Contacts of the helix formed by residues 37 - 65 (chain U) in PDB entry 3IS7


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LEU 37 (chain U).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    140S  LEU*     4.2    17.9    -      -       +      -
    143S  LYS*     4.6     9.6    -      -       +      -
     32U  TRP*     2.8    43.7    +      -       +      +
     35U  TRP*     4.2    20.0    -      -       +      +
     36U  GLY*     1.3    77.0    -      -       -      +
     38U  LYS*     1.3    55.7    +      -       -      +
     40U  LEU*     3.3     9.7    +      -       +      +
     41U  GLY*     3.0    22.7    +      -       -      -
     83U  THR*     3.6    15.0    -      -       -      +
    150U  LEU*     3.3    45.5    -      -       +      +
    153U  HIS*     3.1    16.6    -      -       +      +
    154U  MET*     4.4     1.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 38 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33U  ASN*     3.8    24.3    +      -       -      +
     36U  GLY*     4.3    17.0    -      -       -      -
     37U  LEU*     1.3    73.3    -      -       -      +
     39U  ARG*     1.3    60.1    +      -       -      +
     42U  ALA*     3.0    29.5    +      -       -      +
    153U  HIS      3.1     3.2    +      -       -      -
    154U  MET      3.2    19.4    +      -       -      +
    155U  HIS*     5.7     6.3    -      -       -      +
    156U  GLU*     3.7    30.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 39 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    155C  HIS*     3.3    47.5    +      -       -      +
     38U  LYS*     1.3    76.1    -      -       -      +
     40U  LEU*     1.3    65.1    +      -       -      +
     42U  ALA*     3.5     2.6    +      -       -      +
     43U  HIS*     3.1    24.5    +      -       +      +
    152U  SER      3.6    17.7    +      -       -      -
    153U  HIS*     3.0    25.8    +      -       +      +
    154U  MET      4.1     1.2    +      -       -      -
    155U  HIS      3.4    25.2    +      -       -      +
    156U  GLU*     4.0    24.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 40 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32U  TRP*     3.5    50.5    -      -       +      +
     37U  LEU*     3.3    14.6    +      -       +      +
     39U  ARG*     1.3    79.3    -      -       -      +
     41U  GLY*     1.3    62.6    +      -       -      +
     43U  HIS*     3.3     3.9    +      -       -      +
     44U  GLU*     2.9    25.6    +      -       -      +
     83U  THR*     3.8    18.8    -      -       +      +
     87U  LEU*     4.9     4.0    -      -       +      -
    133U  TYR*     3.6    23.1    -      -       -      +
    149U  TYR*     3.7    20.0    -      -       +      +
    150U  LEU*     4.6     2.5    -      -       +      -
    153U  HIS*     3.6    29.4    +      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 41 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29U  SER*     2.7    38.7    +      -       -      -
     30U  ARG*     5.2     0.2    -      -       -      -
     32U  TRP*     3.7     5.3    -      -       -      +
     33U  ASN*     3.5    23.8    -      -       -      -
     37U  LEU      3.0    10.9    +      -       -      -
     38U  LYS      3.4     0.2    +      -       -      -
     39U  ARG      3.3     0.2    -      -       -      -
     40U  LEU*     1.3    78.5    -      -       -      +
     42U  ALA*     1.4    57.5    +      -       -      +
     44U  GLU      3.4     0.5    +      -       -      -
     45U  TYR*     2.9    15.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 42 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30U  ARG*     5.9     0.2    -      -       -      +
     33U  ASN*     4.3     0.8    -      -       -      +
     38U  LYS      3.0    17.9    +      -       -      +
     39U  ARG*     4.0     4.0    -      -       -      +
     41U  GLY*     1.4    71.9    -      -       -      +
     43U  HIS*     1.3    66.3    +      -       -      +
     45U  TYR*     3.2     8.0    +      -       -      +
     46U  HIS*     2.9    39.8    +      -       +      -
    156U  GLU*     4.1    20.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 43 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39U  ARG*     3.1    17.6    +      -       +      +
     40U  LEU*     3.8     4.0    -      -       -      +
     42U  ALA*     1.3    77.1    -      -       -      +
     44U  GLU*     1.3    63.9    +      -       -      +
     46U  HIS*     3.2    11.9    +      -       +      +
     47U  GLU*     2.9    44.7    +      -       +      +
    133U  TYR*     3.4    57.9    -      +       +      +
----------------------------------------------------------
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Residues in contact with GLU 44 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25U  TYR*     3.1    35.1    -      -       -      +
     28U  HIS*     3.3    15.3    +      -       +      +
     29U  SER*     3.7    15.5    -      -       -      +
     32U  TRP*     3.8    16.2    -      -       +      -
     40U  LEU      2.9    16.8    +      -       -      +
     41U  GLY      3.8     3.6    -      -       -      +
     43U  HIS*     1.3    77.1    -      -       -      +
     45U  TYR*     1.3    66.3    +      -       -      +
     47U  GLU*     3.3    13.5    +      -       -      +
     48U  SER*     3.0    21.8    +      -       -      -
     87U  LEU*     6.0     0.5    -      -       -      +
     90U  ASP*     2.5    34.9    -      -       -      +
    130U  HIS*     4.5     5.0    +      -       -      -
    133U  TYR*     5.4     3.6    -      -       -      -
    134U  LEU*     5.5     0.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 45 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26U  PHE*     3.8    26.7    -      +       -      -
     29U  SER*     3.5    11.6    +      -       -      +
     30U  ARG*     3.6    26.0    -      -       -      +
     41U  GLY      2.9    14.5    +      -       -      +
     42U  ALA*     3.2    10.7    +      -       -      +
     44U  GLU*     1.3    76.1    -      -       -      +
     46U  HIS*     1.3    82.8    +      +       -      +
     48U  SER*     3.2     7.0    +      -       -      -
     49U  ILE*     3.0    47.7    +      -       +      +
    159V  HEM      3.4    38.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 46 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42U  ALA*     2.9    36.2    +      -       +      +
     43U  HIS*     3.2    11.2    +      -       +      +
     45U  TYR*     1.3    95.2    -      +       -      +
     47U  GLU*     1.3    61.5    +      -       +      +
     49U  ILE*     3.7     9.5    -      -       +      +
     50U  ASP*     2.9    36.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 47 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25U  TYR*     3.8    18.1    -      -       +      -
     43U  HIS*     2.9    43.7    +      -       +      +
     44U  GLU*     3.6    12.6    -      -       -      +
     46U  HIS*     1.3    78.8    -      -       -      +
     48U  SER*     1.3    62.6    +      -       -      +
     50U  ASP*     3.2    15.9    +      -       -      +
     51U  GLU*     3.1    26.9    +      -       -      +
    130U  HIS*     3.4    45.1    +      -       +      +
    133U  TYR*     4.7     1.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 48 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22U  ILE*     2.9    22.7    +      -       -      +
     25U  TYR*     3.7    20.3    -      -       -      +
     26U  PHE*     3.6    18.9    -      -       -      +
     44U  GLU      3.0    12.8    +      -       -      -
     45U  TYR*     3.2     9.8    +      -       -      -
     47U  GLU*     1.3    75.1    -      -       -      +
     49U  ILE*     1.3    63.1    +      -       -      +
     51U  GLU*     3.2     6.0    +      -       -      +
     52U  MET*     3.0    40.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 49 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45U  TYR*     3.0    56.1    +      -       +      +
     46U  HIS*     3.7    13.0    -      -       +      +
     47U  GLU      3.3     0.2    -      -       -      -
     48U  SER*     1.3    76.3    -      -       -      +
     50U  ASP*     1.3    68.2    +      -       -      +
     52U  MET*     3.2    15.3    +      -       +      +
     53U  LYS*     3.0    32.2    +      -       -      +
    159V  HEM      3.7    55.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 50 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     46U  HIS*     2.9    20.9    +      -       -      +
     47U  GLU*     3.2    21.4    +      -       -      +
     49U  ILE*     1.3    82.6    -      -       -      +
     51U  GLU*     1.3    57.5    +      -       +      +
     53U  LYS*     3.3    19.9    +      -       -      +
     54U  HIS*     3.1    43.7    +      -       +      -
    126U  SER*     5.2     4.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 51 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18U  GLU*     2.6    29.5    -      -       -      +
     21U  ALA*     3.4    17.1    -      -       +      +
     22U  ILE*     3.7    20.8    -      -       +      +
     25U  TYR*     3.8    18.6    -      -       +      -
     47U  GLU*     3.1    15.2    +      -       -      +
     48U  SER      3.7     6.5    -      -       -      +
     50U  ASP*     1.3    74.5    -      -       +      +
     52U  MET*     1.3    65.3    +      -       -      +
     54U  HIS*     3.0    18.6    +      -       -      +
     55U  ALA*     2.9    23.7    +      -       -      +
     94U  GLU*     3.4     8.8    -      -       -      +
    127U  GLU*     2.6    37.0    -      -       -      +
    130U  HIS*     5.8     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with MET 52 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22U  ILE*     3.5    21.0    -      -       +      +
     26U  PHE*     4.1     5.4    -      -       +      -
     48U  SER*     3.0    36.1    +      -       -      +
     49U  ILE*     3.3    19.1    -      -       +      +
     51U  GLU*     1.3    76.1    -      -       -      +
     53U  LYS*     1.3    62.0    +      -       -      +
     55U  ALA*     3.3     3.8    +      -       -      +
     56U  ASP*     3.0    19.4    +      -       -      +
    159V  HEM      2.3   106.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 53 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49U  ILE*     3.0    26.0    +      -       +      +
     50U  ASP*     3.7    18.5    +      -       -      +
     51U  GLU      3.2     0.2    -      -       -      -
     52U  MET*     1.3    76.5    -      -       -      +
     54U  HIS*     1.3    65.8    +      -       +      +
     56U  ASP*     3.3     9.8    +      -       -      +
     57U  LYS*     3.2    27.4    +      -       +      +
    159V  HEM      3.3    48.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 54 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18U  GLU*     3.8    14.4    -      -       -      +
     50U  ASP*     3.1    22.7    +      -       +      -
     51U  GLU*     3.0    29.2    +      -       -      +
     53U  LYS*     1.3    76.0    -      -       +      +
     55U  ALA*     1.3    65.9    +      -       -      +
     57U  LYS*     3.2    10.9    +      -       +      +
     58U  LEU*     3.0    27.7    +      -       -      +
    122U  ASP      4.9     1.2    +      -       -      -
    123U  ILE*     3.6    30.5    -      -       +      +
    126U  SER*     2.9    36.5    +      -       -      -
    127U  GLU*     3.8     7.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 55 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15U  LEU*     3.8    22.7    -      -       +      -
     18U  GLU*     4.3     7.5    -      -       +      +
     19U  LEU*     4.6     2.7    -      -       +      -
     22U  ILE*     4.2    13.7    -      -       +      -
     51U  GLU      2.9    14.6    +      -       -      +
     52U  MET      3.6     7.4    -      -       -      +
     54U  HIS*     1.3    73.2    -      -       -      +
     56U  ASP*     1.3    58.3    +      -       -      +
     58U  LEU*     3.1     7.2    +      -       -      +
     59U  ILE*     2.9    36.5    +      -       +      +
    159V  HEM      4.0    13.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 56 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52U  MET      3.0    13.1    +      -       -      +
     53U  LYS*     3.3    13.2    -      -       -      +
     54U  HIS      3.2     0.2    -      -       -      -
     55U  ALA*     1.3    76.7    -      -       -      +
     57U  LYS*     1.3    70.3    +      -       +      +
     59U  ILE*     3.3     2.4    +      -       -      +
     60U  GLU*     3.0    37.9    +      -       -      +
     26V  PHE*     3.5    21.2    -      -       +      -
     30V  ARG*     2.9    39.7    +      -       -      +
    159V  HEM      3.8    16.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 57 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53U  LYS*     3.2    13.8    +      -       +      +
     54U  HIS*     3.2    15.3    +      -       +      +
     56U  ASP*     1.3    83.3    +      -       +      +
     58U  LEU*     1.3    61.6    +      -       -      +
     60U  GLU*     3.3    32.4    +      -       -      +
     61U  ARG*     3.2    23.6    +      -       -      +
    119U  LEU*     3.9    23.1    -      -       +      +
    123U  ILE*     5.3     1.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 58 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11U  LEU*     4.0    33.9    -      -       +      +
     14U  ILE*     3.7    24.2    -      -       +      -
     15U  LEU*     3.9    24.7    -      -       +      +
     18U  GLU*     3.9    15.5    -      -       +      -
     54U  HIS      3.0    18.0    +      -       -      +
     55U  ALA*     3.4     8.3    -      -       -      +
     57U  LYS*     1.3    74.2    -      -       -      +
     59U  ILE*     1.3    66.4    +      -       -      +
     61U  ARG*     3.3     4.4    +      -       -      +
     62U  ILE*     2.9    32.5    +      -       +      +
    119U  LEU*     4.1    19.1    -      -       +      -
    120U  LEU*     4.2     6.3    -      -       +      -
    123U  ILE*     4.0    12.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 59 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15U  LEU*     3.9    22.9    -      -       +      -
     55U  ALA      2.9    24.5    +      -       -      +
     56U  ASP*     3.6     4.3    -      -       -      +
     58U  LEU*     1.3    76.0    -      -       -      +
     60U  GLU*     1.4    61.3    +      -       -      +
     62U  ILE*     3.4     9.1    +      -       -      +
     63U  LEU*     3.0    26.5    +      -       +      +
     69U  PRO*     3.9    17.1    -      -       +      +
     71U  LEU*     3.7    27.6    -      -       +      -
     26V  PHE*     4.1    23.6    -      -       +      -
     27V  LEU*     4.5     6.7    -      -       +      -
     30V  ARG*     3.9    26.7    -      -       +      -
    159V  HEM      4.4     4.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 60 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56U  ASP*     3.0    38.9    +      -       -      +
     57U  LYS*     3.3    30.7    +      -       -      +
     58U  LEU      3.3     0.2    -      -       -      -
     59U  ILE*     1.4    75.3    -      -       -      +
     61U  ARG*     1.3    57.2    +      -       -      +
     63U  LEU*     3.5     8.6    +      -       -      +
     64U  PHE*     2.9    27.5    +      -       -      +
     30V  ARG*     3.6    26.1    +      -       +      +
     33V  ASN*     5.3     2.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 61 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    128E  GLU*     2.8    31.9    +      -       -      +
     11U  LEU*     3.9    14.4    -      -       +      -
     57U  LYS      3.2    17.6    +      -       -      +
     58U  LEU*     3.6     4.7    -      -       -      +
     60U  GLU*     1.3    75.3    -      -       -      +
     62U  ILE*     1.3    67.4    +      -       -      +
     64U  PHE*     3.1    28.7    +      -       -      +
     65U  LEU*     2.8    39.8    +      -       +      +
    113U  ASP*     2.9    29.3    +      -       -      -
    115U  VAL*     3.6    22.1    -      -       -      +
    116U  SER*     2.9    23.1    +      -       -      +
    119U  LEU*     3.8    22.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 62 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      8U  ILE*     4.4    12.1    -      -       +      +
     11U  LEU*     3.7    41.3    -      -       +      +
     12U  ASN*     3.7    23.8    -      -       -      +
     15U  LEU*     4.1    12.3    -      -       +      -
     58U  LEU      2.9    26.6    +      -       -      +
     59U  ILE      3.6     3.4    -      -       -      +
     61U  ARG*     1.3    75.5    -      -       -      +
     63U  LEU*     1.3    62.6    +      -       -      +
     65U  LEU*     3.1     7.6    +      -       -      +
     66U  GLU      3.1     4.9    +      -       -      -
     67U  GLY*     2.9    48.7    +      -       -      -
     68U  LEU      3.9     3.4    -      -       -      +
     69U  PRO*     3.7    17.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 63 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59U  ILE*     3.0    26.0    +      -       +      +
     60U  GLU*     3.6     7.9    -      -       -      +
     62U  ILE*     1.3    75.4    -      -       -      +
     64U  PHE*     1.3    64.1    +      -       -      +
     66U  GLU*     3.2    15.6    +      -       -      +
     67U  GLY      3.8     9.9    -      -       -      +
     68U  LEU*     6.1     1.3    -      -       +      -
     69U  PRO*     3.5    27.6    -      -       +      -
     27V  LEU*     4.7     0.9    -      -       +      -
     30V  ARG*     3.6    42.8    -      -       +      +
     31V  MET*     4.0    18.8    -      -       +      +
     34V  ASP*     3.8    35.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 64 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    128E  GLU*     3.6    32.1    -      -       +      -
    131E  ILE*     4.2    16.6    -      -       +      -
    132E  ASP*     3.6    47.6    -      -       +      +
    135E  GLU*     4.5    10.7    -      -       -      +
     60U  GLU      2.9    15.5    +      -       -      +
     61U  ARG*     3.1    41.2    +      -       -      +
     63U  LEU*     1.3    76.1    -      -       -      +
     65U  LEU*     1.3    72.4    +      -       +      +
     66U  GLU*     3.1    12.0    +      -       -      +
     34V  ASP*     4.5     6.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 65 (chain U). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3U  GLY*     3.6    38.9    +      -       -      +
      4U  ASP      5.5     0.2    -      -       -      +
      7U  VAL*     4.3     7.2    -      -       +      -
      8U  ILE*     3.9    17.0    -      -       +      +
     11U  LEU*     4.0    16.4    -      -       +      -
     61U  ARG*     2.8    34.6    +      -       -      +
     62U  ILE*     3.1     4.9    +      -       -      +
     64U  PHE*     1.3    90.8    -      -       +      +
     66U  GLU*     1.3    72.3    +      -       -      +
     67U  GLY      3.4     0.8    +      -       -      -
    113U  ASP*     3.8    10.1    -      -       -      +
    116U  SER*     3.8    21.5    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il