2 + - + +
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Residues in contact with GLU 211 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147G ALA* 5.3 1.6 - - - +
151G LEU* 3.3 40.1 - - + +
207G ARG* 3.4 50.6 + - + +
208G ASP 3.7 0.4 + - - +
210G PHE* 1.3 86.8 - - + +
212G TYR* 1.3 58.9 + - - +
214G LEU* 4.0 12.6 - - - +
215G ALA* 4.1 2.8 + - - +
8I ILE 5.3 0.4 - - - +
9I SER* 4.2 6.6 + - - +
10I TYR* 3.3 34.9 + - + +
11I ALA* 3.9 18.7 - - - +
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Residues in contact with TYR 212 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44G MET* 3.6 5.5 - - - +
48G GLU* 3.7 28.0 - - - -
140G PHE* 4.5 14.0 - + - -
208G ASP 3.2 18.6 + - - +
209G LEU* 4.0 2.9 - - + +
210G PHE 3.0 0.6 - - - -
211G GLU* 1.3 78.9 - - - +
213G THR* 1.3 59.7 + - - +
214G LEU 3.1 4.9 - - - -
215G ALA* 3.5 4.1 + - - +
216G ASN* 2.9 44.4 + - - +
72H GLY 4.4 1.1 - - - -
73H GLY* 3.7 14.9 - - - -
74H PHE* 3.6 22.9 - + + -
86H THR* 2.9 30.2 + - - -
87H ALA* 4.0 1.9 + - - -
88H ILE* 5.2 1.3 - - + -
10I TYR* 3.7 13.0 - + + -
11I ALA* 5.3 2.0 - - - -
14I LEU* 3.4 32.5 - - + -
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Residues in contact with THR 213 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48G GLU* 3.1 28.0 + - + +
52G TYR* 3.2 34.8 + - + +
182G ILE* 4.2 9.3 - - + +
183G PHE 6.3 0.4 - - - +
209G LEU* 2.7 26.6 + - - +
210G PHE* 3.7 3.6 - - - -
212G TYR* 1.3 74.0 - - - +
214G LEU* 1.3 62.7 + - - +
215G ALA 3.4 0.2 - - - -
216G ASN* 4.1 4.7 - - - -
217G GLN* 3.2 41.0 + - + +
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Residues in contact with LEU 214 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147G ALA* 3.7 31.0 - - + +
150G LEU* 3.8 26.2 - - + -
151G LEU* 4.7 13.7 - - + -
156G ALA* 4.8 4.0 - - + -
162G ILE* 4.8 7.4 - - + -
164G ILE* 4.9 2.1 - - + +
182G ILE* 4.2 26.7 - - + -
210G PHE* 2.9 39.9 + - + +
211G GLU* 4.1 7.4 - - - +
212G TYR 3.1 0.6 - - - -
213G THR* 1.3 80.1 - - - +
215G ALA* 1.3 59.4 + - - +
217G GLN* 4.6 0.9 - - - +
218G MET* 3.2 33.3 + - + +
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Residues in contact with ALA 215 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140G PHE* 4.2 10.3 - - + -
143G SER* 3.3 10.7 + - - -
144G ALA* 3.6 32.8 - - + +
147G ALA* 4.1 8.3 - - + -
211G GLU 4.1 1.3 + - - +
212G TYR 3.5 7.6 + - - +
213G THR 3.4 0.2 - - - -
214G LEU* 1.3 79.2 - - - +
216G ASN* 1.3 64.8 + - - +
218G MET* 3.3 7.3 + - - +
219G LEU* 3.1 17.5 + - - +
11I ALA* 4.1 16.8 - - + -
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Residues in contact with ASN 216 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44G MET* 3.4 31.6 - - + +
48G GLU* 5.0 7.0 - - + -
140G PHE* 3.2 25.9 - - - -
212G TYR* 2.9 49.1 + - - +
213G THR* 4.6 5.6 - - - +
214G LEU 3.6 0.2 - - - -
215G ALA* 1.3 79.6 - - - +
217G GLN* 1.3 58.1 + - - +
219G LEU* 3.0 11.8 + - - +
220G THR* 2.8 39.2 + - - +
17H PRO* 5.2 0.4 - - - +
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Residues in contact with GLN 217 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45G ASP* 2.9 23.9 + - - +
48G GLU* 3.9 26.5 - - - +
49G GLN* 5.5 2.7 - - - +
164G ILE* 4.0 3.3 - - + +
180G LYS* 2.8 40.2 + - + +
181G PRO 5.4 2.0 - - - +
182G ILE* 3.9 24.7 - - + -
213G THR* 3.2 34.2 + - + +
214G LEU 4.8 0.4 - - - +
216G ASN* 1.3 79.8 - - - +
218G MET* 1.3 56.4 + - - +
220G THR* 3.9 4.6 + - - -
221G ALA* 3.1 26.5 + - - +
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Residues in contact with MET 218 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75G VAL* 3.8 28.3 - - + -
77G ILE* 5.3 4.0 - - + +
110G ILE* 4.7 5.6 - - - -
143G SER* 4.1 10.3 - - - +
146G ILE* 4.1 28.9 - - + -
147G ALA* 4.4 7.9 - - - -
150G LEU* 3.5 37.5 - - + -
164G ILE* 3.7 15.9 - - + -
214G LEU* 3.2 20.7 + - + +
215G ALA 3.3 10.5 + - - +
216G ASN 3.0 0.4 - - - -
217G GLN* 1.3 77.0 - - - +
219G LEU* 1.3 53.7 + - - +
221G ALA* 3.0 5.4 + - - +
222G MET* 2.6 45.3 + - + +
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Residues in contact with LEU 219 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41G ALA* 4.6 10.3 - - + -
44G MET* 5.5 1.6 - - - -
138G PRO* 4.8 9.2 - - + +
139G THR* 3.5 10.3 - - - +
140G PHE* 3.3 38.4 - - + +
143G SER* 3.7 16.7 - - - +
215G ALA 3.1 3.8 + - - +
216G ASN* 3.0 15.3 + - - +
218G MET* 1.3 78.5 - - - +
220G THR* 1.3 63.4 + - - +
222G MET* 3.5 8.5 - - - +
223G ALA* 2.6 39.9 + - + +
17H PRO* 3.8 36.6 - - + +
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Residues in contact with THR 220 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41G ALA* 4.0 26.5 + - + +
44G MET* 5.6 4.9 - - - -
45G ASP* 3.5 31.8 + - + +
180G LYS* 3.4 21.1 - - - +
216G ASN* 2.8 24.3 + - - +
217G GLN* 3.9 2.8 + - - -
219G LEU* 1.3 76.6 - - - +
221G ALA* 1.3 62.4 + - - +
223G ALA* 3.9 0.7 - - - +
224G GLN* 3.2 42.3 + - - +
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Residues in contact with ALA 221 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77G ILE* 4.3 5.3 - - + +
164G ILE* 3.7 26.5 - - + -
166G TYR* 3.5 35.4 - - + +
180G LYS* 4.0 4.0 - - - +
217G GLN 3.1 20.1 + - - +
218G MET* 3.0 5.7 + - - +
220G THR* 1.3 75.2 - - - +
222G MET* 1.3 59.4 + - - +
224G GLN 3.7 0.3 + - - -
225G GLY* 2.9 24.9 + - - -
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Residues in contact with MET 222 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77G ILE* 3.8 23.1 - - + -
110G ILE* 3.4 42.0 - - + -
133G ILE* 5.3 4.3 - - + -
138G PRO* 3.7 24.9 - - + -
139G THR 5.4 0.4 - - - +
142G GLU* 4.8 8.1 - - + +
143G SER* 4.3 22.0 - - - +
146G ILE* 4.5 16.2 - - + -
218G MET* 2.6 26.9 + - + +
219G LEU* 3.6 4.7 - - - +
221G ALA* 1.3 72.9 - - - +
223G ALA* 1.3 58.0 + - - +
226G TYR* 2.7 50.7 + - + +
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Residues in contact with ALA 223 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37G ALA* 3.7 32.2 - - + +
38G LYS* 5.0 2.3 + - - -
41G ALA* 3.7 15.3 - - + -
138G PRO* 3.6 17.5 - - + +
219G LEU* 2.6 24.6 + - + +
220G THR 3.9 1.3 - - - +
222G MET* 1.3 73.6 - - - +
224G GLN* 1.3 57.4 + - + +
226G TYR* 4.0 1.0 - - - +
227G ALA* 3.0 29.2 + - - +
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Residues in contact with GLN 224 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38G LYS* 4.6 15.5 - - + +
41G ALA* 5.1 1.1 - - + -
42G LYS* 3.3 34.7 + - + +
45G ASP* 4.6 3.3 - - - +
166G TYR* 4.1 13.5 + - + -
167G ASN 3.0 17.6 - - - +
168G ASP* 3.2 33.7 + - - -
169G PRO* 3.4 10.2 - - + +
180G LYS* 4.9 0.7 + - - -
220G THR* 3.2 37.3 + - + +
221G ALA 4.2 1.8 - - - +
222G MET 3.3 0.2 - - - -
223G ALA* 1.3 77.8 - - + +
225G GLY* 1.3 58.2 + - - +
227G ALA* 3.7 5.8 - - - -
228G ALA* 3.0 25.1 + - - +
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Residues in contact with GLY 225 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77G ILE* 5.3 4.9 - - - -
87G ILE* 4.0 0.5 - - - +
166G TYR* 5.0 0.7 - - - -
167G ASN* 3.5 32.7 + - - -
221G ALA 2.9 18.8 + - - -
222G MET* 2.9 4.9 + - - -
224G GLN* 1.3 79.0 - - - +
226G TYR* 1.3 62.8 + - - +
227G ALA 3.2 0.2 - - - -
228G ALA* 3.7 0.5 + - - +
229G GLU* 3.4 23.6 + - - +
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Residues in contact with TYR 226 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34G ALA* 4.9 1.0 - - - +
77G ILE* 4.6 6.2 - - + +
78G THR* 3.0 44.1 + - - -
79G SER* 3.9 7.0 - - - -
110G ILE* 3.8 9.4 - - - +
133G ILE* 3.3 32.0 - - + +
134G GLY* 4.1 7.6 + - - -
136G ASP 4.2 13.7 - - - +
137G ALA* 5.4 0.7 - - - -
138G PRO* 3.5 35.4 - - + -
142G GLU* 5.2 0.2 - - - -
222G MET* 2.7 37.0 + - + +
223G ALA 4.0 0.9 - - - +
225G GLY* 1.3 74.1 - - - -
227G ALA* 1.3 59.1 + - - +
229G GLU* 3.7 20.0 - - - +
230G ILE* 3.4 30.4 + - + +
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Residues in contact with ALA 227 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31G LEU* 4.8 0.2 - - - +
34G ALA* 3.6 41.4 - - + +
35G GLU* 5.3 3.1 - - - +
38G LYS* 4.4 6.7 - - + -
169G PRO* 4.3 6.3 - - + -
223G ALA 3.0 20.1 + - - +
224G GLN* 3.8 8.1 - - - +
226G TYR* 1.3 77.3 - - - +
228G ALA* 1.3 64.1 + - - +
229G GLU 3.0 1.1 - - - -
230G ILE* 3.5 2.1 + - - +
231G SER* 3.1 25.2 + - - -
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Residues in contact with ALA 228 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87G ILE* 4.0 3.1 - - + +
167G ASN* 4.0 20.6 - - + -
169G PRO* 3.4 29.5 - - + +
175G PHE* 4.1 16.4 - - + +
224G GLN 3.0 18.4 + - - +
225G GLY 4.1 0.7 - - - +
227G ALA* 1.3 76.5 - - - +
229G GLU* 1.3 56.7 + - - +
231G SER* 3.8 5.9 + - - -
232G ALA* 3.1 26.3 + - - +
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Residues in contact with GLU 229 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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78G THR* 5.1 2.1 - - - +
79G SER* 2.7 40.4 + - - -
81G LYS* 4.0 1.6 - - - +
84G CYS* 3.9 18.7 - - + +
87G ILE* 3.5 16.6 - - + +
88G HIS* 4.6 4.2 - - - -
134G GLY 5.0 1.6 - - - +
225G GLY 3.4 14.9 + - - +
226G TYR* 3.7 21.7 - - - +
227G ALA 3.0 0.6 - - - -
228G ALA* 1.3 76.5 - - - +
230G ILE* 1.3 57.4 + - + +
231G SER 3.1 1.1 - - - -
232G ALA* 2.7 5.7 + - - +
233G ARG* 2.7 62.5 + - - +
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Residues in contact with ILE 230 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27G ALA* 3.1 26.9 - - - +
30G ARG* 3.9 34.1 - - + +
31G LEU* 3.8 26.4 - - + +
34G ALA* 4.2 5.2 - - + -
135G LYS 5.8 2.5 - - - +
136G ASP 6.0 2.2 - - - +
226G TYR* 3.4 21.7 + - + +
227G ALA 3.5 3.2 + - - +
229G GLU* 1.3 83.1 - - + +
231G SER* 1.3 62.6 + - - +
233G ARG* 3.4 28.1 - - - +
234G ARG* 3.3 23.6 + - - +
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Residues in contact with SER 231 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31G LEU* 3.8 22.9 - - - +
35G GLU* 4.9 4.4 + - - -
169G PRO* 5.8 3.6 - - - -
171G SER 4.6 2.4 + - - -
172G SER* 3.1 35.9 + - - +
173G LEU* 5.1 2.3 - - - +
174G SER 5.6 0.2 + - - -
227G ALA 3.1 18.4 + - - -
228G ALA* 3.9 8.7 - - - -
230G ILE* 1.3 77.5 - - - +
232G ALA* 1.3 59.7 + - - +
234G ARG* 4.4 5.9 - - - +
235G ASN* 3.9 15.8 + - - +
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Residues in contact with ALA 232 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84G CYS 3.2 24.2 - - - +
85G GLY* 5.1 0.2 - - - -
87G ILE* 5.0 7.9 - - + -
175G PHE* 5.3 11.0 - - + -
228G ALA 3.1 17.0 + - - +
229G GLU* 2.7 8.3 + - - +
231G SER* 1.3 78.9 - - - +
233G ARG* 1.3 57.4 + - - +
234G ARG 3.4 0.4 - - - -
235G ASN* 3.7 11.9 + - - +
236G ALA* 2.9 22.3 + - - +
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Residues in contact with ARG 233 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23G MET* 4.9 7.0 - - - -
26G VAL* 6.5 0.7 - - - -
27G ALA* 3.8 17.5 - - + +
30G ARG* 5.9 2.0 - - - +
81G LYS* 3.6 34.6 - - - +
82G GLY 3.3 19.2 + - - -
83G LEU* 3.2 20.5 + - - +
84G CYS* 4.0 13.2 + - - +
229G GLU* 2.7 46.5 + - - +
230G ILE* 3.4 36.6 + - - +
232G ALA* 1.3 72.5 - - - +
234G ARG* 1.3 64.9 + - - +
236G ALA* 3.2 1.9 + - - +
237G MET* 2.9 38.3 + - - +
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Residues in contact with ARG 234 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386E ASP* 5.6 5.1 + - - +
387E ILE* 5.0 15.0 - - - +
24G LYS* 3.7 42.0 - - + +
27G ALA* 3.7 14.6 - - + +
28G SER* 3.8 32.0 + - - +
31G LEU* 6.3 3.6 - - + -
173G LEU* 4.9 15.2 - - - +
230G ILE 3.3 13.1 + - - +
231G SER* 4.4 6.5 - - - +
232G ALA 3.4 0.2 - - - -
233G ARG* 1.3 78.8 - - - +
235G ASN* 1.3 61.2 + - - +
237G MET 3.7 0.9 - - - -
238G ASP* 2.9 46.4 + - - +
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Residues in contact with ASN 235 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407B GLN 5.6 1.6 - - - +
173G LEU* 4.6 28.3 + - + +
231G SER 3.9 12.0 + - - +
232G ALA* 3.6 13.6 + - - +
234G ARG* 1.3 87.2 - - - +
236G ALA* 1.3 62.9 + - - +
237G MET 3.3 0.9 + - - -
238G ASP* 3.4 11.8 + - - +
239G ASN* 3.4 15.6 + - - +
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Residues in contact with ALA 236 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390F ILE 5.5 0.2 - - - +
391F LEU 5.1 6.2 - - - +
83G LEU* 4.6 3.8 - - + -
84G CYS* 3.9 23.8 - - - +
85G GLY* 4.1 6.3 - - - +
232G ALA 2.9 19.7 + - - +
233G ARG* 3.2 6.3 + - - +
235G ASN* 1.3 79.1 - - - +
237G MET* 1.3 60.9 + - + +
238G ASP 3.5 0.2 - - - -
239G ASN* 4.1 5.5 + - - +
240G ALA* 3.6 17.7 + - - +
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Residues in contact with MET 237 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390D ILE* 5.8 1.1 - - + -
391F LEU* 6.6 0.2 - - + -
20G THR* 3.5 31.5 - - + +
23G MET* 3.3 45.5 - - + +
24G LYS* 4.1 11.5 - - + +
83G LEU* 3.5 52.9 - - + +
233G ARG* 2.9 25.4 + - + +
234G ARG 3.7 0.7 - - - -
236G ALA* 1.3 79.9 - - + +
238G ASP* 1.3 60.6 + - - +
239G ASN 3.3 0.7 - - - -
240G ALA* 3.5 13.3 - - + +
241G SER* 3.1 25.5 + - - -
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Residues in contact with ASP 238 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24G LYS* 3.1 30.9 - - - +
234G ARG* 2.9 33.9 + - - +
235G ASN* 3.4 7.2 + - - +
237G MET* 1.3 77.3 - - - +
239G ASN* 1.3 62.4 - - - +
240G ALA 3.1 0.2 - - - -
241G SER* 3.3 16.3 + - - -
242G LYS* 3.4 12.0 + - - +
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Residues in contact with ASN 239 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407B GLN* 4.2 27.9 + - - +
390F ILE 4.8 0.2 - - - -
235G ASN* 3.4 15.0 + - - +
236G ALA* 4.2 6.1 - - - +
237G MET 3.3 0.2 - - - -
238G ASP* 1.3 78.8 - - - +
240G ALA* 1.3 58.2 + - - +
242G LYS* 4.0 9.1 - - - +
243G ASN* 2.9 54.3 + - - +
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Residues in contact with ALA 240 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390F ILE* 3.7 25.0 - - + +
391F LEU* 5.3 5.8 - - + -
20G THR* 3.9 21.3 - - + -
236G ALA 3.6 7.3 + - - +
237G MET* 3.5 24.1 - - + +
238G ASP 3.1 0.8 - - - -
239G ASN* 1.3 76.6 - - - +
241G SER* 1.3 56.3 + - - +
242G LYS 3.2 0.9 - - - -
243G ASN* 3.1 2.6 + - - +
244G ALA* 2.7 35.0 + - - +
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Residues in contact with SER 241 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17G GLU* 4.3 10.9 - - - +
20G THR* 3.5 15.1 + - - -
21G LYS* 4.0 29.1 - - - +
24G LYS* 4.7 2.3 - - - +
237G MET 3.1 11.7 + - - -
238G ASP* 3.3 17.3 + - - -
240G ALA* 1.3 79.1 - - - +
242G LYS* 1.3 64.1 + - - +
244G ALA* 3.3 7.0 + - - +
245G GLY* 3.1 17.2 + - - -
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Residues in contact with LYS 242 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238G ASP 3.4 16.0 + - - +
239G ASN* 4.0 10.8 - - - +
240G ALA 3.2 0.4 - - - -
241G SER* 1.3 82.7 + - - +
243G ASN* 1.3 68.4 + - - +
245G GLY* 3.1 15.3 + - - -
246G ASP* 3.5 34.3 + - - +
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Residues in contact with ASN 243 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388F ILE 5.2 1.2 + - - -
389F ALA 3.2 28.1 + - - +
390F ILE* 3.5 21.1 + - - +
391F LEU 5.6 0.6 + - - -
239G ASN* 2.9 45.9 + - - +
240G ALA 3.5 4.7 - - - +
242G LYS* 1.3 84.9 + - - +
244G ALA* 1.3 59.3 + - - +
245G GLY 3.1 5.7 + - - -
246G ASP* 3.6 12.0 + - - +
247G MET* 3.2 19.8 - - - +
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Residues in contact with ALA 244 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390F ILE* 4.7 11.9 - - + +
13G ILE 4.8 2.5 - - - +
16G ILE* 4.6 5.2 - - + +
17G GLU* 3.5 34.1 - - + +
20G THR* 4.6 0.9 - - - +
240G ALA 2.7 19.6 + - - +
241G SER* 3.5 8.7 - - - +
242G LYS 3.2 0.2 - - - -
243G ASN* 1.3 72.4 - - - +
245G GLY* 1.3 58.1 + - - +
247G MET* 3.5 7.9 + - - +
248G ILE* 3.1 33.2 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il