Contacts of the helix formed by residues 49 - 95 (chain C) in PDB entry 3GWK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 49 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C GLN* 5.7 3.1 - - - -
40C ILE* 4.0 21.8 - - + -
44C TRP* 3.7 35.4 - + + -
46C GLY 5.4 0.4 + - - -
47C SER 3.3 0.6 - - - -
48C THR* 1.3 86.6 - - + +
50C ASP* 1.3 59.5 + - - +
51C SER 3.3 3.1 + - - -
52C PHE* 3.3 32.2 + + + +
53C GLU* 2.9 29.5 + - + +
73E ILE* 4.2 11.2 - - + -
76E GLN* 3.8 31.9 - - + -
77E LEU* 3.7 34.8 - - + -
80E VAL* 4.7 2.9 - - + -
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Residues in contact with ASP 50 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C GLY 3.9 5.9 - - - +
47C SER* 3.1 44.5 + - - +
48C THR 3.4 0.6 - - - -
49C PHE* 1.3 78.5 - - - +
51C SER* 1.3 58.6 + - - +
53C GLU* 3.4 18.7 + - - +
54C ALA* 3.0 27.9 + - - +
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Residues in contact with SER 51 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48C THR 5.0 2.1 + - - -
49C PHE 3.3 0.6 - - - -
50C ASP* 1.3 77.0 - - - +
52C PHE* 1.3 62.8 + - - +
54C ALA* 3.2 5.8 + - - +
55C GLN* 2.9 48.7 + - - +
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Residues in contact with PHE 52 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C GLN* 3.9 3.8 - - - +
49C PHE* 3.3 38.2 + + + +
51C SER* 1.3 78.8 - - - +
53C GLU* 1.3 58.8 + - - +
55C GLN* 3.9 10.9 - - - +
56C PHE* 2.8 32.7 + - - +
69E LEU* 3.6 21.8 - - + +
72E ASP* 3.8 29.2 - - + -
73E ILE* 3.7 28.9 - - + +
76E GLN* 3.6 39.5 - - + -
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Residues in contact with GLU 53 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C GLN* 3.9 13.2 - - - +
41C ASP* 3.6 30.3 - - - +
49C PHE* 2.9 18.6 + - + +
50C ASP* 3.5 20.2 - - - +
51C SER 3.2 0.2 - - - -
52C PHE* 1.3 76.9 - - - +
54C ALA* 1.3 62.7 + - - +
56C PHE* 3.4 0.9 + - - +
57C ASN* 3.0 46.3 + - - +
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Residues in contact with ALA 54 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50C ASP 3.0 16.1 + - - +
51C SER* 3.7 6.1 - - - +
53C GLU* 1.3 77.7 - - - +
55C GLN* 1.4 59.6 + - + +
57C ASN* 3.3 7.6 + - - +
58C GLU* 2.9 30.2 + - - +
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Residues in contact with GLN 55 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C SER* 2.9 42.9 + - - +
52C PHE* 3.9 11.8 + - - +
54C ALA* 1.4 74.1 - - + +
56C PHE* 1.3 66.7 + - - +
58C GLU* 3.2 8.1 + - - +
59C LEU* 3.0 33.0 + - + +
69E LEU* 3.8 29.7 - - + +
72E ASP* 6.0 0.2 + - - -
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Residues in contact with PHE 56 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C LEU* 4.1 12.3 - - + -
33C LEU* 3.9 9.9 - - + -
34C THR* 3.8 35.7 - - + -
37C GLN* 3.4 44.9 - - + +
52C PHE 2.8 17.9 + - - +
53C GLU 3.8 1.8 - - - +
55C GLN* 1.3 75.3 - - - +
57C ASN* 1.3 68.5 + - - +
59C LEU* 3.2 1.8 + - - +
60C SER* 2.8 41.1 + - - -
19E TYR* 4.8 0.4 - + - -
66E PHE* 3.7 23.2 - + - -
69E LEU* 3.6 13.2 - - + +
70E LEU* 4.0 16.6 - - + -
73E ILE* 4.6 2.7 - - + -
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Residues in contact with ASN 57 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C GLN* 5.5 1.4 - - - +
53C GLU* 3.0 40.4 + - - +
54C ALA* 3.7 6.5 - - - +
56C PHE* 1.3 88.0 - - - +
58C GLU* 1.3 58.4 + - - +
60C SER* 4.1 5.0 - - - -
61C PRO* 3.1 24.3 - - - +
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Residues in contact with GLU 58 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54C ALA 2.9 18.0 + - - +
55C GLN* 3.6 7.4 - - - +
57C ASN* 1.3 79.5 - - - +
59C LEU* 1.3 66.7 + - + +
61C PRO* 3.5 11.1 - - - +
62C LYS* 4.2 9.4 - - - +
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Residues in contact with LEU 59 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55C GLN* 3.0 24.1 + - + +
56C PHE 4.0 1.3 - - - +
58C GLU* 1.3 84.6 - - + +
60C SER* 1.3 56.7 + - - +
61C PRO 3.3 0.4 - - - -
62C LYS* 2.9 29.8 + - + +
63C ILE* 3.1 13.1 + - - +
62E LYS* 3.9 36.6 - - + +
65E GLU* 4.0 24.0 - - + +
66E PHE* 3.9 39.5 - - + +
69E LEU* 4.1 14.8 - - + -
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Residues in contact with SER 60 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C LEU* 3.6 31.5 - - - +
34C THR* 4.6 2.9 + - - -
56C PHE* 2.8 28.6 + - - -
57C ASN* 4.1 5.4 - - - -
59C LEU* 1.3 73.3 - - - +
61C PRO* 1.3 68.7 - - - +
63C ILE* 3.0 9.1 + - - +
64C THR* 3.0 22.6 + - - -
66E PHE* 4.9 1.5 - - - -
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Residues in contact with PRO 61 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57C ASN 3.1 20.2 - - - +
58C GLU 3.5 9.0 - - - +
59C LEU 3.5 4.0 - - - -
60C SER* 1.3 92.0 - - - +
62C LYS* 1.3 60.1 + - + +
64C THR* 3.3 10.3 + - - +
65C GLU* 2.9 27.0 + - - +
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Residues in contact with LYS 62 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C GLU 4.2 12.6 - - - +
59C LEU* 2.9 16.2 + - + +
61C PRO* 1.3 76.6 - - + +
63C ILE* 1.3 63.1 + - + +
65C GLU* 3.3 8.0 + - - +
66C PHE* 2.9 28.1 + - - +
59E LEU* 3.9 26.6 - - + +
62E LYS* 4.0 43.8 - - + +
63E ILE* 4.3 1.0 - - - +
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Residues in contact with ILE 63 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C VAL* 3.3 27.0 - - + +
30C LEU* 4.1 23.8 - - + -
59C LEU* 3.4 14.8 - - + +
60C SER* 3.0 7.4 + - - +
62C LYS* 1.3 74.6 - - + +
64C THR* 1.3 65.8 + - - +
66C PHE* 3.1 4.8 + - - +
67C ALA* 2.9 23.6 + - - +
26E VAL* 5.8 2.2 - - + -
62E LYS 4.3 2.9 - - - +
63E ILE* 3.6 27.4 - - + -
66E PHE* 3.5 55.6 - - + -
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Residues in contact with THR 64 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C LEU* 3.3 22.4 - - - +
60C SER* 3.0 10.2 + - - -
61C PRO* 3.5 12.2 - - - +
63C ILE* 1.3 77.4 - - - +
65C GLU* 1.3 62.3 + - - +
67C ALA* 3.3 7.6 + - - +
68C GLN* 2.9 26.7 + - + +
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Residues in contact with GLU 65 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C PRO 2.9 15.6 + - - +
62C LYS* 3.7 12.1 - - - +
63C ILE 3.3 0.2 - - - -
64C THR* 1.3 76.7 - - - +
66C PHE* 1.3 59.1 + - - +
68C GLN* 3.2 12.4 + - - +
69C LEU* 2.8 37.9 + - - +
55E GLN* 4.6 9.4 - - - +
59E LEU* 3.5 25.1 - - + -
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Residues in contact with PHE 66 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C VAL* 4.2 20.4 - - + -
62C LYS 2.9 16.6 + - - +
63C ILE 3.1 5.1 + - - +
65C GLU* 1.3 78.3 - - - +
67C ALA* 1.3 63.1 + - - +
69C LEU* 3.2 7.0 + - + +
70C LEU* 3.0 57.9 + - + +
26E VAL 5.8 0.2 - - - -
29E VAL* 4.4 8.1 - - + -
30E LEU* 3.9 24.9 - - + -
33E LEU* 5.3 0.9 - - + -
56E PHE* 3.8 31.0 - + - -
59E LEU* 3.8 22.6 - - + +
60E SER 5.3 0.2 - - - -
63E ILE* 3.5 40.8 - - + -
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Residues in contact with ALA 67 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C SER* 2.7 39.5 + - - +
26C VAL* 4.1 11.7 - - + -
27C THR* 3.3 26.2 - - - +
63C ILE 2.9 13.0 + - - +
64C THR* 3.7 9.9 - - - +
66C PHE* 1.3 78.1 - - - +
68C GLN* 1.3 61.4 + - - +
70C LEU* 3.4 1.9 + - - -
71C GLU* 3.1 11.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 68 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64C THR* 2.9 21.1 + - + +
65C GLU* 3.6 18.2 - - - +
67C ALA* 1.3 77.4 - - - +
69C LEU* 1.3 55.9 + - - +
71C GLU* 3.3 18.5 + - - +
72C ASP* 2.9 30.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 69 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65C GLU* 2.8 28.8 + - - +
66C PHE* 3.5 9.4 - - + +
68C GLN* 1.3 73.6 - - - +
70C LEU* 1.4 58.0 + - + +
72C ASP* 3.1 6.5 + - + +
73C ILE* 2.9 39.1 + - + +
52E PHE* 3.7 26.2 - - + +
55E GLN* 3.5 34.3 - - + +
56E PHE* 3.6 45.3 - - + +
59E LEU* 4.1 10.5 - - + -
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Residues in contact with LEU 70 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C TYR* 3.4 37.0 - - + +
22C GLY 3.9 5.2 - - - +
23C SER* 3.8 20.4 - - - +
26C VAL* 4.6 1.3 - - + -
66C PHE* 3.0 57.8 + - + +
67C ALA 3.8 3.8 - - - +
69C LEU* 1.4 78.0 - - + +
71C GLU* 1.3 62.3 + - - +
73C ILE* 3.3 2.1 + - + +
74C ASN* 3.0 18.4 + - - +
29E VAL* 4.0 2.7 - - + -
33E LEU* 3.6 32.8 - - + -
56E PHE* 3.9 17.9 - - + -
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Residues in contact with GLU 71 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C TYR 5.1 0.2 - - - -
20C THR* 2.7 28.6 + - - -
23C SER* 3.7 17.1 + - - +
24C GLN* 5.1 1.7 + - - +
67C ALA 3.1 10.7 + - - +
68C GLN* 3.7 17.9 - - - +
70C LEU* 1.3 74.6 - - - +
72C ASP* 1.3 64.9 + - - +
74C ASN* 3.0 15.0 + - - +
75C GLN* 3.0 52.0 + - + +
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Residues in contact with ASP 72 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C GLN* 2.9 19.0 + - + +
69C LEU* 3.4 9.1 - - - +
71C GLU* 1.3 76.2 - - - +
73C ILE* 1.4 57.0 + - - +
75C GLN* 3.2 6.1 + - - +
76C GLN* 2.9 55.1 + - - +
98C SO4 4.3 7.1 + - - -
52E PHE* 3.2 25.7 - - + -
55E GLN* 5.1 4.0 + - - +
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Residues in contact with ILE 73 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C TYR* 3.7 32.5 - - + -
69C LEU* 2.9 38.4 + - + +
70C LEU* 3.7 5.2 - - - +
72C ASP* 1.4 72.0 - - - +
74C ASN* 1.3 66.2 + - - +
76C GLN* 3.1 7.5 + - - +
77C LEU* 2.9 39.1 + - + +
37E GLN* 3.7 23.6 - - - +
49E PHE* 4.3 16.2 - - + -
52E PHE* 3.6 28.3 - - + +
56E PHE* 4.8 2.5 - - + -
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Residues in contact with ASN 74 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C ALA* 3.1 44.2 - - - +
17C GLN* 4.6 0.2 - - - -
19C TYR* 4.1 1.3 - - - +
20C THR* 3.6 28.1 + - - +
70C LEU 3.0 13.5 + - - +
71C GLU* 3.0 30.7 + - - +
73C ILE* 1.3 76.9 - - - +
75C GLN* 1.3 75.9 + - - +
77C LEU* 3.3 0.7 + - - -
78C LEU* 3.0 40.7 + - - +
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Residues in contact with GLN 75 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71C GLU* 3.0 42.9 + - + +
72C ASP* 3.2 9.2 + - - +
74C ASN* 1.3 86.1 - - - +
76C GLN* 1.3 66.1 + - - +
78C LEU* 3.4 12.9 + - - +
79C LYS* 3.0 47.7 + - - +
98C SO4 3.8 20.6 + - - +
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Residues in contact with GLN 76 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72C ASP* 2.9 40.9 + - - +
73C ILE* 3.7 6.7 - - - +
75C GLN* 1.3 76.4 - - - +
77C LEU* 1.3 62.0 + - + +
79C LYS* 3.3 7.0 + - - +
80C VAL* 2.9 39.4 + - + +
98C SO4 2.9 33.0 + - - -
44E TRP* 6.4 2.5 - - + -
49E PHE* 5.6 4.7 - - + -
52E PHE* 3.5 32.6 - - + -
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Residues in contact with LEU 77 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12C LEU* 3.9 36.9 - - + +
15C SER* 4.2 7.0 - - - -
16C ALA* 3.9 26.2 - - + +
19C TYR* 4.2 4.7 - - + -
73C ILE* 2.9 35.4 + - + +
74C ASN 3.8 2.9 - - - +
76C GLN* 1.3 78.8 - - + +
78C LEU* 1.3 56.8 + - - +
80C VAL* 3.5 5.0 + - + +
81C ALA* 2.9 30.5 + - - +
40E ILE* 4.1 26.0 - - + -
44E TRP* 4.6 19.3 - - + -
49E PHE* 4.9 7.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU 78 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13C ARG* 4.1 24.5 + - + +
16C ALA* 3.7 17.3 - - + -
74C ASN* 3.0 42.7 + - - +
75C GLN* 3.8 14.8 - - - +
77C LEU* 1.3 75.2 - - - +
79C LYS* 1.3 64.8 + - + +
81C ALA* 3.3 5.5 + - - +
82C ASP* 3.0 30.0 + - - +
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Residues in contact with LYS 79 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C GLN* 3.0 42.2 + - - +
76C GLN* 3.8 7.9 - - - +
78C LEU* 1.3 79.5 - - + +
80C VAL* 1.3 63.0 + - + +
82C ASP* 3.3 9.1 + - - +
83C ILE* 3.0 35.3 + - + +
98C SO4 3.4 32.4 + - - +
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Residues in contact with VAL 80 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5C ILE* 3.9 18.8 - - + -
12C LEU* 4.1 10.1 - - + -
76C GLN* 2.9 26.7 + - + +
77C LEU* 3.9 5.8 - - + +
79C LYS* 1.3 75.5 - - + +
81C ALA* 1.3 65.5 + - - +
83C ILE* 3.1 12.0 + - + +
84C ILE* 2.9 43.2 + - + +
44E TRP* 4.6 17.7 - - + -
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Residues in contact with ALA 81 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C PRO* 3.6 31.5 - - + +
12C LEU* 3.9 15.7 - - + +
13C ARG* 3.7 22.4 - - + +
77C LEU 2.9 18.6 + - - +
78C LEU 3.6 4.9 - - - +
80C VAL* 1.3 77.5 - - - +
82C ASP* 1.4 56.6 + - - +
84C ILE* 3.3 1.0 + - - +
85C GLU* 2.9 31.4 + - - +
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Residues in contact with ASP 82 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13C ARG* 2.8 25.0 + - - +
78C LEU* 3.0 19.3 + - - +
79C LYS* 3.6 11.3 - - - +
81C ALA* 1.4 75.7 - - - +
83C ILE* 1.3 64.6 + - + +
85C GLU* 3.4 4.4 + - - +
86C GLN* 3.0 25.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE 83 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2C MET* 6.5 0.7 - - - -
79C LYS* 3.0 23.9 + - + +
80C VAL* 3.1 12.3 + - + +
82C ASP* 1.3 78.0 - - + +
84C ILE* 1.3 63.2 + - + +
86C GLN* 3.4 5.9 + - - +
87C THR* 2.7 32.2 + - - +
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Residues in contact with ILE 84 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1C ALA* 5.6 1.1 - - + +
2C MET* 4.1 29.4 - - + -
5C ILE* 4.1 23.3 - - + -
7C LEU 4.7 3.4 - - - +
9C PRO* 3.7 21.5 - - + -
12C LEU* 3.9 16.2 - - + -
80C VAL* 2.9 38.3 + - + +
81C ALA 3.8 2.9 - - - +
83C ILE* 1.3 81.5 - - + +
85C GLU* 1.3 62.7 + - - +
87C THR* 3.0 17.4 + - - -
88C ASP* 3.0 19.1 + - - +
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Residues in contact with GLU 85 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C PRO* 3.8 14.3 - - + +
10C GLU* 4.4 2.6 - - - +
13C ARG* 2.9 38.3 + - - +
81C ALA 2.9 18.1 + - - +
82C ASP* 3.8 5.5 - - - +
83C ILE 3.4 0.2 - - - -
84C ILE* 1.3 76.2 - - - +
86C GLN* 1.3 61.6 + - - +
88C ASP* 3.2 11.9 + - + +
89C ALA* 3.1 20.9 + - + +
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Residues in contact with GLN 86 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82C ASP 3.0 17.2 + - - +
83C ILE* 3.8 6.3 - - - +
85C GLU* 1.3 74.0 - - - +
87C THR* 1.3 61.2 + - - +
89C ALA* 3.3 14.8 + - - +
90C ASP* 2.8 60.2 + - - +
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Residues in contact with THR 87 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2C MET* 3.9 33.3 - - + +
83C ILE* 2.7 26.6 + - - +
84C ILE* 3.0 12.7 + - - -
86C GLN* 1.3 74.4 - - - +
88C ASP* 1.3 65.4 + - - +
90C ASP* 3.3 6.2 + - + +
91C ILE* 2.9 46.8 + - + +
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Residues in contact with ASP 88 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2C MET* 4.7 9.2 - - - +
9C PRO* 4.6 11.8 - - - +
84C ILE* 3.0 23.6 + - - +
85C GLU* 3.4 14.3 - - + +
87C THR* 1.3 77.0 - - - +
89C ALA* 1.3 56.1 + - - +
91C ILE* 3.9 7.6 - - - +
92C ALA* 3.0 29.7 + - - +
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Residues in contact with ALA 89 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85C GLU* 3.1 10.4 + - + +
86C GLN* 3.6 21.8 - - - +
87C THR 3.2 0.2 - - - -
88C ASP* 1.3 79.5 - - - +
90C ASP* 1.3 58.4 + - - +
92C ALA* 3.2 7.2 + - - +
93C SER* 3.0 30.5 + - - -
----------------------------------------------------------
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Residues in contact with ASP 90 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86C GLN* 2.8 53.1 + - - +
87C THR* 3.8 7.0 - - + +
89C ALA* 1.3 71.5 - - - +
91C ILE* 1.3 61.8 + - + +
93C SER* 4.6 2.6 - - - -
94C GLN* 2.9 59.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE 91 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2C MET* 5.5 4.3 - - + -
87C THR* 2.9 39.6 + - + +
88C ASP* 3.9 7.0 - - - +
90C ASP* 1.3 75.2 - - + +
92C ALA* 1.3 63.9 + - - +
95C ILE* 3.1 49.9 + - + +
----------------------------------------------------------
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Residues in contact with ALA 92 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88C ASP 3.0 18.3 + - - +
89C ALA* 3.6 8.5 - - - +
91C ILE* 1.3 81.0 - - - +
93C SER* 1.3 58.9 + - - +
95C ILE 4.2 7.2 - - - +
----------------------------------------------------------
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Residues in contact with SER 93 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89C ALA 3.0 16.5 + - - -
90C ASP* 4.0 4.0 - - - -
91C ILE 3.2 0.2 - - - -
92C ALA* 1.3 79.5 - - - +
94C GLN* 1.3 67.5 + - - +
95C ILE 4.8 0.8 - - - +
----------------------------------------------------------
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Residues in contact with GLN 94 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90C ASP* 2.9 46.6 + - - +
93C SER* 1.3 85.7 - - - +
95C ILE* 1.3 73.2 + - + +
96C SER* 4.0 4.5 + - - -
----------------------------------------------------------
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Residues in contact with ILE 95 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91C ILE* 3.1 46.2 + - + +
92C ALA* 4.2 8.7 - - - +
93C SER 4.8 0.7 - - - +
94C GLN* 1.3 88.3 + - + +
96C SER* 1.4 68.3 + - - +
97C GLY* 4.1 4.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il