Contacts of the helix formed by residues 37 - 65 (chain Q) in PDB entry 3IS7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 37 (chain Q).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32Q TRP* 3.0 38.3 + - + +
35Q TRP* 4.2 21.3 - - + +
36Q GLY* 1.3 78.8 - - - +
38Q LYS* 1.3 58.9 + - - +
39Q ARG 3.2 1.0 + - - -
40Q LEU* 3.2 10.3 + - + +
41Q GLY* 3.0 22.7 + - - -
83Q THR* 4.0 11.4 - - - +
150Q LEU* 3.4 44.6 - - + +
153Q HIS* 3.2 12.3 - - + +
154Q MET* 4.0 5.8 - - + +
140V LEU* 3.9 19.7 - - + -
143V LYS* 4.5 12.3 - - + -
144V VAL* 5.0 0.7 - - + -
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Residues in contact with LYS 38 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33Q ASN* 3.7 24.7 + - + +
36Q GLY* 4.0 15.9 - - - +
37Q LEU* 1.3 72.8 - - - +
39Q ARG* 1.3 57.3 + - - +
42Q ALA* 2.8 31.0 + - - +
154Q MET 3.2 18.8 + - - +
155Q HIS* 5.6 4.5 - - - +
156Q GLU* 3.9 27.0 - - + +
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Residues in contact with ARG 39 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38J LYS* 6.1 0.4 - - - +
155J HIS* 3.4 46.2 + - - +
38Q LYS* 1.3 78.8 - - - +
40Q LEU* 1.3 62.4 + - - +
42Q ALA* 3.4 4.5 + - + +
43Q HIS* 3.0 24.3 + - + +
152Q SER 3.7 17.0 + - - -
153Q HIS* 3.0 31.1 + - + +
154Q MET 4.0 2.2 + - - -
155Q HIS 3.6 23.0 + - - +
156Q GLU* 3.9 22.6 + - - +
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Residues in contact with LEU 40 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32Q TRP* 3.7 52.0 - - + +
37Q LEU* 3.2 14.0 + - + +
39Q ARG* 1.3 78.3 - - - +
41Q GLY* 1.3 58.9 + - - +
43Q HIS* 3.4 3.6 + - - +
44Q GLU* 2.9 31.7 + - - +
83Q THR* 3.9 16.8 - - + +
87Q LEU* 4.7 5.6 - - + -
133Q TYR* 3.8 17.7 + - - +
149Q TYR* 3.8 23.6 - - + +
150Q LEU* 4.6 4.9 - - + -
153Q HIS* 3.7 28.3 + - + -
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Residues in contact with GLY 41 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29Q SER* 2.7 38.4 + - - -
30Q ARG* 5.6 0.2 - - - -
32Q TRP* 3.8 5.3 - - - +
33Q ASN* 3.4 24.7 - - - -
37Q LEU 3.0 11.2 + - - -
40Q LEU* 1.3 77.9 - - - +
42Q ALA* 1.3 55.8 + - - +
44Q GLU 3.4 0.2 + - - -
45Q TYR* 2.9 16.1 + - - +
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Residues in contact with ALA 42 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33Q ASN* 4.2 1.2 - - - +
38Q LYS 2.8 19.0 + - - +
39Q ARG* 3.9 4.9 - - + +
40Q LEU 3.3 0.2 - - - -
41Q GLY* 1.3 71.5 - - - +
43Q HIS* 1.3 64.7 + - - +
45Q TYR* 3.2 9.4 + - - +
46Q HIS* 3.1 36.5 + - + +
156Q GLU* 3.6 28.9 - - - +
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Residues in contact with HIS 43 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39Q ARG* 3.0 17.8 + - + +
40Q LEU* 3.8 3.8 - - - +
42Q ALA* 1.3 77.8 - - - +
44Q GLU* 1.3 64.6 + - - +
46Q HIS* 3.3 10.5 + - + +
47Q GLU* 2.9 44.9 + - + +
133Q TYR* 3.4 59.1 - + + +
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Residues in contact with GLU 44 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25Q TYR* 2.9 45.0 - - - +
28Q HIS* 3.6 7.4 + - - +
29Q SER* 3.5 18.2 - - - +
32Q TRP* 3.7 17.7 - - + -
40Q LEU 2.9 21.2 + - - +
43Q HIS* 1.3 73.3 - - - +
45Q TYR* 1.3 67.7 + - - +
47Q GLU* 3.1 13.0 + - - +
48Q SER* 3.0 21.1 + - - -
87Q LEU* 5.9 0.5 - - - +
90Q ASP* 2.4 35.9 - - - +
130Q HIS* 4.5 3.3 + - - -
133Q TYR* 5.4 4.0 - - - -
134Q LEU* 5.5 0.7 - - - +
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Residues in contact with TYR 45 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26Q PHE* 4.1 22.7 - + - -
29Q SER* 3.5 11.6 + - - +
30Q ARG* 3.4 29.4 - - - +
41Q GLY 2.9 14.4 + - - +
42Q ALA* 3.2 12.8 + - - +
44Q GLU* 1.3 75.6 - - - +
46Q HIS* 1.3 89.3 + + - +
48Q SER* 3.1 17.1 + - - -
49Q ILE* 3.1 36.8 + - + +
159Q HEM 3.4 34.2 + - + +
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Residues in contact with HIS 46 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42Q ALA* 3.1 31.2 + - + +
43Q HIS* 3.3 10.7 + - + +
44Q GLU 3.2 0.2 - - - -
45Q TYR* 1.3 102.6 - + - +
47Q GLU* 1.3 62.7 + - - +
49Q ILE* 3.3 11.0 + - + +
50Q ASP* 3.0 31.5 + - - +
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Residues in contact with GLU 47 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25Q TYR* 3.9 17.0 - - + -
43Q HIS* 2.9 42.3 + - + +
44Q GLU* 3.1 13.4 + - - +
46Q HIS* 1.3 77.4 - - + +
48Q SER* 1.3 63.2 + - - +
50Q ASP* 3.3 13.7 + - - +
51Q GLU* 3.1 27.9 + - - +
130Q HIS* 3.1 48.4 + - + +
133Q TYR* 4.4 1.7 - - - +
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Residues in contact with SER 48 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22Q ILE* 2.9 22.7 + - - +
25Q TYR* 3.8 10.0 - - - +
26Q PHE* 3.5 28.0 - - - +
44Q GLU 3.0 12.1 + - - -
45Q TYR 3.3 9.6 - - - -
47Q GLU* 1.3 76.2 - - - +
49Q ILE* 1.4 58.2 + - - +
51Q GLU* 3.0 8.4 + - - +
52Q MET* 2.9 50.1 + - - +
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Residues in contact with ILE 49 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45Q TYR* 3.1 48.9 + - + +
46Q HIS* 3.5 13.7 - - + +
48Q SER* 1.4 75.5 - - - +
50Q ASP* 1.3 67.2 + - - +
52Q MET* 3.2 18.5 + - + +
53Q LYS* 3.1 35.4 + - - +
159Q HEM 3.8 56.3 - - + +
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Residues in contact with ASP 50 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46Q HIS* 3.0 22.7 + - - +
47Q GLU* 3.6 16.0 - - - +
48Q SER 3.2 0.2 - - - -
49Q ILE* 1.3 81.0 - - - +
51Q GLU* 1.3 62.7 + - - +
53Q LYS* 3.2 27.0 + - - +
54Q HIS* 3.1 39.8 + - + +
126Q SER* 5.1 3.3 + - - +
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Residues in contact with GLU 51 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18Q GLU* 2.7 31.7 - - - +
21Q ALA* 3.7 11.6 - - + +
22Q ILE* 3.7 20.6 - - + +
25Q TYR* 3.5 23.5 - - + -
47Q GLU* 3.1 15.4 + - - +
48Q SER 3.0 8.1 + - - +
50Q ASP* 1.3 76.0 - - - +
52Q MET* 1.4 63.3 + - - +
54Q HIS* 3.0 19.0 + - - -
55Q ALA* 2.9 23.4 + - - +
94Q GLU* 3.3 13.3 - - - +
127Q GLU* 2.8 34.7 - - - +
130Q HIS* 5.6 0.7 - - - -
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Residues in contact with MET 52 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22Q ILE* 3.6 22.4 - - + +
26Q PHE* 4.2 4.0 - - + -
48Q SER* 2.9 37.1 + - - +
49Q ILE* 3.2 22.2 + - + +
51Q GLU* 1.4 76.0 - - - +
53Q LYS* 1.3 57.4 + - - +
55Q ALA 3.5 0.2 + - - -
56Q ASP* 3.0 23.0 + - - +
159Q HEM 2.3 113.1 - - + +
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Residues in contact with LYS 53 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49Q ILE* 3.1 24.5 + - - +
50Q ASP* 3.5 23.8 + - - +
51Q GLU 3.2 0.4 - - - -
52Q MET* 1.3 76.9 - - - +
54Q HIS* 1.3 66.1 - - + +
56Q ASP* 3.3 9.0 + - - +
57Q LYS* 3.2 27.0 + - - +
159Q HEM 3.1 47.6 - - + +
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Residues in contact with HIS 54 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18Q GLU* 3.7 14.5 + - - +
50Q ASP* 3.1 22.2 + - + +
51Q GLU* 3.0 30.6 + - - +
53Q LYS* 1.3 75.4 - - + +
55Q ALA* 1.3 67.6 + - - +
57Q LYS* 3.2 8.3 + - + +
58Q LEU* 3.0 27.2 + - - +
122Q ASP 5.4 0.6 - - - -
123Q ILE* 3.7 32.7 - - + +
126Q SER* 2.9 36.8 + - - -
127Q GLU* 3.8 8.3 + - - -
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Residues in contact with ALA 55 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15Q LEU* 3.8 23.1 - - + -
18Q GLU* 4.1 10.2 - - + +
19Q LEU* 4.6 1.8 - - + -
22Q ILE* 4.3 9.0 - - + -
51Q GLU 2.9 12.5 + - - +
52Q MET 3.6 9.0 - - - +
54Q HIS* 1.3 79.5 - - - +
56Q ASP* 1.3 62.2 + - - +
58Q LEU* 3.8 5.6 - - - +
59Q ILE* 2.9 32.3 + - + +
159Q HEM 3.9 13.7 - - + -
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Residues in contact with ASP 56 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52Q MET 3.0 13.8 + - - +
53Q LYS* 3.4 13.5 - - - +
54Q HIS 3.2 0.2 - - - -
55Q ALA* 1.3 76.9 - - - +
57Q LYS* 1.3 64.0 + - + +
59Q ILE* 3.3 2.5 + - - +
60Q GLU* 3.0 33.3 + - - +
159Q HEM 3.9 8.5 - - + +
26R PHE* 3.2 28.5 - - + -
30R ARG* 2.9 38.5 + - - +
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Residues in contact with LYS 57 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53Q LYS* 3.2 15.1 + - + +
54Q HIS* 3.2 10.5 + - + +
56Q ASP* 1.3 79.8 - - + +
58Q LEU* 1.3 57.1 + - - +
60Q GLU* 3.3 15.4 + - - +
61Q ARG* 2.9 30.0 + - - +
119Q LEU* 4.0 20.9 - - + +
123Q ILE* 5.5 1.3 - - + -
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Residues in contact with LEU 58 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11Q LEU* 4.0 33.4 - - + +
14Q ILE* 3.8 23.3 - - + -
15Q LEU* 3.8 27.4 - - + +
18Q GLU* 3.9 14.8 - - + -
54Q HIS 3.0 21.6 + - - +
55Q ALA* 3.8 4.3 - - - +
57Q LYS* 1.3 72.3 - - - +
59Q ILE* 1.3 67.6 + - - +
61Q ARG* 3.2 4.3 + - - +
62Q ILE* 2.9 32.4 + - + +
119Q LEU* 4.0 18.8 - - + -
120Q LEU* 4.2 9.0 - - + -
123Q ILE* 4.0 8.7 - - + -
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Residues in contact with ILE 59 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15Q LEU* 4.0 16.8 - - + -
55Q ALA* 2.9 27.3 + - + +
56Q ASP* 3.5 4.3 - - - +
58Q LEU* 1.3 78.1 - - - +
60Q GLU* 1.3 56.3 + - - +
62Q ILE* 3.4 9.0 + - - +
63Q LEU* 3.1 29.0 + - + +
69Q PRO* 3.9 15.0 - - + +
71Q LEU* 3.9 37.9 - - + -
159Q HEM 4.3 4.5 - - + -
26R PHE* 4.1 19.1 - - + -
27R LEU* 4.4 5.8 - - + -
30R ARG* 3.8 29.4 - - + -
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Residues in contact with GLU 60 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56Q ASP* 3.0 40.0 + - - +
57Q LYS* 3.7 17.6 - - - +
59Q ILE* 1.3 73.5 - - - +
61Q ARG* 1.3 66.7 + - - +
63Q LEU* 3.4 7.6 + - - +
64Q PHE* 3.1 22.3 + - - +
30R ARG* 3.6 29.1 + - + +
33R ASN* 5.1 4.4 - - + +
----------------------------------------------------------
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Residues in contact with ARG 61 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128P GLU* 2.9 31.9 + - - +
11Q LEU* 3.9 13.0 - - + -
57Q LYS 2.9 17.7 + - - +
58Q LEU* 3.7 4.9 - - - +
60Q GLU* 1.3 75.3 - - - +
62Q ILE* 1.3 65.3 + - - +
64Q PHE* 3.2 30.3 + - - +
65Q LEU* 3.0 37.5 + - + +
113Q ASP* 3.0 29.5 + - - -
115Q VAL* 3.5 23.2 - - - +
116Q SER* 2.9 23.7 + - - +
119Q LEU* 3.7 24.5 - - + -
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Residues in contact with ILE 62 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8Q ILE* 4.4 13.5 - - + +
11Q LEU* 3.7 44.0 - - + +
12Q ASN* 3.8 21.1 - - - +
15Q LEU* 4.2 11.4 - - + -
58Q LEU* 2.9 26.6 + - + +
59Q ILE* 3.7 6.1 - - - +
61Q ARG* 1.3 75.4 - - - +
63Q LEU* 1.3 62.3 + - - +
65Q LEU* 3.2 6.0 + - - +
66Q GLU 3.1 4.5 + - - -
67Q GLY* 2.8 52.0 + - - +
68Q LEU 3.9 3.8 - - - +
69Q PRO* 3.8 16.2 - - + -
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Residues in contact with LEU 63 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59Q ILE* 3.1 23.2 + - + +
60Q GLU* 3.7 6.5 - - - +
61Q ARG 3.2 0.4 - - - -
62Q ILE* 1.3 77.5 - - - +
64Q PHE* 1.3 62.6 + - - +
66Q GLU* 3.1 17.2 + - - +
67Q GLY 3.7 8.5 - - - +
68Q LEU* 5.1 1.3 - - + -
69Q PRO* 3.3 31.4 - - + -
27R LEU* 4.8 0.9 - - + -
30R ARG* 3.6 43.5 - - + +
31R MET* 3.9 18.6 - - + +
34R ASP* 3.6 32.3 - - + +
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Residues in contact with PHE 64 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128P GLU* 3.6 34.3 - - + -
131P ILE* 4.3 14.4 - - + -
132P ASP* 3.7 47.3 - - + +
135P GLU* 4.6 9.6 - - - +
60Q GLU 3.1 13.6 + - - +
61Q ARG* 3.2 44.6 + - - +
63Q LEU* 1.3 73.0 - - - +
65Q LEU* 1.3 68.2 + - + +
66Q GLU* 3.0 18.7 + - - +
34R ASP* 4.3 6.7 + - - -
----------------------------------------------------------
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Residues in contact with LEU 65 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128P GLU* 6.2 0.2 - - - -
3Q GLY* 3.5 39.5 + - - +
4Q ASP 5.5 0.4 - - - +
7Q VAL* 4.0 9.0 - - + -
8Q ILE* 4.0 14.9 - - + +
11Q LEU* 3.9 18.4 - - + -
61Q ARG* 3.0 37.0 + - - +
62Q ILE* 3.2 5.1 + - - +
64Q PHE* 1.3 90.7 - - + +
66Q GLU* 1.3 70.9 + - - +
67Q GLY 3.4 0.6 + - - -
113Q ASP* 3.9 11.2 - - - +
116Q SER* 3.9 20.0 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il