Contacts of the helix formed by residues 767 - 824 (chain A) in PDB entry 3I5G
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 767 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A THR* 2.7 25.0 + - - -
93A PHE* 3.6 25.9 - - - -
765A LYS 3.3 0.6 + - - -
766A ALA* 1.3 70.3 - - - +
768A VAL* 1.3 65.2 + - - +
769A LEU 3.3 2.5 - - - -
770A GLY* 2.9 10.0 + - - -
771A MET* 3.0 13.3 + - - +
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Residues in contact with VAL 768 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
750A LEU* 3.5 32.1 - - + -
754A GLU* 3.6 38.8 - - + +
764A PHE* 4.0 22.9 - - + -
765A LYS* 3.6 21.0 + - + +
766A ALA 3.3 4.5 + - - +
767A GLY* 1.3 74.7 - - - +
769A LEU* 1.3 63.2 + - - +
771A MET* 3.0 10.6 + - + +
772A LEU* 3.0 28.8 + - + +
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Residues in contact with LEU 769 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A PRO* 4.9 0.5 - - - +
81A LYS* 5.1 6.5 - - - +
82A PHE* 4.0 26.4 - - + -
90A ASN 4.6 1.1 - - - +
92A THR* 3.5 12.0 + - - +
711A ASN* 3.4 34.5 - - + +
713A ILE* 4.2 14.6 - - + -
722A TYR* 3.6 28.0 - - + +
764A PHE* 3.5 33.4 - - + -
767A GLY 3.3 0.4 - - - -
768A VAL* 1.3 78.3 - - - +
770A GLY* 1.3 58.2 + - - +
772A LEU* 3.7 5.3 - - + +
773A GLU* 2.9 34.1 + - - +
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Residues in contact with GLY 770 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A PRO* 4.6 9.6 - - - +
92A THR* 3.0 23.8 + - - -
93A PHE* 4.2 15.9 - - - -
767A GLY 2.9 10.2 + - - -
769A LEU* 1.3 80.2 - - - +
771A MET* 1.3 62.7 + - - +
773A GLU* 4.1 1.6 - - - +
774A ASP* 3.5 18.0 + - - +
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Residues in contact with MET 771 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
748A LEU* 4.8 8.1 - - + +
750A LEU* 3.3 39.0 - - + -
767A GLY 3.0 9.9 + - - +
768A VAL* 3.3 11.7 - - + +
770A GLY* 1.3 77.3 - - - +
772A LEU* 1.3 78.1 + - + +
774A ASP* 2.9 19.1 + - - +
775A MET* 3.0 39.0 + - + +
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Residues in contact with LEU 772 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
718A PHE* 3.6 35.0 - - + -
722A TYR* 3.6 22.8 - - + +
725A LEU* 3.8 12.3 - - + +
745A LEU* 4.4 6.5 - - + -
748A LEU* 3.4 33.4 - - + -
764A PHE* 4.2 12.3 - - + -
768A VAL* 3.0 24.0 + - + +
769A LEU* 3.7 9.6 - - + +
771A MET* 1.3 88.5 - - + +
773A GLU* 1.3 63.4 + - - +
775A MET* 3.1 6.7 + - - +
776A ARG* 3.0 23.0 + - - +
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Residues in contact with GLU 773 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A PRO* 3.9 34.8 - - + -
81A LYS* 4.0 18.1 - - + +
82A PHE* 5.4 0.9 - - + -
721A ARG* 2.4 43.3 + - - +
722A TYR* 2.4 34.4 + - - -
769A LEU* 2.9 20.2 + - - +
770A GLY 4.1 1.8 - - - +
772A LEU* 1.3 73.9 - - - +
774A ASP* 1.3 57.0 + - - +
776A ARG* 3.3 9.8 + - - +
777A ASP* 3.1 28.8 + - - +
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Residues in contact with ASP 774 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A ASP* 4.6 2.6 - - - +
30A GLY* 3.9 27.0 + - - -
31A LYS* 3.9 30.6 - - - +
770A GLY 3.5 11.7 + - - +
771A MET* 2.9 13.2 + - - +
773A GLU* 1.3 78.2 - - - +
775A MET* 1.3 64.5 + - - +
777A ASP* 3.9 8.8 + - - +
778A GLU* 3.3 20.4 + - - +
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Residues in contact with MET 775 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
725A LEU* 3.9 14.8 - - + -
748A LEU* 3.3 44.2 - - + -
771A MET* 3.0 38.0 + - + +
772A LEU* 3.1 7.6 + - - +
774A ASP* 1.3 80.3 - - - +
776A ARG* 1.3 55.9 + - - +
778A GLU* 3.1 7.4 + - - +
779A ARG* 2.7 37.8 + - - +
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Residues in contact with ARG 776 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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720A GLN 5.6 1.0 + - - -
721A ARG* 3.0 78.9 + - - +
722A TYR* 4.2 9.2 - - + -
724A ILE* 4.0 18.5 - - + +
725A LEU* 3.8 11.6 - - + +
772A LEU 3.0 12.4 + - - +
773A GLU* 3.5 13.9 + - - +
775A MET* 1.3 77.7 - - - +
777A ASP* 1.3 62.3 + - - +
779A ARG* 3.9 1.2 - - - +
780A LEU* 2.8 41.3 + - + +
93C THR* 3.3 32.4 + - - +
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Residues in contact with ASP 777 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A PHE 4.3 13.9 - - - +
773A GLU 3.1 14.0 + - - +
774A ASP* 4.2 8.4 - - - +
776A ARG* 1.3 84.5 - - - +
778A GLU* 1.3 61.4 + - - +
780A LEU* 4.0 11.4 - - - +
781A SER* 3.2 23.2 + - - -
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Residues in contact with GLU 778 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A LYS* 4.4 18.1 + - - -
774A ASP* 3.3 15.2 + - - +
775A MET* 3.1 12.3 + - - +
777A ASP* 1.3 79.6 - - - +
779A ARG* 1.3 64.2 + - + +
781A SER* 3.2 9.8 + - - -
782A LYS* 3.1 20.4 + - + +
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Residues in contact with ARG 779 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
724A ILE* 3.6 25.6 + - + +
725A LEU* 4.2 15.0 - - + +
727A PRO* 5.8 1.8 - - - +
775A MET 2.7 19.6 + - - +
776A ARG 3.9 2.2 - - - +
778A GLU* 1.3 73.1 - - + +
780A LEU* 1.3 60.0 + - - +
782A LYS* 3.1 29.1 + - - +
783A ILE* 2.8 54.7 + - + +
786A MET* 4.7 3.6 - - - -
80C THR* 3.0 30.7 + - - +
86C GLU* 3.4 31.5 + - - +
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Residues in contact with LEU 780 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
724A ILE* 3.8 17.4 - - + +
776A ARG* 2.8 30.9 + - + +
777A ASP* 4.0 10.8 - - - +
779A ARG* 1.3 73.4 - - - +
781A SER* 1.3 62.6 + - - +
783A ILE* 3.5 2.4 + - - +
784A ILE* 3.2 36.5 + - + +
90C ALA* 3.8 25.4 - - + +
93C THR* 3.7 42.2 - - + +
94C PHE* 4.7 7.9 - - + -
114C LEU* 6.1 1.1 - - + -
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Residues in contact with SER 781 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777A ASP* 3.2 13.0 + - - -
778A GLU* 3.2 12.9 + - - -
779A ARG 3.1 0.6 - - - -
780A LEU* 1.3 81.5 - - - +
782A LYS* 1.3 61.6 + - - +
784A ILE* 3.4 9.2 + - - +
785A SER* 3.3 23.0 + - - -
115C GLY* 4.5 11.2 + - - +
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Residues in contact with LYS 782 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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778A GLU* 3.1 11.7 + - + +
779A ARG* 3.1 31.4 + - - +
781A SER* 1.3 77.1 - - - +
783A ILE* 1.3 60.4 + - - +
785A SER* 3.1 10.1 + - - -
786A MET* 2.8 42.4 + - + +
45C THR* 6.1 4.0 - - + -
48C GLN* 5.9 3.1 - - - +
78C LYS* 4.7 8.7 - - - +
80C THR* 3.0 33.4 - - - +
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Residues in contact with ILE 783 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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724A ILE* 3.6 30.1 - - + +
779A ARG* 2.8 40.9 + - - +
780A LEU 3.9 4.5 - - - +
782A LYS* 1.3 76.4 - - - +
784A ILE* 1.3 61.4 + - - +
786A MET* 3.3 11.5 + - - +
787A PHE* 3.1 17.8 + - - +
82C THR* 4.6 0.9 - - + -
86C GLU* 3.6 49.1 - - + +
87C PHE* 3.6 18.8 - - + -
90C ALA* 3.7 14.8 - - + -
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Residues in contact with ILE 784 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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780A LEU* 3.2 38.1 + - + +
781A SER* 3.8 7.4 - - - +
782A LYS 3.2 0.4 - - - -
783A ILE* 1.3 73.5 - - - +
785A SER* 1.3 65.5 + - - +
787A PHE* 3.3 7.2 + - - +
788A GLN* 2.8 51.6 + - + +
90C ALA* 5.2 6.1 - - + -
94C PHE* 4.2 9.4 - - + -
110C VAL* 3.8 24.0 - - + -
111C LEU* 5.3 2.2 - - + -
114C LEU* 3.8 28.7 - - + -
115C GLY 4.0 12.3 - - - +
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Residues in contact with SER 785 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781A SER 3.3 8.3 + - - -
782A LYS* 3.1 12.3 + - - -
784A ILE* 1.3 78.7 - - - +
786A MET* 1.3 58.2 + - - +
788A GLN* 3.0 13.6 + - - +
789A ALA* 2.9 26.2 + - - +
45C THR* 4.2 8.5 - - - +
115C GLY* 3.3 21.1 - - - -
116C GLU* 3.5 27.3 + - - +
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Residues in contact with MET 786 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
779A ARG* 4.7 5.8 - - - -
782A LYS* 2.8 40.6 + - + +
783A ILE* 3.5 11.7 - - - +
784A ILE 3.2 0.2 - - - -
785A SER* 1.3 75.1 - - - +
787A PHE* 1.3 65.2 + - - +
789A ALA* 2.9 22.9 + - - +
790A HIS* 3.0 13.9 + - - -
43C ASN 6.0 1.3 - - - +
45C THR* 4.4 14.6 - - + -
48C GLN* 4.9 5.4 - - - +
80C THR* 2.7 41.1 - - - +
81C GLY* 3.4 11.0 - - - +
82C THR* 2.4 46.4 - - - +
87C PHE* 3.8 2.2 - - + -
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Residues in contact with PHE 787 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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783A ILE 3.1 9.4 + - - +
784A ILE* 3.3 10.5 + - - +
786A MET* 1.3 73.0 - - - +
788A GLN* 1.3 67.1 + - + +
790A HIS* 3.1 12.6 + - + +
791A ILE* 3.1 37.7 + - + +
87C PHE* 3.2 45.0 - + + -
91C PHE* 3.9 33.2 - + + -
111C LEU* 4.1 15.0 - - + -
145C LEU* 4.3 13.9 - - + -
146C MET* 4.1 28.7 - - + -
149C VAL* 4.1 24.9 - - + -
150C MET* 5.4 0.2 - - + -
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Residues in contact with GLN 788 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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784A ILE* 2.8 26.9 + - + +
785A SER* 3.0 17.4 - - - +
786A MET 3.2 0.2 - - - -
787A PHE* 1.3 76.7 - - - +
789A ALA* 1.3 55.8 + - - +
791A ILE* 3.4 5.4 + - - +
792A ARG* 3.0 37.1 + - - +
111C LEU* 3.2 37.2 + - + +
114C LEU 2.9 25.5 + - - -
115C GLY* 3.3 1.0 - - - -
116C GLU* 2.6 39.4 + - + +
118C ILE* 4.0 21.6 - - + +
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Residues in contact with ALA 789 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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785A SER 2.9 13.2 + - - +
786A MET* 2.9 18.4 - - - +
788A GLN* 1.3 78.1 - - - +
790A HIS* 1.3 56.6 + - - +
792A ARG* 3.1 10.5 + - - +
793A GLY* 2.8 24.6 + - - -
38C ARG* 4.9 0.7 + - - -
43C ASN* 3.3 30.8 - - - +
44C PRO 3.6 18.2 - - - +
45C THR* 4.2 6.1 - - + +
116C GLU* 5.3 1.6 - - - -
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Residues in contact with HIS 790 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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786A MET 3.0 21.4 + - - -
787A PHE* 3.1 9.4 + - + +
789A ALA* 1.3 75.8 - - - +
791A ILE* 1.3 57.4 + - - +
793A GLY* 3.5 1.2 + - - -
794A TYR* 3.0 25.8 + - - +
797A ARG* 4.7 0.5 + - - -
43C ASN* 3.3 39.9 + - + +
81C GLY 3.3 26.5 - - - -
82C THR 3.8 12.6 + - - -
87C PHE* 3.6 19.6 - + + -
149C VAL* 3.9 19.6 - - + +
150C MET* 3.9 30.9 - - + +
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Residues in contact with ILE 791 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
787A PHE* 3.1 38.5 + - + +
788A GLN* 3.7 7.9 - - - +
790A HIS* 1.3 72.6 - - - +
792A ARG* 1.3 69.0 + - - +
793A GLY 3.1 1.1 - - - -
794A TYR* 3.2 6.0 + - - +
795A LEU* 2.9 36.8 + - + +
111C LEU* 3.9 22.2 - - + -
118C ILE* 4.2 19.5 - - + -
122C GLN 4.6 1.8 - - - +
126C ILE* 3.7 32.3 - - + -
145C LEU* 6.0 0.9 - - + -
149C VAL* 3.9 23.6 - - + -
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Residues in contact with ARG 792 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
788A GLN* 3.0 25.0 + - - +
789A ALA* 3.4 11.7 - - - +
791A ILE* 1.3 77.6 - - + +
793A GLY* 1.3 61.2 + - - +
795A LEU* 3.5 7.7 + - + +
796A MET* 3.1 25.1 + - - +
38C ARG* 3.9 34.7 - - - +
44C PRO 5.6 0.2 - - - -
46C GLU* 2.8 30.5 + - - -
116C GLU* 3.2 28.0 + - - +
117C ARG 2.8 26.3 + - - -
118C ILE* 4.1 11.8 - - + +
122C GLN* 4.0 28.6 + - - +
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Residues in contact with GLY 793 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
789A ALA 2.8 11.1 + - - -
790A HIS 3.5 0.2 + - - -
791A ILE 3.1 0.4 - - - -
792A ARG* 1.3 78.3 - - - +
794A TYR* 1.3 56.0 + - - +
796A MET* 3.2 1.7 + - - +
797A ARG* 2.8 59.0 + - - -
38C ARG* 3.7 16.2 - - - +
43C ASN* 3.5 6.5 - - - -
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Residues in contact with TYR 794 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790A HIS 3.0 18.2 + - - +
791A ILE* 3.2 4.9 + - - +
793A GLY* 1.3 74.5 - - - +
795A LEU* 1.3 69.1 + - + +
797A ARG* 3.4 5.0 + - - +
798A LYS* 3.1 21.8 + - + +
126C ILE* 3.5 19.5 - - + -
129C PHE* 3.1 50.3 + + + +
130C CYS* 3.8 13.6 + - - -
148C LYS 3.7 11.0 - - - -
149C VAL* 3.6 14.6 - - - +
152C GLY* 3.1 28.9 + - - -
153C PRO* 3.4 42.5 + - + +
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Residues in contact with LEU 795 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
791A ILE* 2.9 41.1 + - + +
792A ARG* 3.9 7.2 - - + +
794A TYR* 1.3 76.5 - - + +
796A MET* 1.3 58.6 + - - +
798A LYS* 3.2 4.6 + - - +
799A ALA* 3.0 26.8 + - - +
1001A MLI 5.2 2.3 - - - +
122C GLN* 4.0 36.6 - - + +
125C ASP* 3.8 18.2 - - + +
126C ILE* 4.2 8.5 - - - +
129C PHE* 3.8 31.3 - - + -
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Residues in contact with MET 796 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
792A ARG 3.1 15.5 + - - +
793A GLY 3.8 2.2 - - - +
795A LEU* 1.3 75.3 - - - +
797A ARG* 1.3 52.3 + - - +
798A LYS 3.0 4.9 - - - -
799A ALA* 3.0 14.1 + - + -
800A TYR* 2.8 32.9 + - - +
803A LEU* 5.0 9.0 - - + -
18C PHE* 4.6 6.1 - - + -
32C LYS* 5.7 2.7 - - - +
35C ASP* 2.9 65.7 - - + +
38C ARG* 4.1 8.3 - - + -
39C CYS* 3.7 14.1 - - - -
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Residues in contact with ARG 797 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790A HIS 4.7 0.2 + - - -
793A GLY* 2.8 37.2 + - - +
794A TYR* 3.9 6.4 - - - +
796A MET* 1.3 73.2 - - - +
798A LYS* 1.3 60.1 + - - +
800A TYR* 3.3 23.0 - - + +
801A LYS 4.0 0.5 + - - -
38C ARG 3.2 23.1 + - - +
39C CYS* 4.5 10.8 - - - +
41C GLY* 3.5 24.8 + - - -
42C MET 3.4 9.3 + - - -
43C ASN* 2.6 34.2 + - - +
152C GLY* 6.0 3.2 - - - -
153C PRO* 4.0 14.1 - - + +
154C PHE* 3.7 13.3 - - - -
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Residues in contact with LYS 798 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
794A TYR* 3.1 15.3 + - + +
795A LEU 3.5 4.7 - - - +
796A MET 3.0 0.4 - - - -
797A ARG* 1.3 76.8 - - - +
799A ALA* 1.3 64.3 + - - +
800A TYR 3.0 2.5 + - - -
801A LYS* 3.5 13.2 + - - +
802A LYS* 3.9 6.2 + - - +
1001A MLI 2.7 29.1 + - - +
129C PHE* 3.0 52.5 - - + -
153C PRO* 3.4 31.6 - - + -
154C PHE* 3.9 12.3 - - + -
----------------------------------------------------------
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Residues in contact with ALA 799 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
795A LEU 3.0 14.3 + - - +
796A MET* 3.5 20.9 - - + +
798A LYS* 1.3 77.7 - - - +
800A TYR* 1.3 63.4 + - - +
802A LYS* 3.2 9.3 + - + +
803A LEU* 3.0 28.3 + - + +
1001A MLI 3.7 23.8 + - - +
----------------------------------------------------------
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Residues in contact with TYR 800 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
796A MET* 2.8 13.4 + - - +
797A ARG* 3.3 21.8 - - + +
799A ALA* 1.3 76.1 - - - +
801A LYS* 1.3 55.5 + - + +
803A LEU* 2.6 31.7 + - + +
804A GLN* 2.9 49.6 + - + +
13C GLU* 4.2 9.0 + - - +
14C VAL* 3.6 35.2 + - + +
17C LEU* 3.5 35.1 - - + +
18C PHE* 4.4 0.9 - + - -
39C CYS* 3.5 35.0 - - + -
----------------------------------------------------------
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Residues in contact with LYS 801 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
797A ARG 4.0 1.6 + - - -
798A LYS 3.5 3.4 + - - +
799A ALA 3.5 0.4 - - - -
800A TYR* 1.3 80.5 - - - +
802A LYS* 1.3 60.5 + - - +
804A GLN* 3.3 18.8 + - + +
805A ASP* 3.2 42.3 + - - +
154C PHE* 3.8 41.3 - - + -
----------------------------------------------------------
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Residues in contact with LYS 802 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
798A LYS 3.9 4.5 + - - +
799A ALA* 3.2 13.7 + - - +
800A TYR 3.0 0.8 - - - -
801A LYS* 1.3 77.9 - - - +
803A LEU* 1.3 59.0 + - + +
805A ASP* 3.3 8.4 + - + +
806A GLN* 2.8 68.9 + - + +
1001A MLI 4.7 20.5 + - + +
96B GLU* 5.8 3.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 803 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
796A MET* 5.0 13.9 - - + -
799A ALA* 3.0 19.4 + - + +
800A TYR* 2.6 21.7 + - - +
802A LYS* 1.3 73.3 - - + +
804A GLN* 1.3 58.9 + - - -
806A GLN* 3.7 11.2 + - - +
807A ARG* 3.2 11.1 + - - +
17C LEU* 3.9 21.9 - - + +
18C PHE* 5.1 10.5 - - + -
21C TRP* 2.9 53.6 + - + +
----------------------------------------------------------
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Residues in contact with GLN 804 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
800A TYR* 2.9 53.7 + - + +
801A LYS* 3.7 19.5 - - + +
802A LYS 3.2 0.2 - - - -
803A LEU* 1.3 76.1 - - - +
805A ASP* 1.3 68.6 + - - +
807A ARG* 3.1 14.4 + - - +
808A ILE* 3.2 16.4 + - - +
13C GLU* 6.1 1.4 - - - +
17C LEU* 3.5 25.2 - - + +
----------------------------------------------------------
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Residues in contact with ASP 805 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
801A LYS* 3.2 38.8 + - - +
802A LYS* 3.7 9.7 - - + +
804A GLN* 1.3 78.6 - - - +
806A GLN* 1.3 63.9 + - + +
807A ARG 3.1 0.5 + - - -
808A ILE* 3.2 12.8 + - - +
809A GLY 3.0 17.0 + - - -
93B MET* 3.2 25.6 - - + +
----------------------------------------------------------
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Residues in contact with GLN 806 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
802A LYS* 2.8 58.9 + - + +
803A LEU* 4.1 10.0 - - - +
805A ASP* 1.3 75.2 - - + +
807A ARG* 1.3 51.3 + - - +
809A GLY 3.6 0.2 - - - -
810A LEU* 2.7 32.4 + - - +
93B MET* 3.3 36.2 + - + +
94B PHE* 3.2 28.2 - - + -
96B GLU* 5.9 0.6 + - - -
106B TYR* 4.5 9.0 + - - -
21C TRP* 3.4 19.7 - - + -
----------------------------------------------------------
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Residues in contact with ARG 807 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
803A LEU 3.2 14.2 + - - +
804A GLN* 3.1 10.6 + - - +
806A GLN* 1.3 73.6 - - - +
808A ILE* 1.3 73.5 + - + +
810A LEU 3.1 1.2 + - - -
811A THR* 2.8 30.9 + - - +
13C GLU* 4.9 4.2 + - - +
16C ASP* 4.0 22.3 + - - +
17C LEU* 3.9 37.2 - - - +
20C PHE* 3.5 41.2 - - + +
21C TRP* 3.3 11.4 - - - +
24C ARG* 4.4 16.2 - - - +
----------------------------------------------------------
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Residues in contact with ILE 808 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
804A GLN 3.7 12.3 - - - +
805A ASP* 3.2 11.1 + - - +
807A ARG* 1.3 83.0 - - + +
809A GLY* 1.3 65.7 + - - +
811A THR* 3.1 6.8 + - - +
812A LEU* 3.0 40.7 + - + +
93B MET* 5.8 0.4 - - - -
----------------------------------------------------------
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Residues in contact with GLY 809 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
805A ASP 3.0 8.1 + - - -
806A GLN 3.3 4.0 + - - -
808A ILE* 1.3 82.0 - - - +
810A LEU* 1.3 62.1 + - - +
811A THR 3.1 0.9 + - - -
812A LEU* 3.2 1.0 + - - -
813A ILE* 3.1 27.9 + - - +
90B ALA* 3.7 17.6 - - - +
93B MET* 3.9 19.5 - - - -
94B PHE* 4.3 3.8 - - - -
----------------------------------------------------------
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Residues in contact with LEU 810 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
806A GLN 2.7 19.8 + - - +
807A ARG 4.0 2.2 - - - +
809A GLY* 1.3 71.2 - - - +
811A THR* 1.3 61.5 + - - +
813A ILE* 3.9 11.7 - - + -
814A GLN* 3.1 38.5 + - + +
94B PHE* 3.9 6.6 - - + -
110B LEU* 3.5 46.2 - - + +
111B LEU* 4.1 11.0 - - + -
114B MET 4.0 0.7 - - - -
115B GLY* 3.9 23.8 - - - +
20C PHE* 4.0 3.1 - - + -
21C TRP* 3.7 30.3 - - + -
----------------------------------------------------------
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Residues in contact with THR 811 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
807A ARG* 2.8 26.1 + - - +
808A ILE* 3.4 9.4 - - - +
810A LEU* 1.3 78.4 - - - +
812A LEU* 1.3 67.3 + - + +
813A ILE 3.1 0.7 + - - -
814A GLN* 3.3 7.8 + - - +
815A ARG* 3.3 45.9 + - + +
116B ASP* 4.8 9.8 - - - +
20C PHE* 3.6 18.9 - - - -
24C ARG* 4.6 4.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 812 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808A ILE* 3.0 32.8 + - + +
809A GLY* 3.8 4.0 - - - +
811A THR* 1.3 76.9 - - + +
813A ILE* 1.3 61.7 + - - +
815A ARG* 3.2 19.0 - - - +
816A ASN* 2.6 37.8 + - - +
82B ASP* 3.0 36.6 - - + +
86B ALA* 4.0 33.4 - - + +
87B LEU* 4.3 2.0 - - + +
90B ALA* 4.0 13.0 - - + -
----------------------------------------------------------
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Residues in contact with ILE 813 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809A GLY 3.1 15.9 - - - +
810A LEU* 3.9 14.4 - - + +
811A THR 3.1 0.8 - - - -
812A LEU* 1.3 75.6 - - - +
814A GLN* 1.3 66.6 + - - +
815A ARG 3.2 0.2 + - - -
816A ASN 3.3 0.9 + - - -
817A VAL* 3.0 37.9 + - + +
87B LEU* 4.4 5.8 - - - -
90B ALA* 3.5 34.8 - - + +
91B PHE* 3.5 45.3 - - + -
94B PHE* 4.4 9.4 - - + -
102B ILE* 5.7 1.6 - - + -
107B LEU* 6.3 1.8 - - + -
110B LEU* 5.7 2.7 - - + -
111B LEU* 4.3 15.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN 814 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
810A LEU* 3.1 25.7 + - + +
811A THR* 3.3 3.0 + - - +
813A ILE* 1.3 78.1 - - - +
815A ARG* 1.3 55.6 + - - +
818A ARG* 3.1 40.1 + - - +
110B LEU 4.1 6.3 + - - -
111B LEU* 3.7 29.6 + - + +
114B MET 2.9 27.1 + - - -
115B GLY* 3.7 2.9 - - - -
116B ASP* 2.6 48.9 + - + +
118B PHE* 3.3 19.4 - - + -
20C PHE* 4.3 1.6 - - - -
----------------------------------------------------------
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Residues in contact with ARG 815 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
811A THR* 3.3 28.8 + - + +
812A LEU* 3.2 27.6 - - - +
813A ILE 3.2 0.8 - - - -
814A GLN* 1.3 76.1 - - - +
816A ASN* 1.3 68.4 + - - +
817A VAL 3.4 0.4 - - - -
818A ARG* 3.6 10.6 - - - +
819A LYS* 2.7 30.7 + - - +
80B GLY* 4.1 18.9 + - - +
82B ASP* 2.8 33.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN 816 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
812A LEU* 2.6 25.8 + - - +
813A ILE 4.0 0.7 - - - +
815A ARG* 1.3 79.7 - - - +
817A VAL* 1.3 61.9 + - + +
819A LYS* 3.2 6.1 + - - +
820A TRP* 2.9 29.3 + - - +
80B GLY 3.9 3.6 - - - +
81B THR* 3.9 8.1 + - - -
82B ASP* 3.3 42.2 + - - +
87B LEU* 3.1 45.9 - - + +
146B LYS* 3.4 7.2 + - - -
----------------------------------------------------------
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Residues in contact with VAL 817 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
813A ILE* 3.0 35.7 + - + +
816A ASN* 1.3 76.7 - - + +
818A ARG* 1.3 57.1 + - - +
820A TRP* 3.3 6.8 - - + +
821A LEU* 3.0 33.0 + - + +
91B PHE* 4.5 4.7 - - + -
111B LEU* 5.5 4.7 - - + -
118B PHE* 3.8 18.8 - - + -
126B VAL* 3.6 36.6 - - + -
142B MET* 4.2 13.2 - - + -
146B LYS* 2.9 20.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG 818 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
814A GLN* 3.1 26.6 + - - +
815A ARG* 3.6 9.7 - - - +
816A ASN 3.1 0.2 - - - -
817A VAL* 1.3 76.6 - - - +
819A LYS* 1.3 62.5 + - - +
820A TRP 3.0 5.8 + - - -
821A LEU* 3.2 20.0 + - + +
822A VAL* 3.4 15.6 + - - +
116B ASP* 3.1 30.3 + - - +
117B ASN 2.6 30.5 + - - -
118B PHE* 3.5 20.3 - - + -
122B GLU* 3.4 33.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 819 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
815A ARG 2.7 21.3 + - - +
816A ASN* 3.8 7.6 - - - +
818A ARG* 1.3 74.7 - - - +
820A TRP* 1.3 60.2 + - - +
822A VAL* 3.6 15.6 + - + +
823A LEU* 3.3 36.2 + - + +
76B GLU* 2.8 34.8 + - - +
77B LYS 4.7 4.7 - - - +
79B SER* 3.5 25.2 + - - -
80B GLY* 4.0 19.7 - - - +
81B THR* 4.5 6.5 - - - +
----------------------------------------------------------
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Residues in contact with TRP 820 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
816A ASN 2.9 7.5 + - - +
817A VAL* 3.3 7.4 - - + +
818A ARG 3.0 0.2 - - - -
819A LYS* 1.3 75.1 - - - +
821A LEU* 1.3 95.0 + - + +
822A VAL 2.8 10.7 + - - -
823A LEU* 4.6 3.6 - - - +
824A ARG* 3.0 57.3 + - + +
829A TRP* 4.9 7.3 - - - +
125B ASN 4.3 5.6 - - - -
126B VAL* 4.8 4.7 - - + -
129B ASP* 3.3 44.0 - - + -
142B MET* 5.4 4.3 - - - -
145B ILE* 3.5 28.8 + - + +
146B LYS* 2.9 60.1 - - + +
----------------------------------------------------------
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Residues in contact with LEU 821 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
817A VAL* 3.0 23.4 + - + +
818A ARG* 3.2 18.8 + - + +
820A TRP* 1.3 102.7 - - + +
822A VAL* 1.3 60.6 + - + +
824A ARG* 3.3 28.8 + - - +
825A ASN* 3.7 5.4 + - - -
118B PHE* 5.1 0.7 - - + -
122B GLU* 4.2 35.0 - - + +
125B ASN* 3.7 29.6 - - + +
126B VAL* 4.2 13.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL 822 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
818A ARG 3.8 11.9 - - - +
819A LYS* 3.6 20.6 - - + +
820A TRP 2.8 1.6 + - - -
821A LEU* 1.3 81.9 - - + +
823A LEU* 1.3 80.3 + - + +
824A ARG 3.0 4.0 + - - -
825A ASN* 3.2 15.5 + - - +
826A TRP* 3.9 7.3 + - + +
76B GLU* 4.6 9.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU 823 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
819A LYS* 3.3 23.8 + - + +
820A TRP* 4.4 2.9 - - - +
822A VAL* 1.3 80.9 - - + +
824A ARG* 1.3 56.6 + - - +
825A ASN 2.8 13.0 + - - -
826A TRP* 3.2 22.1 + - + +
829A TRP* 2.9 55.5 - - + +
830A ARG* 5.0 0.5 + - - +
76B GLU* 3.1 33.2 - - + +
77B LYS* 4.0 40.8 - - + +
81B THR* 5.2 2.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG 824 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
820A TRP* 3.0 52.0 + - + +
821A LEU* 3.3 31.3 + - - +
823A LEU* 1.3 74.8 - - - +
825A ASN* 1.3 81.3 + - - +
829A TRP* 3.9 10.0 - - - +
830A ARG* 4.0 14.7 + - - +
125B ASN* 3.6 42.4 + - - +
128B LYS* 5.6 8.1 - - - +
129B ASP* 6.2 0.8 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il