Contacts of the helix formed by residues 49 - 97 (chain E) in PDB entry 3GWK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 49 (chain E).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73C ILE* 4.3 20.6 - - + -
76C GLN* 5.6 5.2 - - + -
77C LEU* 4.9 6.5 - - + -
37E GLN* 3.8 33.9 - - - -
40E ILE* 3.7 31.2 - - + -
41E ASP* 5.5 4.7 - - + -
44E TRP* 3.8 39.8 - + + +
46E GLY 4.9 1.2 + - - -
47E SER 3.2 0.6 - - - -
48E THR* 1.3 76.3 - - - +
50E ASP* 1.3 65.6 + - - +
51E SER 3.1 3.7 + - - -
52E PHE* 3.2 40.2 + + + +
53E GLU* 3.0 27.0 + - + +
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Residues in contact with ASP 50 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41E ASP* 5.6 1.7 - - - +
46E GLY 3.8 6.4 - - - +
47E SER* 3.0 43.5 + - - +
48E THR 3.2 0.2 - - - -
49E PHE* 1.3 78.4 - - - +
51E SER* 1.3 57.8 + - - +
53E GLU* 3.4 21.4 + - - +
54E ALA* 2.8 29.1 + - - +
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Residues in contact with SER 51 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48E THR 4.5 4.6 + - - -
49E PHE 3.2 0.8 - - - -
50E ASP* 1.3 79.7 - - - +
52E PHE* 1.3 61.6 + - - +
54E ALA* 3.2 7.1 + - - +
55E GLN* 2.9 47.8 + - - +
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Residues in contact with PHE 52 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69C LEU* 3.7 14.1 - - + +
72C ASP* 3.2 32.8 - - + -
73C ILE* 3.6 23.2 - - + +
76C GLN* 3.5 32.5 - - + -
37E GLN* 4.0 2.8 + - - -
48E THR 5.4 2.2 - - - -
49E PHE* 3.2 46.7 + + + +
51E SER* 1.3 82.2 - - - +
53E GLU* 1.3 60.9 + - - +
55E GLN* 3.7 13.8 - - - +
56E PHE* 3.0 25.6 + - - +
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Residues in contact with GLU 53 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37E GLN* 3.9 15.8 - - + +
41E ASP* 4.1 26.3 - - - +
49E PHE* 3.0 18.3 + - + +
50E ASP* 3.5 26.0 - - - +
52E PHE* 1.3 77.7 - - - +
54E ALA* 1.3 57.3 + - - +
56E PHE* 3.3 1.4 + - - +
57E ASN* 3.0 52.5 + - - +
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Residues in contact with ALA 54 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50E ASP 2.8 20.5 + - - +
51E SER* 3.2 7.6 + - - +
53E GLU* 1.3 74.0 - - - +
55E GLN* 1.3 64.2 + - + +
57E ASN* 3.3 7.0 + - - +
58E GLU* 2.9 27.4 + - - +
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Residues in contact with GLN 55 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65C GLU* 4.6 9.7 - - - +
69C LEU* 3.5 26.9 - - + +
72C ASP* 5.1 2.8 - - - +
51E SER* 2.9 42.7 + - - +
52E PHE* 3.7 20.6 - - - +
53E GLU 3.3 0.2 - - - -
54E ALA* 1.3 77.0 - - + +
56E PHE* 1.3 63.3 + - - +
58E GLU* 3.4 5.6 + - - +
59E LEU* 3.2 30.6 + - + +
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Residues in contact with PHE 56 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C TYR* 4.8 0.7 - + - -
66C PHE* 3.8 21.5 - + - -
69C LEU* 3.6 13.0 - - + +
70C LEU* 3.9 19.5 - - + -
73C ILE* 4.8 2.7 - - + -
30E LEU* 4.1 18.2 - - + -
33E LEU* 3.7 11.7 - - + -
34E THR* 3.6 44.6 - - + -
37E GLN* 3.5 41.1 - - + +
52E PHE 3.0 10.5 + - - +
53E GLU 3.6 2.0 - - - +
55E GLN* 1.3 77.4 - - - +
57E ASN* 1.3 68.5 + - - +
59E LEU* 3.2 3.7 + - - +
60E SER* 2.9 30.9 + - - -
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Residues in contact with ASN 57 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37E GLN* 5.6 1.6 + - - +
53E GLU* 3.0 43.6 + - - +
54E ALA* 3.3 7.6 + - - +
56E PHE* 1.3 87.8 - - - +
58E GLU* 1.3 60.3 + - - +
60E SER* 3.9 5.6 - - - -
61E PRO* 3.2 20.1 - - - +
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Residues in contact with GLU 58 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54E ALA 2.9 17.5 + - - +
55E GLN* 3.7 6.7 - - - +
57E ASN* 1.3 77.4 - - - +
59E LEU* 1.3 66.9 + - + +
61E PRO* 3.5 12.1 - - - +
62E LYS* 4.4 9.4 - - - +
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Residues in contact with LEU 59 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C LYS* 3.9 49.8 - - + +
65C GLU* 3.5 28.9 - - + -
66C PHE* 3.8 30.7 - - + -
69C LEU* 4.1 12.8 - - + -
55E GLN* 3.2 18.8 + - + +
56E PHE 3.2 3.1 + - - +
58E GLU* 1.3 85.0 - - + +
60E SER* 1.3 65.9 + - - +
62E LYS* 2.8 18.8 + - - +
63E ILE* 3.1 13.1 + - + +
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Residues in contact with SER 60 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66C PHE* 5.3 0.9 - - - -
30E LEU* 3.8 24.6 - - - +
34E THR* 4.8 3.3 + - - -
56E PHE* 2.9 24.8 + - - -
57E ASN* 3.9 7.2 - - - -
59E LEU* 1.3 75.0 - - - +
61E PRO* 1.4 71.1 - - - +
63E ILE* 2.9 21.2 + - - +
64E THR* 3.0 14.6 + - - -
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Residues in contact with PRO 61 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57E ASN 3.2 17.7 - - - +
58E GLU* 3.5 7.6 - - - +
59E LEU 3.5 3.8 - - - -
60E SER* 1.4 93.7 - - - +
62E LYS* 1.3 58.3 + - + +
64E THR* 3.4 9.5 + - - +
65E GLU* 2.9 41.4 + - - +
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Residues in contact with LYS 62 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59C LEU* 3.9 15.0 - - + +
62C LYS* 4.0 43.5 - - + +
63C ILE* 4.3 0.8 - - - +
58E GLU 4.4 11.0 - - - +
59E LEU* 2.8 11.9 + - + +
61E PRO* 1.3 76.0 - - + +
63E ILE* 1.3 64.3 + - + +
65E GLU* 3.3 28.7 + - - +
66E PHE* 2.9 28.4 + - - +
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Residues in contact with ILE 63 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C VAL* 6.1 0.4 - - + -
62C LYS 4.3 4.7 - - - +
63C ILE* 3.6 23.3 - - + -
66C PHE* 3.5 55.9 - - + -
26E VAL* 3.4 26.8 - - + +
30E LEU* 4.1 18.6 - - + -
59E LEU* 3.3 20.6 - - + +
60E SER* 2.9 10.7 + - - +
62E LYS* 1.3 79.3 - - + +
64E THR* 1.3 56.4 + - - +
66E PHE* 3.2 1.9 + - - +
67E ALA* 2.9 28.8 + - - +
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Residues in contact with THR 64 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27E THR* 6.0 0.2 - - - -
30E LEU* 3.4 22.1 - - - +
60E SER* 3.0 9.5 + - - -
61E PRO* 3.5 11.7 - - - +
63E ILE* 1.3 75.8 - - - +
65E GLU* 1.3 63.4 + - + +
67E ALA* 3.3 7.8 + - - +
68E GLN* 3.0 22.8 + - + +
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Residues in contact with GLU 65 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59C LEU* 4.0 22.6 - - + +
61E PRO* 2.9 29.5 + - - +
62E LYS* 3.5 26.9 + - - +
63E ILE 3.2 0.2 - - - -
64E THR* 1.3 76.9 - - + +
66E PHE* 1.3 58.3 + - - +
68E GLN* 3.2 7.2 + - - +
69E LEU* 2.8 29.8 + - - +
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Residues in contact with PHE 66 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C VAL* 4.8 5.6 - - + -
30C LEU* 3.8 24.9 - - + -
33C LEU* 5.3 1.8 - - + -
56C PHE* 3.7 30.5 - + - -
59C LEU* 3.9 25.7 - - + +
60C SER 4.9 1.8 - - - -
63C ILE* 3.5 41.5 - - + -
26E VAL* 4.5 18.6 - - + -
62E LYS 2.9 17.4 + - - +
63E ILE 3.2 3.1 + - - +
65E GLU* 1.3 73.5 - - - +
67E ALA* 1.3 66.7 + - - +
69E LEU* 3.1 6.9 + - + +
70E LEU* 3.0 56.4 + - + +
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Residues in contact with ALA 67 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23E SER* 2.8 37.7 + - - +
26E VAL* 4.3 9.2 - - + -
27E THR* 3.4 25.8 - - - +
63E ILE 2.9 16.2 + - - +
64E THR* 3.3 7.6 + - - +
66E PHE* 1.3 77.2 - - - +
68E GLN* 1.3 62.6 + - - +
70E LEU* 3.4 4.1 + - - -
71E GLU* 3.2 11.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 68 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64E THR* 3.0 15.3 + - + +
65E GLU* 3.6 10.5 - - - +
66E PHE 3.2 0.2 - - - -
67E ALA* 1.3 74.2 - - - +
69E LEU* 1.3 60.6 + - - +
71E GLU* 3.1 13.9 + - - +
72E ASP* 2.8 61.9 + - - +
75E GLN* 5.7 1.0 + - - -
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Residues in contact with LEU 69 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52C PHE* 3.6 33.4 - - + -
55C GLN* 3.8 29.4 - - + +
56C PHE* 3.6 45.3 - - + +
59C LEU* 4.1 11.9 - - + -
65E GLU 2.8 13.4 + - - +
66E PHE* 3.5 13.2 - - + +
68E GLN* 1.3 75.3 - - - +
70E LEU* 1.3 58.9 + - + +
72E ASP* 3.1 9.0 + - + +
73E ILE* 2.9 38.8 + - + +
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Residues in contact with LEU 70 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C VAL* 4.4 1.3 - - + -
33C LEU* 3.5 32.1 - - + -
56C PHE* 4.0 16.6 - - + -
19E TYR* 3.4 37.6 - - + +
22E GLY 3.9 4.5 - - - +
23E SER* 3.7 23.3 - - - +
26E VAL* 4.8 0.9 - - + -
66E PHE* 3.0 52.7 + - + +
67E ALA* 3.6 7.4 - - - +
69E LEU* 1.3 77.4 - - + +
71E GLU* 1.3 62.5 + - - +
73E ILE* 3.4 3.1 + - + +
74E ASN* 3.0 19.1 + - - +
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Residues in contact with GLU 71 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20E THR* 2.7 28.6 + - - -
23E SER* 4.1 9.9 + - - +
67E ALA 3.2 12.2 + - - +
68E GLN* 3.1 20.9 + - - +
70E LEU* 1.3 77.9 - - - +
72E ASP* 1.3 62.8 + - - +
74E ASN* 3.0 26.7 + - - +
75E GLN* 3.0 44.5 + - - +
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Residues in contact with ASP 72 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52C PHE* 4.0 20.6 - - + -
55C GLN* 6.0 0.2 + - - -
68E GLN* 2.8 46.0 + - - +
69E LEU* 3.5 11.8 - - - +
71E GLU* 1.3 78.3 - - - +
73E ILE* 1.4 61.1 + - - +
75E GLN* 3.3 14.2 + - - +
76E GLN* 3.0 29.5 + - + +
----------------------------------------------------------
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Residues in contact with ILE 73 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C GLN* 3.8 24.0 - - - +
40C ILE* 5.1 0.7 - - + -
49C PHE* 4.2 9.6 - - + -
52C PHE* 3.7 36.8 - - + +
56C PHE* 4.6 3.8 - - + -
19E TYR* 3.7 31.6 - - + -
69E LEU* 2.9 39.5 + - + +
70E LEU* 3.7 5.2 - - - +
72E ASP* 1.4 72.5 - - - +
74E ASN* 1.3 67.5 + - - +
76E GLN* 3.2 1.7 + - - +
77E LEU* 2.9 41.4 + - + +
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Residues in contact with ASN 74 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16E ALA* 3.2 41.6 - - - +
17E GLN* 4.8 0.2 - - - -
19E TYR* 4.2 3.3 - - + +
20E THR* 3.7 25.0 - - - +
70E LEU 3.0 14.4 + - - +
71E GLU* 3.0 31.6 + - - +
73E ILE* 1.3 76.2 - - - +
75E GLN* 1.3 64.5 + - - +
77E LEU* 3.3 1.6 + - - +
78E LEU* 3.0 45.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 75 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68E GLN* 5.7 0.6 + - - -
71E GLU* 3.0 46.1 + - - +
72E ASP* 3.6 13.1 + - - +
73E ILE 3.2 0.2 - - - -
74E ASN* 1.3 80.4 - - - +
76E GLN* 1.3 66.5 + - - +
78E LEU* 3.4 8.5 + - + +
79E LYS* 3.1 32.7 + - + +
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Residues in contact with GLN 76 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49C PHE* 3.8 22.6 - - + -
52C PHE* 3.6 19.5 - - + -
72E ASP* 3.0 21.8 + - + +
73E ILE 4.0 0.2 - - - +
75E GLN* 1.3 80.6 - - - +
77E LEU* 1.3 60.5 + - - +
79E LYS* 3.2 33.0 + - - +
80E VAL* 2.9 38.4 + - + +
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Residues in contact with LEU 77 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C ILE* 4.1 13.7 - - + -
44C TRP* 4.6 5.4 - - + -
49C PHE* 3.7 24.5 - - + -
12E LEU* 3.8 36.8 - - + +
15E SER* 4.1 2.9 - - - +
16E ALA* 3.8 34.1 - - + +
19E TYR* 3.9 12.1 - - + -
73E ILE* 2.9 36.4 + - + +
74E ASN 3.7 4.0 - - - +
76E GLN* 1.3 76.8 - - - +
78E LEU* 1.3 57.3 + - - +
80E VAL* 3.4 4.0 + - + +
81E ALA* 2.9 30.4 + - - +
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Residues in contact with LEU 78 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13E ARG* 4.1 24.9 + - + +
16E ALA* 3.8 18.4 - - + -
74E ASN* 3.0 41.6 + - - +
75E GLN* 3.7 7.9 - - + +
77E LEU* 1.3 75.5 - - - +
79E LYS* 1.3 63.5 - - + +
81E ALA* 3.4 5.1 + - - +
82E ASP* 3.1 29.1 + - - +
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Residues in contact with LYS 79 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75E GLN* 3.1 17.3 + - + +
76E GLN* 3.2 38.8 + - - +
78E LEU* 1.3 77.9 - - + +
80E VAL* 1.3 63.3 + - + +
82E ASP* 3.2 8.5 + - - +
83E ILE* 3.1 33.0 + - + +
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Residues in contact with VAL 80 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44C TRP* 3.8 38.4 - - + -
48C THR* 5.4 2.9 - - + -
49C PHE* 4.7 3.8 - - + -
5E ILE* 4.8 3.1 - - + -
12E LEU* 4.8 5.6 - - + -
76E GLN* 2.9 22.7 + - + +
77E LEU* 3.9 4.5 - - - +
79E LYS* 1.3 77.1 - - + +
81E ALA* 1.3 63.1 + - - +
83E ILE* 3.2 15.0 + - + +
84E ILE* 2.9 45.3 + - + +
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Residues in contact with ALA 81 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9E PRO* 3.6 25.1 - - + +
12E LEU* 4.0 14.9 - - + +
13E ARG* 3.8 29.2 - - + +
77E LEU 2.9 17.9 + - - +
78E LEU 3.6 5.2 - - - +
79E LYS 3.3 0.2 - - - -
80E VAL* 1.3 78.4 - - - +
82E ASP* 1.4 56.8 + - - +
84E ILE* 4.6 1.3 - - - -
85E GLU* 2.8 30.8 + - - +
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Residues in contact with ASP 82 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13E ARG* 2.9 23.3 + - - +
78E LEU* 3.1 18.9 + - - +
79E LYS* 3.7 10.6 - - - +
80E VAL 3.2 0.2 - - - -
81E ALA* 1.4 75.0 - - - +
83E ILE* 1.3 66.1 + - + +
85E GLU* 3.4 5.5 + - - +
86E GLN* 3.1 23.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 83 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79E LYS* 3.1 22.7 + - + +
80E VAL* 3.6 16.4 - - + +
82E ASP* 1.3 77.5 - - + +
84E ILE* 1.3 69.0 + - + +
86E GLN* 3.3 5.6 + - - +
87E THR* 3.1 25.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 84 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5E ILE* 3.7 35.9 - - + +
7E LEU 4.6 3.4 - - - +
9E PRO* 3.6 13.9 - - + -
12E LEU* 3.6 22.7 - - + -
80E VAL* 2.9 37.3 + - + +
81E ALA 3.8 3.1 - - - +
83E ILE* 1.3 80.9 - - + +
85E GLU* 1.3 58.1 + - - +
87E THR* 3.1 8.0 + - + -
88E ASP* 2.8 48.6 + - - +
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Residues in contact with GLU 85 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9E PRO* 3.7 14.1 - - + +
13E ARG* 2.9 37.0 + - - +
81E ALA 2.8 19.2 + - - +
82E ASP* 3.8 7.4 - - - +
83E ILE 3.3 0.2 - - - -
84E ILE* 1.3 75.6 - - - +
86E GLN* 1.3 58.7 + - - +
88E ASP* 3.4 6.5 + - + +
89E ALA* 3.0 28.7 + - + +
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Residues in contact with GLN 86 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82E ASP 3.1 13.2 + - - +
83E ILE* 3.7 9.2 - - - +
84E ILE 3.2 0.2 - - - -
85E GLU* 1.3 74.1 - - - +
87E THR* 1.3 60.3 + - - +
89E ALA* 3.2 10.0 + - - +
90E ASP* 2.9 66.8 + - - +
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Residues in contact with THR 87 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83E ILE* 3.1 19.2 + - - +
84E ILE* 3.1 12.3 + - + +
86E GLN* 1.3 78.8 - - - +
88E ASP* 1.3 61.1 + - - +
90E ASP* 3.2 9.1 + - - +
91E ILE* 2.9 49.6 + - + +
----------------------------------------------------------
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Residues in contact with ASP 88 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9E PRO* 3.7 16.3 - - - +
84E ILE* 2.8 41.0 + - - +
85E GLU* 3.6 6.5 - - + +
87E THR* 1.3 78.8 - - - +
89E ALA* 1.3 57.0 + - - +
91E ILE* 3.9 7.6 - - - +
92E ALA* 2.9 31.4 + - - +
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Residues in contact with ALA 89 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85E GLU* 3.0 15.6 + - + +
86E GLN* 3.5 14.4 - - - +
88E ASP* 1.3 75.8 - - - +
90E ASP* 1.3 61.3 + - - +
92E ALA* 3.7 5.7 - - - +
93E SER* 3.0 31.2 + - - -
----------------------------------------------------------
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Residues in contact with ASP 90 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86E GLN* 2.9 50.0 + - - +
87E THR* 3.5 8.0 - - - +
89E ALA* 1.3 77.4 - - - +
91E ILE* 1.3 57.6 + - + +
93E SER* 3.9 4.5 - - - -
94E GLN* 2.9 30.4 + - - +
----------------------------------------------------------
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Residues in contact with ILE 91 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87E THR* 2.9 37.8 + - + +
88E ASP* 4.0 8.1 - - - +
90E ASP* 1.3 75.5 - - + +
92E ALA* 1.3 66.9 + - - +
94E GLN* 3.2 6.5 + - - +
95E ILE* 3.0 36.9 + - + +
----------------------------------------------------------
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Residues in contact with ALA 92 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88E ASP 2.9 19.3 + - - +
89E ALA* 3.7 7.2 - - - +
91E ILE* 1.3 76.8 - - - +
93E SER* 1.3 58.3 + - - +
95E ILE* 3.9 3.9 - - - +
96E SER* 3.0 32.7 + - - -
----------------------------------------------------------
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Residues in contact with SER 93 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89E ALA 3.0 18.4 + - - -
90E ASP* 3.9 5.6 - - - -
92E ALA* 1.3 73.6 - - - +
94E GLN* 1.3 67.3 + - - +
96E SER* 3.5 7.0 + - - -
97E GLY* 3.0 23.6 + - - -
----------------------------------------------------------
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Residues in contact with GLN 94 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90E ASP 2.9 19.4 + - - +
91E ILE* 3.5 8.5 - - - +
93E SER* 1.3 79.9 - - - +
95E ILE* 1.3 71.9 + - + +
97E GLY* 3.6 11.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 95 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91E ILE* 3.0 31.3 + - + +
92E ALA* 4.1 3.6 - - - +
94E GLN* 1.3 86.2 - - + +
96E SER* 1.3 63.7 + - - +
97E GLY 3.5 2.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 96 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92E ALA 3.0 19.9 + - - -
93E SER* 3.5 9.0 + - - -
95E ILE* 1.3 78.2 - - - +
97E GLY* 1.3 65.4 + - - +
----------------------------------------------------------
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Residues in contact with GLY 97 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93E SER 3.0 17.8 + - - -
94E GLN 3.6 7.6 + - - +
95E ILE 3.4 3.9 - - - +
96E SER* 1.3 82.8 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il