Contacts of the helix formed by residues 321 - 359 (chain D) in PDB entry 3FZ7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 321 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79D SER 4.4 0.8 + - - -
82D LYS* 2.8 21.7 + - + +
84D TRP* 4.2 21.8 - - + -
93D SER* 3.9 31.0 - - - +
319D ARG 3.7 0.2 + - - -
320D PRO* 1.3 69.8 - - - +
322D GLY* 1.3 65.3 + - - +
323D GLN 3.2 3.7 + - - -
324D VAL* 3.3 12.4 + - + +
325D ILE* 3.1 23.9 + - + +
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Residues in contact with GLY 322 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75D LEU 4.8 0.4 - - - -
76D MET* 3.4 24.6 + - - +
79D SER* 3.4 33.6 + - - -
320D PRO* 3.4 4.2 - - - +
321D ALA* 1.3 77.7 - - - +
323D GLN* 1.3 53.3 + - - +
325D ILE* 3.2 3.0 + - - +
326D ALA* 2.7 31.5 + - - +
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Residues in contact with GLN 323 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76D MET* 3.7 26.1 - - + +
122D ASN* 6.1 0.4 - - - +
124D ILE* 5.8 3.5 - - - +
280D ALA* 4.4 0.7 - - - +
281D PRO* 3.7 15.3 - - + +
282D LEU 3.1 29.3 + - - +
283D GLY* 3.5 24.0 - - - +
284D CYS* 4.0 12.6 - - + -
319D ARG* 5.6 1.4 + - - +
320D PRO* 3.5 33.0 - - - +
321D ALA 3.3 0.6 - - - -
322D GLY* 1.3 78.3 + - - +
324D VAL* 1.3 53.7 + - - +
326D ALA* 3.2 2.3 + - - +
327D GLN* 2.7 36.5 + - - +
320E PRO* 3.7 16.8 - - - +
323E GLN* 5.2 1.6 - - - +
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Residues in contact with VAL 324 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84D TRP* 4.1 11.9 - - + -
93D SER 4.8 2.2 - - - +
96D ILE* 4.3 5.4 - - + -
97D ASP* 3.7 42.6 - - + +
100D CYS* 3.9 6.3 - - - -
122D ASN* 3.2 41.3 - - - +
284D CYS* 4.6 2.2 - - - -
286D TRP* 4.3 2.7 - - + -
319D ARG* 5.2 1.3 - - - +
320D PRO 5.6 0.6 + - - +
321D ALA* 3.5 13.7 - - + +
323D GLN* 1.3 78.0 - - + +
325D ILE* 1.3 62.2 + - + +
327D GLN* 3.2 8.5 + - - +
328D TYR* 2.9 28.6 + - - +
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Residues in contact with ILE 325 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75D LEU* 4.1 17.3 - - + -
79D SER* 3.4 21.8 - - - +
82D LYS* 3.9 4.9 - - + -
93D SER* 3.6 25.1 - - - +
96D ILE* 4.4 16.6 - - + -
321D ALA* 3.1 15.8 + - + +
322D GLY* 3.5 6.5 - - - +
324D VAL* 1.3 85.3 - - + +
326D ALA* 1.3 60.9 - - - +
328D TYR* 3.3 4.9 + - - +
329D TYR* 3.0 20.1 + - - +
46E ILE* 3.9 25.4 - - + +
50E LEU* 3.8 25.8 - - + -
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Residues in contact with ALA 326 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72D VAL* 3.9 21.1 - - + -
75D LEU* 4.6 7.4 - - + +
76D MET* 4.6 3.1 - - + -
281D PRO* 3.5 30.7 - - + -
322D GLY 2.7 20.4 + - - +
325D ILE* 1.3 72.0 - - - +
327D GLN* 1.3 65.1 + - - +
329D TYR* 3.2 11.4 - - - +
330D GLU* 3.1 25.9 + - - +
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Residues in contact with GLN 327 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100D CYS* 4.5 0.9 - - - -
249D PHE* 4.4 0.7 - - - -
274D GLY* 3.3 18.0 - - - -
278D GLY* 3.0 27.1 + - - +
280D ALA* 3.7 18.3 - - + +
284D CYS* 4.2 3.6 - - - -
286D TRP* 2.9 40.4 + - + -
323D GLN 2.7 20.1 + - - +
324D VAL* 3.2 11.2 + - - +
326D ALA* 1.3 72.4 - - - +
328D TYR* 1.3 58.0 + - - +
330D GLU* 3.1 4.9 + - - +
331D PHE* 3.0 54.1 + - + -
339D TYR* 3.8 1.2 + - - -
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Residues in contact with TYR 328 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96D ILE* 3.5 29.8 - - + -
99D ARG* 3.1 45.6 + - + -
100D CYS* 3.7 19.5 - - - -
103D MET* 4.1 26.2 - - + +
324D VAL 2.9 12.7 + - - +
325D ILE 3.4 7.9 - - - +
327D GLN* 1.3 75.0 - - - +
329D TYR* 1.3 64.9 + - - +
331D PHE* 3.2 5.4 + - + +
332D LEU* 2.8 45.2 + - + +
25E THR* 3.4 21.1 + - + +
46E ILE* 3.3 36.1 - - + -
49E GLU* 4.8 1.8 - - - -
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Residues in contact with TYR 329 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69D ASP* 3.3 22.0 + - - -
71D ASN* 2.9 37.7 + - + +
72D VAL* 3.6 26.5 - - + -
75D LEU* 3.5 29.2 - - + -
325D ILE 3.0 8.6 + - - +
326D ALA 3.2 9.2 - - - +
328D TYR* 1.3 76.2 - - - +
330D GLU* 1.3 61.8 + - - +
332D LEU* 3.9 0.9 - - - +
333D ARG* 2.9 56.3 + - - +
39E ASP* 3.6 28.3 + - - +
42E ALA* 4.3 6.1 - - + -
43E PHE* 4.0 13.5 - - - -
46E ILE* 3.5 12.0 - - + +
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Residues in contact with GLU 330 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69D ASP* 4.7 0.3 - - - +
72D VAL* 3.5 26.7 - - - +
278D GLY 4.4 0.4 - - - +
279D LEU* 3.7 36.5 - - + +
280D ALA* 4.8 0.2 - - - -
281D PRO* 5.9 0.2 - - - +
326D ALA* 3.1 12.9 + - - +
327D GLN* 3.1 8.8 + - - +
329D TYR* 1.3 73.8 - - - +
331D PHE* 1.3 68.8 + - - +
333D ARG* 2.7 41.1 + - - -
334D LEU* 3.0 29.9 + - + +
339D TYR* 3.4 20.8 - - + +
427D ARG* 3.7 12.3 + - - -
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Residues in contact with PHE 331 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100D CYS* 4.3 20.4 - - + -
103D MET* 4.0 30.7 - - + -
104D VAL* 3.8 31.2 - - + -
249D PHE* 3.9 17.5 - + - -
327D GLN* 3.0 52.1 + - + -
328D TYR* 3.2 9.2 + - + +
330D GLU* 1.3 73.9 - - - +
332D LEU* 1.3 57.3 + - - +
335D GLY* 2.8 30.1 + - - -
339D TYR* 3.4 19.7 - - - -
32E PHE* 3.8 28.4 - + + -
33E PRO* 3.7 9.0 - - + +
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Residues in contact with LEU 332 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103D MET* 5.3 2.2 - - + -
328D TYR* 2.8 59.8 + - + +
329D TYR 3.9 3.4 - - - +
331D PHE* 1.3 72.4 - - - +
333D ARG* 1.3 67.6 + - - +
334D LEU 3.5 0.2 + - - -
23E ILE* 5.9 1.1 - - + -
24E SER 5.8 0.7 - - - +
25E THR* 4.6 9.4 - - + -
33E PRO* 4.4 16.8 - - + +
35E HIS 4.2 6.2 - - - +
37E MET* 3.7 41.9 + - + +
42E ALA* 4.3 13.7 - - + -
45E ILE* 4.3 16.4 - - + -
46E ILE* 4.0 16.8 - - + -
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Residues in contact with ARG 333 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17C ARG 4.7 14.1 + - - -
18C PHE 6.3 0.4 - - - -
67D TRP* 5.3 1.2 - - - -
69D ASP* 4.3 8.5 + - - -
279D LEU* 5.0 0.2 - - - +
329D TYR* 2.9 47.0 + - - +
330D GLU* 2.7 33.9 + - - +
332D LEU* 1.3 80.3 - - - +
334D LEU* 1.4 87.1 + - - +
342D VAL* 5.6 2.2 - - - +
427D ARG* 3.1 22.6 - - - +
36E GLU* 3.3 6.8 - - - +
37E MET* 3.1 31.3 + - - +
39E ASP* 3.0 37.3 + - - +
42E ALA* 3.9 17.7 - - + -
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Residues in contact with LEU 334 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19C GLY* 5.6 4.0 - - - +
279D LEU* 3.6 30.5 - - + -
330D GLU* 3.0 17.2 + - - +
333D ARG* 1.4 114.7 - - + +
335D GLY* 1.3 56.3 + - - +
338D GLY* 2.7 43.0 + - - -
339D TYR* 3.5 26.2 - - + +
342D VAL* 4.1 20.0 - - + -
35E HIS 3.9 2.7 - - - -
36E GLU* 3.3 15.5 + - + +
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Residues in contact with GLY 335 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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331D PHE 2.8 23.8 + - - -
334D LEU* 1.3 76.6 - - - +
336D ARG* 1.3 59.8 + - - -
339D TYR* 3.0 25.9 + - - -
32E PHE* 3.7 9.2 - - - -
33E PRO* 3.1 17.9 - - - -
34E LEU 4.1 0.7 - - - -
35E HIS 3.7 12.4 + - - -
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Residues in contact with ARG 336 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106D ASP* 3.7 24.0 + - - -
107D LEU* 3.9 33.3 + - - +
109D HIS* 5.6 6.7 - - - -
252D PRO* 4.3 14.6 + - - +
253D PHE* 4.1 15.1 - - + -
335D GLY* 1.3 68.8 - - - -
337D GLU* 1.3 63.5 + - - +
339D TYR* 3.5 0.9 + - - +
340D THR* 2.7 34.8 + - - +
32E PHE* 3.9 16.3 + - + +
33E PRO 2.9 17.7 + - - +
34E LEU* 3.2 30.0 + - + +
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Residues in contact with GLU 337 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10C ARG* 5.6 6.6 + - - +
336D ARG* 1.3 80.6 - - - +
338D GLY* 1.3 61.5 + - - +
340D THR* 3.3 10.9 + - - -
341D LYS* 3.4 24.6 + - + +
34E LEU 3.1 12.2 + - - +
35E HIS* 2.8 42.2 + - - +
36E GLU* 3.1 36.4 - - - +
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Residues in contact with GLY 338 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19C GLY* 5.0 1.7 - - - -
334D LEU* 2.7 42.7 + - - -
337D GLU* 1.3 72.1 - - - +
339D TYR* 1.3 63.7 + - - +
340D THR 3.2 0.2 + - - -
341D LYS* 3.2 7.1 + - - +
342D VAL* 2.9 25.6 + - - +
36E GLU* 3.5 16.0 - - - +
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Residues in contact with TYR 339 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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249D PHE* 4.9 2.2 - + - -
253D PHE* 3.5 43.1 - + + -
277D PHE 3.9 7.2 - - - -
278D GLY* 2.8 25.0 + - - -
279D LEU* 3.7 26.7 - - + -
330D GLU* 3.4 28.0 - - - +
331D PHE* 3.4 18.1 - + - -
334D LEU* 3.5 17.0 - - + -
335D GLY 3.0 25.5 + - - +
338D GLY* 1.3 75.6 - - - +
340D THR* 1.3 58.5 + - - +
342D VAL* 4.4 4.3 - - - +
343D GLN* 2.9 48.9 + - - +
32E PHE* 4.0 19.5 - + - -
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Residues in contact with THR 340 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8C ASP* 4.0 17.2 + - - +
10C ARG* 3.9 33.0 - - - +
253D PHE* 3.6 39.9 + - - +
254D VAL* 3.8 2.8 - - + +
336D ARG* 2.7 23.8 + - - +
337D GLU* 3.8 5.8 - - - -
338D GLY 3.1 0.4 - - - -
339D TYR* 1.3 74.9 - - - +
341D LYS* 1.3 57.3 + - - +
344D ASN* 2.9 36.9 + - - +
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Residues in contact with LYS 341 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10C ARG* 4.6 15.7 - - + +
14C LEU* 3.7 31.5 - - + +
19C GLY* 2.9 38.5 + - - +
20C ALA* 4.6 5.5 - - - +
337D GLU* 3.4 18.5 + - + +
338D GLY* 3.2 6.2 + - - +
339D TYR 3.2 0.2 - - - -
340D THR* 1.3 75.5 - - - +
342D VAL* 1.3 64.6 + - - +
344D ASN* 3.4 2.0 + - - +
345D ALA* 3.0 23.9 + - - +
36E GLU* 2.4 42.4 + - - +
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Residues in contact with VAL 342 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15C ASP 4.8 0.7 - - - -
16C SER* 3.5 38.4 - - - +
17C ARG 5.4 0.9 - - - +
19C GLY* 4.1 16.4 - - - +
279D LEU* 4.0 20.9 - - + -
333D ARG* 5.6 1.8 - - - +
334D LEU* 4.1 21.1 - - + -
338D GLY 2.9 20.1 + - - +
339D TYR* 3.9 5.8 - - - +
341D LYS* 1.3 75.1 - - - +
343D GLN* 1.3 74.5 + - - +
345D ALA* 3.2 14.2 + - - +
346D SER* 3.3 9.9 + - - +
427D ARG* 4.4 7.2 - - + -
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Residues in contact with GLN 343 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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249D PHE 3.0 24.6 + - - +
250D LEU* 3.8 19.5 - - + -
253D PHE* 4.3 6.7 - - + -
254D VAL* 3.9 15.7 - - + -
277D PHE* 2.9 44.8 + - - +
279D LEU* 4.2 4.8 - - - +
339D TYR* 2.9 35.0 + - - +
342D VAL* 1.3 82.6 - - - +
344D ASN* 1.3 66.0 + - - +
346D SER* 3.0 18.1 + - - +
347D TYR* 3.0 20.9 + - + -
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Residues in contact with ASN 344 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8C ASP 3.4 21.1 - - - +
9C LEU* 3.7 20.8 - - - +
10C ARG* 3.5 24.6 + - - +
14C LEU* 3.7 13.2 - - + -
254D VAL* 3.6 12.1 - - - +
340D THR* 2.9 27.3 + - - +
341D LYS 3.5 5.2 - - - +
343D GLN* 1.3 75.9 - - - +
345D ALA* 1.3 62.5 + - - +
347D TYR* 3.1 9.4 + - - +
348D GLN* 3.0 41.1 + - - +
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Residues in contact with ALA 345 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14C LEU* 3.4 31.9 - - + +
15C ASP 3.6 2.5 - - - -
16C SER* 3.5 20.0 - - - +
341D LYS 3.0 11.2 + - - +
342D VAL 3.2 9.6 + - - +
344D ASN* 1.3 76.8 - - - +
346D SER* 1.3 60.9 + - - +
348D GLN* 3.4 14.5 + - - +
349D VAL* 3.2 27.6 + - - +
430D GLU* 4.5 1.6 - - - +
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Residues in contact with SER 346 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C SER* 3.9 13.7 + - - -
277D PHE* 4.8 4.5 - - - -
342D VAL* 3.3 8.8 + - - +
343D GLN* 3.0 15.5 + - - -
345D ALA* 1.3 77.0 - - - +
347D TYR* 1.3 58.9 + - - +
349D VAL* 3.2 8.7 + - - +
350D ALA* 3.0 27.9 + - - +
376D PRO* 3.7 15.3 - - - +
425D CYS* 3.6 26.1 + - - +
426D ARG* 4.2 9.4 + - - -
427D ARG* 4.2 1.6 + - - -
429D PHE 5.9 0.9 - - - -
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Residues in contact with TYR 347 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C LEU* 6.0 0.4 - - + -
217D TYR* 3.5 3.5 + - - -
250D LEU* 3.5 35.7 - - + +
254D VAL* 3.2 31.9 - - + +
343D GLN 3.0 25.9 + - - -
344D ASN* 3.1 9.6 + - - +
346D SER* 1.3 75.0 - - - +
348D GLN* 1.3 60.6 + - + +
350D ALA* 3.2 0.8 + - - +
351D ALA* 2.9 33.1 + - - +
369D GLY 3.3 23.4 - - - +
370D ARG 4.0 0.4 - - - -
371D PRO* 3.3 32.1 + - + +
374D GLY 2.7 29.6 + - - -
375D ILE* 3.5 16.1 - - - -
376D PRO* 3.6 13.7 - - + -
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Residues in contact with GLN 348 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10C ARG 4.1 12.3 + - - -
12C GLU 2.9 26.6 + - - -
13C LEU* 3.5 22.9 - - + +
14C LEU* 2.9 28.6 + - - +
344D ASN* 3.0 28.6 + - - +
345D ALA* 3.6 12.4 - - - +
346D SER 3.3 0.2 - - - -
347D TYR* 1.3 75.7 - - + +
349D VAL* 1.3 62.9 + - - +
351D ALA* 4.2 5.0 - - - +
352D TYR* 3.1 25.8 + - - +
431D MET* 3.4 6.1 - - + +
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Residues in contact with VAL 349 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14C LEU 5.9 1.1 - - - +
345D ALA 3.2 16.1 + - - +
346D SER* 3.5 8.3 - - - +
348D GLN* 1.3 77.8 - - - +
350D ALA* 1.3 63.6 + - - +
352D TYR* 3.6 2.4 - - - +
353D LEU* 3.1 23.0 + - + +
425D CYS* 3.8 18.8 - - + -
429D PHE* 3.6 29.8 - - + +
430D GLU* 4.0 5.4 - - - +
431D MET* 3.7 33.2 - - + +
434D ALA* 3.8 22.9 - - + -
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Residues in contact with ALA 350 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
346D SER 3.0 14.4 + - - +
347D TYR 3.2 3.3 + - - +
349D VAL* 1.3 76.7 - - - +
351D ALA* 1.3 57.4 + - - +
353D LEU* 3.2 2.2 + - - -
354D ALA* 2.8 26.3 + - - +
368D THR 4.3 1.6 - - - -
369D GLY* 3.8 12.6 - - - -
376D PRO* 3.7 23.3 - - + -
377D ALA 4.0 1.3 - - - +
378D VAL* 3.2 15.5 - - + +
425D CYS* 3.6 23.3 - - - -
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Residues in contact with ALA 351 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
347D TYR 2.9 21.2 + - - +
348D GLN* 4.2 3.8 - - - +
350D ALA* 1.3 68.4 - - - +
352D TYR* 1.3 66.5 + - - +
354D ALA 3.3 0.5 + - - -
355D ASP* 3.0 31.4 + - - +
368D THR 3.4 14.5 + - - +
369D GLY 4.0 6.7 + - - +
370D ARG* 3.4 25.4 + - - +
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Residues in contact with TYR 352 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348D GLN 3.1 20.2 + - - +
349D VAL 3.6 3.8 - - - +
351D ALA* 1.3 76.2 - - - +
353D LEU* 1.3 64.4 + - - +
355D ASP* 3.0 9.3 + - + +
356D GLU* 2.9 53.0 + - + +
431D MET* 3.4 30.3 - - + -
434D ALA* 5.0 5.4 - - + -
435D GLU* 2.8 43.1 + - + +
438D LEU* 3.7 12.5 - - + +
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Residues in contact with LEU 353 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
349D VAL* 3.1 14.0 + - + +
350D ALA 3.4 7.0 - - - +
352D TYR* 1.3 76.5 - - + +
354D ALA* 1.3 65.5 + - - +
356D GLU* 4.6 2.2 - - - +
357D ILE* 2.9 36.7 + - + +
378D VAL* 4.0 6.7 - - + -
423D ILE* 4.1 17.0 - - + -
425D CYS* 3.9 16.8 - - - -
429D PHE* 3.6 31.6 - - + -
434D ALA* 4.0 16.6 - - + +
437D LEU* 3.8 18.2 - - + -
438D LEU* 3.8 30.3 - - + -
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Residues in contact with ALA 354 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350D ALA 2.8 19.4 + - - +
351D ALA 3.7 3.1 - - - +
352D TYR 3.2 0.2 - - - -
353D LEU* 1.3 72.1 - - - +
355D ASP* 1.3 63.2 + - - +
357D ILE* 3.5 0.6 + - - -
358D ALA* 3.1 24.6 + - - +
365D PHE* 3.6 9.1 - - + -
368D THR* 3.6 43.1 - - + +
370D ARG* 4.2 1.3 - - - +
378D VAL* 3.8 20.8 - - + +
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Residues in contact with ASP 355 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351D ALA 3.0 17.0 + - - +
352D TYR* 3.0 10.5 + - + +
354D ALA* 1.3 76.3 - - - +
356D GLU* 1.3 66.8 + - + +
358D ALA* 3.4 14.4 + - - +
359D LYS* 3.6 22.2 - - - +
368D THR* 5.5 0.5 - - - +
370D ARG* 3.1 32.3 + - - -
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Residues in contact with GLU 356 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352D TYR* 2.9 56.2 + - + +
353D LEU 3.9 0.7 - - - +
355D ASP* 1.3 75.6 - - + +
357D ILE* 1.3 65.6 + - - +
359D LYS* 3.0 50.8 + - - +
360D LEU* 3.6 12.2 - - - +
438D LEU* 3.5 27.5 - - + +
442D LYS* 5.4 8.0 + - - -
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Residues in contact with ILE 357 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353D LEU* 2.9 34.9 + - + +
354D ALA* 3.9 3.1 - - - +
356D GLU* 1.3 75.3 - - - +
358D ALA* 1.3 61.6 + - - +
360D LEU* 3.1 19.5 + - - +
363D TYR* 3.2 15.6 - - + -
365D PHE* 3.8 16.8 - - + -
378D VAL* 4.7 3.6 - - + -
380D PHE* 3.9 15.5 - - + -
423D ILE* 3.6 30.7 - - + -
437D LEU* 5.1 1.3 - - + -
438D LEU* 4.0 13.2 - - + -
441D TYR* 3.8 36.8 - - + +
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Residues in contact with ALA 358 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354D ALA 3.1 15.0 + - - +
355D ASP* 3.7 9.6 - - - +
356D GLU 3.1 1.0 - - - -
357D ILE* 1.3 75.3 - - - +
359D LYS* 1.3 60.8 + - + +
360D LEU 3.3 0.6 + - - -
361D GLY 3.6 13.1 - - - +
363D TYR* 4.4 2.8 + - - +
365D PHE* 3.5 29.6 - - + -
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Residues in contact with LYS 359 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355D ASP* 3.6 18.7 - - - +
356D GLU* 3.0 40.8 + - - +
358D ALA* 1.3 80.0 - - + +
360D LEU* 1.3 66.4 + - + +
361D GLY 3.6 0.9 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il