Contacts of the helix formed by residues 321 - 359 (chain C) in PDB entry 3FZ7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 321 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79C SER* 4.3 1.8 + - - -
82C LYS* 2.7 21.1 + - + +
84C TRP* 4.1 26.2 - - + +
93C SER* 4.1 27.4 - - - +
320C PRO* 1.3 71.7 - - - +
322C GLY* 1.3 63.6 + - - +
323C GLN 3.3 2.9 - - - -
324C VAL* 3.3 9.8 + - + +
325C ILE* 3.1 26.4 + - + +
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Residues in contact with GLY 322 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C LEU 4.8 0.6 - - - -
76C MET* 3.3 26.3 + - - +
79C SER* 3.4 30.6 + - - -
320C PRO* 3.4 4.6 - - - +
321C ALA* 1.3 77.3 - - - +
323C GLN* 1.3 58.8 + - - +
325C ILE* 3.1 4.4 + - - +
326C ALA* 2.8 25.6 + - - +
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Residues in contact with GLN 323 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320B PRO* 3.8 18.0 - - - +
323B GLN* 5.6 0.4 - - - +
76C MET* 3.8 25.1 - - + +
124C ILE* 5.8 2.7 - - - +
281C PRO* 3.5 18.5 - - + +
282C LEU 2.8 29.6 + - - +
283C GLY* 3.7 24.4 - - - +
284C CYS* 3.9 15.0 - - + -
319C ARG* 5.7 1.1 + - - +
320C PRO* 3.7 29.6 - - - +
321C ALA 3.3 0.2 - - - -
322C GLY* 1.3 75.5 + - - +
324C VAL* 1.3 53.3 + - + +
326C ALA* 3.7 1.6 - - - +
327C GLN* 2.8 34.5 + - - +
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Residues in contact with VAL 324 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84C TRP* 4.2 13.0 - - + -
93C SER 4.8 2.5 - - - +
96C ILE* 4.1 7.9 - - + -
97C ASP* 3.5 42.8 - - + +
100C CYS* 4.1 7.1 - - - -
122C ASN* 3.3 39.9 - - - +
284C CYS* 4.8 1.1 - - - -
286C TRP* 4.4 2.0 - - + -
319C ARG* 5.3 1.6 - - - +
321C ALA* 3.3 12.8 + - + +
323C GLN* 1.3 77.9 - - + +
325C ILE* 1.3 60.5 + - + +
327C GLN* 3.1 7.6 + - - +
328C TYR* 2.9 29.1 + - - +
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Residues in contact with ILE 325 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46B ILE* 3.9 24.3 - - + +
50B LEU* 3.9 22.0 - - + -
75C LEU* 4.1 17.4 - - + +
79C SER* 3.5 20.9 - - - +
82C LYS* 4.1 5.4 - - + -
93C SER* 3.7 24.5 - - - +
96C ILE* 4.4 14.1 - - + -
321C ALA* 3.1 27.0 + - + +
322C GLY* 3.1 8.5 + - - +
324C VAL* 1.3 78.4 - - + +
326C ALA* 1.3 56.6 + - - +
328C TYR* 3.4 9.0 - - - +
329C TYR* 3.0 24.1 + - - +
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Residues in contact with ALA 326 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72C VAL* 4.1 19.1 - - + -
75C LEU* 4.4 8.5 - - + +
76C MET* 4.8 3.8 - - + -
281C PRO* 3.7 30.7 - - + -
322C GLY 2.8 15.6 + - - +
325C ILE* 1.3 74.1 - - - +
327C GLN* 1.3 67.0 + - - +
329C TYR* 3.1 11.3 + - - +
330C GLU* 2.9 26.9 + - + +
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Residues in contact with GLN 327 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100C CYS* 4.3 0.9 - - - -
249C PHE* 4.6 1.4 - - - -
274C GLY* 3.4 18.5 - - - -
278C GLY* 3.0 26.2 + - - -
280C ALA* 3.7 14.1 - - + +
284C CYS* 3.9 3.9 - - - -
286C TRP* 2.9 32.1 + - + -
323C GLN 2.8 19.0 + - - +
324C VAL* 3.1 9.2 + - - +
326C ALA* 1.3 75.6 - - - +
328C TYR* 1.3 59.6 + - - +
330C GLU* 2.9 19.4 + - - +
331C PHE* 3.0 53.0 + - + -
339C TYR* 3.6 1.6 + - - -
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Residues in contact with TYR 328 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25B THR* 3.2 22.4 + - + +
46B ILE* 3.8 28.5 - - + -
49B GLU* 4.3 2.9 - - - -
96C ILE* 3.5 31.4 - - + -
99C ARG* 2.8 51.3 + - + -
100C CYS* 3.7 19.5 - - - -
103C MET* 4.4 19.5 - - + +
324C VAL 2.9 11.4 + - - +
325C ILE 3.4 8.5 - - - +
327C GLN* 1.3 77.8 - - - +
329C TYR* 1.3 56.2 + - - +
331C PHE* 3.2 4.8 + - - +
332C LEU* 2.8 48.4 + - + +
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Residues in contact with TYR 329 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39B ASP* 3.5 28.5 - - - +
42B ALA* 4.1 7.9 - - + -
43B PHE* 4.0 5.8 - - - -
46B ILE* 3.4 21.2 - - + +
69C ASP* 2.9 26.1 + - - -
71C ASN* 3.0 31.6 + - + -
72C VAL* 3.7 25.4 - - + -
75C LEU* 3.5 28.5 - - + -
325C ILE 3.0 7.3 + - - +
326C ALA 3.2 7.6 - - - +
328C TYR* 1.3 77.4 - - - +
330C GLU* 1.3 63.4 + - - +
332C LEU* 3.8 0.6 - - - +
333C ARG* 2.8 57.9 + - - +
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Residues in contact with GLU 330 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69C ASP* 4.7 0.7 - - - +
72C VAL* 3.5 24.7 - - + +
279C LEU* 3.6 35.3 - - + +
280C ALA* 4.6 1.1 - - - +
326C ALA* 2.9 18.9 + - + +
327C GLN* 2.9 11.2 + - - +
329C TYR* 1.3 77.4 - - - +
331C PHE* 1.3 64.1 + - - +
333C ARG* 2.6 42.9 + - - +
334C LEU* 3.0 32.8 + - + +
339C TYR* 3.6 21.1 - - + +
427C ARG* 3.7 12.0 + - - -
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Residues in contact with PHE 331 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32B PHE* 3.4 34.5 - + + -
33B PRO* 3.3 14.0 - - + +
100C CYS* 4.2 20.9 - - + -
103C MET* 4.1 29.4 - - + -
104C VAL* 3.8 30.5 - - + -
249C PHE* 4.0 14.8 - + - -
327C GLN* 3.0 52.4 + - + -
328C TYR* 3.5 6.7 - - + +
330C GLU* 1.3 75.8 - - - +
332C LEU* 1.3 58.3 + - - +
335C GLY* 3.0 26.0 + - - -
339C TYR* 3.5 17.3 - + - -
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Residues in contact with LEU 332 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23B ILE* 5.9 1.6 - - + -
24B SER 5.9 0.7 - - - +
25B THR* 3.9 29.2 - - + -
33B PRO* 4.4 17.4 - - + +
35B HIS 4.2 6.6 - - - +
37B MET* 3.5 41.0 - - + +
42B ALA* 4.5 7.4 - - + +
45B ILE* 4.4 7.4 - - + -
46B ILE* 4.1 14.4 - - + -
103C MET* 5.1 4.7 - - + -
328C TYR* 2.8 51.6 + - + +
329C TYR* 3.8 4.7 - - - +
331C PHE* 1.3 76.4 - - - +
333C ARG* 1.3 61.7 + - - +
334C LEU 3.6 0.2 + - - -
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Residues in contact with ARG 333 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36B GLU* 3.2 6.1 - - - +
37B MET* 3.0 35.2 + - - +
39B ASP* 3.0 37.5 + - - +
42B ALA* 4.0 17.7 - - + +
67C TRP* 5.5 1.0 - - - -
69C ASP* 4.6 5.5 + - - -
279C LEU* 4.5 1.0 - - - +
329C TYR* 2.8 52.1 + - - +
330C GLU* 2.6 34.5 + - - +
332C LEU* 1.3 74.4 - - - +
334C LEU* 1.3 87.6 + - - +
342C VAL* 5.3 3.0 - - - +
427C ARG* 3.2 21.9 - - - +
16D SER 5.6 0.2 + - - -
17D ARG 4.8 13.3 + - - -
18D PHE 6.3 0.4 - - - -
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Residues in contact with LEU 334 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35B HIS 4.0 0.2 - - - -
36B GLU* 3.3 23.4 + - - +
279C LEU* 3.6 32.1 - - + -
330C GLU* 3.0 19.3 + - - +
333C ARG* 1.3 113.7 - - + +
335C GLY* 1.3 60.0 + - - +
338C GLY* 2.8 42.1 + - - +
339C TYR* 3.6 28.3 - - + +
342C VAL* 4.1 11.2 - - + -
18D PHE 6.4 0.2 - - - -
19D GLY* 5.6 2.7 - - - -
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Residues in contact with GLY 335 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32B PHE* 3.7 11.0 - - - -
33B PRO* 3.1 20.6 - - - -
34B LEU 4.1 0.7 - - - -
35B HIS 4.0 7.5 + - - -
331C PHE 3.0 22.8 + - - -
333C ARG 4.0 0.2 - - - -
334C LEU* 1.3 71.6 - - - +
336C ARG* 1.3 66.6 + - - -
337C GLU 3.1 0.4 - - - -
339C TYR* 2.9 26.4 + - - -
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Residues in contact with ARG 336 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32B PHE* 3.9 17.9 + - + +
33B PRO 2.9 17.1 + - - +
34B LEU* 3.4 29.5 + - + +
106C ASP* 4.0 22.4 + - - -
107C LEU* 3.8 33.5 + - - +
109C HIS* 5.9 4.6 + - - -
252C PRO* 4.0 17.2 + - - +
253C PHE* 4.0 15.9 - - + -
335C GLY* 1.3 70.8 - - - -
337C GLU* 1.3 62.3 - - - +
339C TYR* 4.0 0.3 - - - +
340C THR* 2.8 34.0 + - - +
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Residues in contact with GLU 337 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34B LEU 3.0 15.8 + - - +
35B HIS* 3.1 33.3 + - - +
36B GLU* 3.0 34.9 + - + +
336C ARG* 1.3 80.6 - - - +
338C GLY* 1.3 60.5 + - - +
340C THR* 3.5 6.0 + - - -
341C LYS* 3.3 32.6 + - + +
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Residues in contact with GLY 338 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36B GLU* 3.7 21.1 - - - -
334C LEU* 2.8 37.4 + - - -
337C GLU* 1.3 72.1 - - - +
339C TYR* 1.3 57.5 + - - +
340C THR 3.2 1.3 - - - -
341C LYS* 3.2 5.6 + - - +
342C VAL* 2.9 33.4 + - - +
19D GLY* 5.0 0.6 - - - -
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Residues in contact with TYR 339 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32B PHE* 3.8 21.3 - + - -
249C PHE* 4.8 2.9 - + + -
253C PHE* 3.5 40.6 - + + -
277C PHE 3.8 13.0 - - - -
278C GLY* 2.6 32.3 + - - -
279C LEU* 3.8 9.0 - - + -
330C GLU* 3.6 13.0 - - - +
331C PHE* 3.5 23.2 - + - -
334C LEU* 3.6 28.6 - - + +
335C GLY 2.9 27.7 + - - +
338C GLY* 1.3 70.0 - - - -
340C THR* 1.3 56.4 + - - +
342C VAL* 4.4 4.5 - - - -
343C GLN* 2.9 49.9 + - - +
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Residues in contact with THR 340 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253C PHE* 3.1 37.6 + - - +
254C VAL* 4.1 2.9 - - - +
336C ARG* 2.8 24.7 + - - +
337C GLU* 3.6 6.3 - - - -
338C GLY 3.2 0.2 - - - -
339C TYR* 1.3 75.5 - - - +
341C LYS* 1.3 66.0 + - + +
344C ASN* 2.9 41.9 + - - +
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Residues in contact with LYS 341 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36B GLU* 2.9 38.2 + - - -
337C GLU* 3.3 23.8 + - + +
338C GLY 3.2 8.8 + - - +
340C THR* 1.3 82.2 - - + +
342C VAL* 1.3 61.8 + - - +
345C ALA* 3.1 23.0 + - - +
14D LEU* 3.6 35.7 - - + +
15D ASP 5.1 0.2 - - - +
19D GLY* 2.9 34.6 + - - +
20D ALA* 4.5 4.9 - - - +
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Residues in contact with VAL 342 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279C LEU* 4.1 22.0 - - + -
333C ARG* 5.3 2.7 - - - +
334C LEU* 4.1 23.3 - - + -
338C GLY 2.9 21.2 + - - +
339C TYR* 3.2 6.0 + - - +
341C LYS* 1.3 76.5 - - - +
343C GLN* 1.3 73.7 + - - +
345C ALA 3.5 0.3 + - - -
346C SER* 3.5 11.0 + - - +
427C ARG* 4.4 7.2 - - + -
16D SER* 3.4 50.3 - - - +
17D ARG 5.7 0.2 - - - +
19D GLY* 4.2 11.4 - - - +
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Residues in contact with GLN 343 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249C PHE 2.9 28.4 + - - +
250C LEU* 3.7 20.4 - - + -
253C PHE* 4.6 6.3 - - + -
254C VAL* 3.9 13.9 - - + -
277C PHE* 2.9 42.1 + - - +
279C LEU* 4.5 3.6 - - - +
339C TYR* 2.9 35.2 + - + +
342C VAL* 1.3 83.7 - - - +
344C ASN* 1.3 68.1 + - - +
346C SER* 3.0 9.8 + - - -
347C TYR* 3.0 28.1 + - + -
376C PRO* 4.7 0.2 - - - +
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Residues in contact with ASN 344 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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254C VAL* 3.2 25.8 - - - +
340C THR* 2.9 27.3 + - - +
341C LYS 3.7 3.8 - - - +
343C GLN* 1.3 75.9 - - - +
345C ALA* 1.3 54.7 + - - +
347C TYR* 3.0 12.3 + - - +
348C GLN* 2.8 49.4 + - - +
371C PRO* 5.9 5.1 - - - +
14D LEU* 3.8 15.8 - - + +
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Residues in contact with ALA 345 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341C LYS 3.1 11.5 + - - +
342C VAL 3.6 8.3 - - - +
343C GLN 3.2 0.4 - - - -
344C ASN* 1.3 75.5 - - - +
346C SER* 1.3 62.5 + - - +
348C GLN* 3.4 15.5 + - - +
349C VAL* 3.1 28.2 + - - +
430C GLU* 4.5 2.2 - - - +
14D LEU* 3.5 21.3 - - - +
15D ASP 3.6 1.8 - - - -
16D SER* 3.4 31.2 - - - +
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Residues in contact with SER 346 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277C PHE* 5.0 4.3 - - - -
342C VAL* 3.5 10.9 + - - +
343C GLN* 3.0 13.3 + - - -
345C ALA* 1.3 78.1 - - - +
347C TYR* 1.3 57.9 + - - +
349C VAL* 3.2 9.7 + - - +
350C ALA 3.0 22.5 + - - -
376C PRO* 3.6 17.6 - - - +
425C CYS* 3.5 25.4 + - - +
426C ARG 3.9 13.2 + - - -
427C ARG* 4.1 1.2 + - - -
429C PHE 5.8 1.5 + - - -
16D SER* 3.9 12.5 + - - -
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Residues in contact with TYR 347 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217C TYR* 3.7 9.7 + - - -
250C LEU* 3.6 25.2 - - + +
254C VAL* 3.5 30.1 - - + +
343C GLN 3.0 25.6 + - - -
344C ASN* 3.4 11.9 - - - +
346C SER* 1.3 73.8 - - - +
348C GLN* 1.3 59.9 + - + +
350C ALA* 3.2 1.1 + - - +
351C ALA* 2.8 33.0 + - - +
369C GLY 3.2 23.6 - - - +
370C ARG 3.9 1.3 - - - -
371C PRO* 3.6 29.5 + - + +
374C GLY 2.5 32.0 + - - -
375C ILE* 3.5 6.9 - - - -
376C PRO* 3.5 27.6 - - + +
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Residues in contact with GLN 348 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344C ASN* 2.8 29.4 + - - +
345C ALA* 3.5 11.5 - - - +
347C TYR* 1.3 74.0 - - + +
349C VAL* 1.3 62.8 + - - +
351C ALA* 3.4 4.6 + - - +
352C TYR* 3.1 25.8 + - - +
431C MET* 3.5 14.2 - - + +
13D LEU* 3.2 38.6 + - - +
14D LEU* 2.9 37.2 + - - +
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Residues in contact with VAL 349 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345C ALA* 3.1 15.3 + - + +
346C SER* 3.4 10.1 - - - +
347C TYR 3.1 0.2 - - - -
348C GLN* 1.3 78.1 - - - +
350C ALA* 1.3 64.7 + - - +
351C ALA 3.2 0.2 + - - -
352C TYR* 3.3 2.4 + - - +
353C LEU* 3.0 22.2 + - + +
425C CYS* 3.9 6.5 - - + -
429C PHE* 3.7 46.2 - - + +
430C GLU* 4.0 4.5 - - - +
431C MET* 3.7 40.4 - - + +
434C ALA* 4.1 12.3 - - + -
14D LEU 5.8 2.0 - - - +
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Residues in contact with ALA 350 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
346C SER 3.0 8.5 + - - +
347C TYR 3.2 3.8 + - - +
349C VAL* 1.3 76.4 - - - +
351C ALA* 1.3 56.9 + - - +
353C LEU* 3.2 1.5 + - - -
354C ALA* 2.9 25.8 + - - +
368C THR 4.6 1.3 - - - -
369C GLY* 3.8 11.2 - - - -
376C PRO* 3.7 37.2 - - + -
377C ALA 3.8 4.0 - - - +
378C VAL* 3.2 15.6 - - + +
425C CYS* 3.7 16.8 - - - -
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Residues in contact with ALA 351 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
347C TYR 2.8 17.1 + - - +
348C GLN* 3.9 5.4 - - - +
349C VAL 3.1 0.2 - - - -
350C ALA* 1.3 73.7 - - - +
352C TYR* 1.3 67.1 + - - +
354C ALA* 3.3 2.8 + - - +
355C ASP* 3.0 33.8 + - - +
368C THR 3.8 13.7 - - - +
369C GLY 4.2 9.0 - - - +
370C ARG* 6.0 1.8 - - + -
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Residues in contact with TYR 352 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348C GLN 3.1 17.6 + - - +
349C VAL 3.6 4.5 - - - +
351C ALA* 1.3 75.5 - - - +
353C LEU* 1.3 69.1 + - + +
355C ASP* 3.2 6.6 + - + +
356C GLU* 2.9 58.4 + - + +
431C MET* 3.6 31.0 - - + -
434C ALA* 4.6 12.1 - - + -
435C GLU* 2.0 40.6 + - + -
438C LEU* 3.8 16.5 - - + +
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Residues in contact with LEU 353 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
349C VAL* 3.0 19.5 + - + +
350C ALA 3.7 6.5 - - - +
352C TYR* 1.3 76.8 - - + +
354C ALA* 1.3 59.8 + - - +
356C GLU* 3.1 2.4 + - - -
357C ILE* 2.8 45.2 + - + +
378C VAL* 4.2 7.0 - - + -
423C ILE* 4.3 14.8 - - + -
425C CYS* 4.1 11.9 - - - -
429C PHE* 3.6 32.8 - - + -
434C ALA* 3.8 31.9 - - + +
437C LEU* 4.1 14.6 - - + -
438C LEU* 4.0 20.6 - - + -
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Residues in contact with ALA 354 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350C ALA 2.9 13.3 + - - +
351C ALA 3.5 8.3 - - - +
353C LEU* 1.3 77.5 - - - +
355C ASP* 1.3 59.8 + - - +
358C ALA* 3.1 30.0 + - - +
365C PHE* 3.5 7.6 - - + -
368C THR* 3.6 41.3 - - + +
378C VAL* 4.0 18.0 - - + +
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Residues in contact with ASP 355 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351C ALA* 3.0 22.5 + - - +
352C TYR* 3.2 6.8 + - + +
354C ALA* 1.3 80.9 - - - +
356C GLU* 1.3 65.4 + - + +
358C ALA* 4.0 6.6 - - - +
359C LYS* 3.6 29.6 + - - +
368C THR* 5.6 1.7 - - - -
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Residues in contact with GLU 356 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352C TYR* 2.9 50.5 + - + +
353C LEU 3.9 1.3 - - - +
355C ASP* 1.3 81.7 - - + +
357C ILE* 1.3 65.7 + - - +
358C ALA 3.3 0.2 - - - -
359C LYS* 3.1 46.7 + - - +
360C LEU* 3.5 12.9 - - - +
438C LEU* 3.4 30.0 - - + +
442C LYS* 5.4 5.5 + - - -
----------------------------------------------------------
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Residues in contact with ILE 357 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353C LEU* 2.8 34.9 + - + +
354C ALA 4.3 1.3 - - - +
356C GLU* 1.3 70.7 - - - +
358C ALA* 1.3 62.7 + - - +
360C LEU* 3.0 19.6 + - - +
363C TYR* 3.3 21.2 - - + -
365C PHE* 4.1 9.4 - - + -
378C VAL* 4.9 2.2 - - + -
380C PHE* 3.9 15.3 - - + -
423C ILE* 3.6 31.6 - - + -
437C LEU* 5.0 2.0 - - + -
438C LEU* 4.2 16.4 - - + -
441C TYR* 3.6 42.6 - - + +
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Residues in contact with ALA 358 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354C ALA 3.1 20.3 + - - +
355C ASP* 4.0 9.0 - - - +
356C GLU 3.3 0.2 - - - -
357C ILE* 1.3 74.4 - - - +
359C LYS* 1.3 62.2 + - + +
360C LEU 3.2 1.4 + - - -
361C GLY 3.4 14.0 - - - +
363C TYR* 4.5 3.0 + - - -
365C PHE* 3.5 26.5 - - + -
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Residues in contact with LYS 359 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355C ASP* 3.6 21.6 - - - +
356C GLU* 3.1 38.3 + - - +
357C ILE 3.0 1.4 + - - -
358C ALA* 1.3 75.4 - - + +
360C LEU* 1.3 65.6 + - + +
361C GLY 3.7 0.9 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il