Contacts of the helix formed by residues 82 - 111 (chain Q) in PDB entry 3IS7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 82 (chain Q).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35Q TRP* 4.1 6.5 - - - -
81Q GLU* 1.3 81.0 - - + +
83Q THR* 1.3 54.7 + - - +
84Q GLN* 3.4 9.7 + - - +
85Q GLU* 2.9 36.0 + - - +
86Q MET* 2.7 40.4 + - - +
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Residues in contact with THR 83 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32Q TRP* 2.8 36.1 + - + +
35Q TRP* 4.4 4.9 - - - -
37Q LEU* 4.0 4.7 - - - +
40Q LEU* 3.9 11.4 - - + -
82Q ASN* 1.3 75.5 - - - +
84Q GLN* 1.3 66.0 + - - +
86Q MET* 3.1 3.6 + - - +
87Q LEU* 2.9 41.3 + - + +
141Q ILE* 4.8 2.9 - - + -
146Q LEU* 5.1 3.4 - - + -
149Q TYR* 4.3 6.3 - - + -
150Q LEU* 3.5 33.2 - - + +
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Residues in contact with GLN 84 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82Q ASN* 3.4 10.6 + - - +
83Q THR* 1.3 80.3 - - - +
85Q GLU* 1.3 62.8 + - + +
87Q LEU* 3.5 5.0 + - - +
88Q GLN* 3.1 22.3 + - + +
138Q LEU* 4.1 15.7 + - + +
141Q ILE* 4.0 33.5 - - + +
142Q GLN* 3.5 26.4 + - - +
146Q LEU* 4.9 15.0 - - + +
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Residues in contact with GLU 85 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79Q ILE 5.1 0.7 - - - +
80Q GLY* 4.0 6.4 - - - -
81Q GLU* 3.1 49.3 + - - +
82Q ASN* 2.9 28.4 + - - +
84Q GLN* 1.3 76.3 - - + +
86Q MET* 1.3 60.9 + - - +
88Q GLN* 3.2 6.1 + - - +
89Q CYS* 2.8 37.0 + - - -
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Residues in contact with MET 86 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28Q HIS* 3.5 62.1 - - + +
31Q MET* 3.6 24.5 - - + -
32Q TRP* 3.7 30.5 - - + +
35Q TRP* 3.4 26.9 - - + -
80Q GLY* 3.8 13.9 - - - -
82Q ASN* 2.7 27.4 + - - +
83Q THR 3.6 3.1 - - - +
85Q GLU* 1.3 71.2 - - - +
87Q LEU* 1.3 65.1 + - - +
89Q CYS* 3.3 2.3 + - - +
90Q ASP* 3.0 27.4 + - - +
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Residues in contact with LEU 87 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32Q TRP* 4.0 22.2 - - + -
40Q LEU* 4.7 6.3 - - + -
44Q GLU* 5.9 0.7 - - - +
83Q THR* 2.9 34.9 + - + +
84Q GLN 3.7 3.8 - - - +
86Q MET* 1.3 77.7 - - - +
88Q GLN* 1.3 62.7 + - - +
90Q ASP* 3.1 9.1 + - - +
91Q LEU* 2.9 22.6 + - - +
133Q TYR* 4.8 3.4 - - + -
134Q LEU* 3.9 25.7 - - + +
137Q GLN* 3.9 31.2 - - + -
138Q LEU* 3.8 25.1 - - + -
141Q ILE* 4.1 11.4 - - + -
149Q TYR* 4.2 6.1 - - - +
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Residues in contact with GLN 88 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84Q GLN* 3.1 17.9 + - + +
85Q GLU* 3.8 6.7 - - - +
87Q LEU* 1.3 76.0 - - - +
89Q CYS* 1.3 59.6 + - - +
91Q LEU* 3.2 22.8 + - - +
92Q ASN* 2.9 60.8 + - - +
95Q LEU* 5.7 2.0 - - - +
138Q LEU* 4.0 19.0 - - + +
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Residues in contact with CYS 89 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24Q GLN* 3.3 8.0 + - - +
28Q HIS* 4.2 1.6 - - + -
78Q LEU* 3.4 42.3 - - + +
79Q ILE 4.1 2.0 - - - -
80Q GLY* 3.9 18.4 - - - -
85Q GLU* 2.8 26.9 + - - +
86Q MET 3.5 4.9 - - - +
88Q GLN* 1.3 75.0 - - - +
90Q ASP* 1.3 65.3 + - - +
92Q ASN* 3.3 12.6 + - - +
93Q LEU* 3.1 19.1 + - - +
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Residues in contact with ASP 90 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24Q GLN* 2.9 22.8 + - - +
25Q TYR* 3.2 20.4 + - + +
28Q HIS* 3.0 16.8 + - - -
32Q TRP* 4.8 3.6 - - - -
44Q GLU* 2.4 32.6 - - - +
86Q MET 3.0 15.2 + - - +
87Q LEU* 3.6 6.9 - - - +
89Q CYS* 1.3 76.9 - - - +
91Q LEU* 1.3 57.8 + - - +
93Q LEU* 3.4 2.9 + - - +
94Q GLU* 2.9 32.1 + - - +
130Q HIS* 4.6 1.1 + - + -
134Q LEU* 4.1 22.3 - - + +
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Residues in contact with LEU 91 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87Q LEU 2.9 13.3 + - - +
88Q GLN* 3.3 25.4 - - - +
90Q ASP* 1.3 76.5 - - - +
92Q ASN* 1.3 64.5 + - - +
94Q GLU* 3.1 1.5 + - - +
95Q LEU* 2.9 43.2 + - + +
131Q ILE* 4.1 27.4 - - + -
134Q LEU* 4.0 18.1 - - + +
135Q GLU* 4.2 21.5 - - + +
138Q LEU* 3.9 22.9 - - + -
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Residues in contact with ASN 92 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78Q LEU* 4.0 13.8 - - + +
88Q GLN* 2.9 51.7 + - - +
89Q CYS* 3.3 16.3 + - - +
91Q LEU* 1.3 72.1 - - - +
93Q LEU* 1.3 64.2 + - - +
95Q LEU* 3.3 11.1 + - - +
96Q LYS* 3.1 22.9 + - - +
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Residues in contact with LEU 93 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17Q ASN* 4.7 6.7 - - + +
20Q ILE* 3.8 29.2 - - + -
21Q ALA* 3.8 35.2 - - + +
24Q GLN* 3.6 22.9 - - - +
25Q TYR* 3.9 10.8 - - + +
76Q LYS 5.0 1.3 - - - +
78Q LEU* 3.9 15.0 - - + +
89Q CYS 3.1 14.7 + - - +
90Q ASP 3.6 3.6 - - - +
92Q ASN* 1.3 82.2 - - - +
94Q GLU* 1.3 56.7 + - - +
96Q LYS* 3.4 12.9 + - + +
97Q ALA* 3.0 27.0 + - + +
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Residues in contact with GLU 94 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21Q ALA* 6.2 0.2 - - - -
25Q TYR* 2.7 20.6 + - - +
51Q GLU* 3.3 6.5 - - - +
90Q ASP 2.9 15.7 + - - +
91Q LEU* 3.1 4.9 + - - +
93Q LEU* 1.3 76.4 - - - +
95Q LEU* 1.3 58.2 + - - +
97Q ALA* 3.8 6.7 - - - +
98Q THR* 2.9 32.6 + - - -
127Q GLU* 2.8 46.4 - - - +
130Q HIS* 2.6 35.2 + - + +
131Q ILE* 3.6 22.0 - - + -
134Q LEU* 4.2 7.6 - - + -
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Residues in contact with LEU 95 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88Q GLN* 5.7 1.6 - - - +
91Q LEU* 2.9 41.0 + - + +
92Q ASN* 3.3 10.7 + - - +
94Q GLU* 1.3 72.5 - - - +
96Q LYS* 1.3 65.2 + - - +
98Q THR* 3.4 12.2 - - + +
99Q LYS* 3.2 21.7 + - - +
131Q ILE* 4.2 18.4 - - + -
135Q GLU* 5.8 2.5 - - - +
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Residues in contact with LYS 96 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13Q LYS* 5.0 9.2 - - - +
17Q ASN* 4.3 12.0 + - - +
92Q ASN 3.1 12.4 + - - +
93Q LEU* 3.5 17.0 - - + +
95Q LEU* 1.3 77.0 - - - +
97Q ALA* 1.4 64.4 + - - +
99Q LYS* 3.0 31.0 + - - +
100Q ASP* 3.0 38.3 + - - +
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Residues in contact with ALA 97 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14Q ILE* 4.8 0.2 - - - +
17Q ASN* 3.9 29.7 + - + +
18Q GLU* 6.0 1.3 - - - +
93Q LEU* 3.0 19.5 + - + +
94Q GLU* 3.3 17.2 + - - +
96Q LYS* 1.4 75.8 - - - +
98Q THR* 1.3 57.1 + - - +
100Q ASP* 3.3 3.5 + - - +
101Q LEU* 2.9 44.8 + - + +
127Q GLU* 4.9 5.6 - - + +
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Residues in contact with THR 98 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94Q GLU 2.9 18.1 + - - +
95Q LEU* 3.4 18.6 - - + +
97Q ALA* 1.3 76.2 - - - +
99Q LYS* 1.3 66.8 + - - +
101Q LEU* 3.6 9.5 + - - +
102Q ARG* 3.1 50.3 + - - +
124Q LEU* 3.9 15.5 - - - +
127Q GLU* 4.2 8.7 - - - +
128Q GLU* 4.5 2.6 - - - +
131Q ILE* 3.7 19.0 - - + +
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Residues in contact with LYS 99 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95Q LEU 3.2 8.7 + - - +
96Q LYS* 3.0 24.9 + - - +
98Q THR* 1.3 84.0 - - + +
100Q ASP* 1.3 67.2 + - - +
102Q ARG* 3.2 11.0 + - - +
103Q GLU* 3.1 45.7 + - + +
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Residues in contact with ASP 100 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10Q HIS* 4.8 1.7 + - - -
13Q LYS* 3.3 30.9 + - + -
14Q ILE* 3.7 12.5 - - + +
17Q ASN* 2.8 28.8 + - - +
96Q LYS* 3.0 39.1 + - - +
97Q ALA 3.6 6.7 - - - +
99Q LYS* 1.3 80.6 + - - +
101Q LEU* 1.3 61.2 + - - +
103Q GLU* 3.3 14.2 + - - +
104Q ALA* 2.8 29.6 + - - +
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Residues in contact with LEU 101 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14Q ILE* 3.3 41.2 - - + +
18Q GLU* 5.5 0.7 - - - +
97Q ALA* 2.9 34.1 + - + +
98Q THR* 3.7 7.9 - - - +
99Q LYS 3.3 0.2 - - - -
100Q ASP* 1.3 77.8 - - - +
102Q ARG* 1.3 62.8 + - - +
104Q ALA* 3.1 2.9 + - - +
105Q ILE* 2.9 30.3 + - + +
120Q LEU* 4.1 17.7 - - + +
123Q ILE* 4.3 12.1 - - + -
124Q LEU* 4.3 25.4 - - + -
127Q GLU* 3.9 27.1 - - + +
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Residues in contact with ARG 102 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111I VAL 5.5 0.7 - - - -
112I HIS* 2.8 55.6 + - + +
113I ASP* 4.0 8.9 + - - +
114I TYR* 3.9 13.8 - - + +
98Q THR* 3.1 38.9 + - - +
99Q LYS* 3.2 11.8 + - - +
101Q LEU* 1.3 78.5 - - - +
103Q GLU* 1.3 64.8 + - + +
105Q ILE* 3.3 3.2 + - - +
106Q VAL* 3.0 27.6 + - - +
124Q LEU* 4.1 16.0 - - + +
128Q GLU* 2.8 31.9 + - - +
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Residues in contact with GLU 103 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10Q HIS* 3.9 19.7 - - + -
13Q LYS* 4.9 5.5 + - - -
99Q LYS* 3.1 46.1 + - + +
100Q ASP* 3.7 15.2 - - - +
102Q ARG* 1.3 80.1 - - + +
104Q ALA* 1.3 62.4 + - - +
106Q VAL* 3.4 9.3 + - - +
107Q HIS* 3.3 16.5 + - - +
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Residues in contact with ALA 104 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10Q HIS* 3.5 32.3 + - + +
14Q ILE* 4.3 14.8 - - + -
100Q ASP 2.8 21.3 + - - +
101Q LEU* 3.1 5.1 + - - +
103Q GLU* 1.3 73.2 - - - +
105Q ILE* 1.3 62.9 + - - +
107Q HIS* 3.2 4.2 + - - +
108Q CYS* 3.0 25.5 + - - -
120Q LEU* 3.8 20.6 - - + -
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Residues in contact with ILE 105 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114I TYR* 3.4 52.0 - - + -
101Q LEU 2.9 21.0 + - - +
104Q ALA* 1.3 78.9 - - - +
106Q VAL* 1.3 62.0 + - - +
108Q CYS* 3.3 6.8 + - - +
109Q GLU* 3.0 22.2 + - - +
117Q ARG* 3.7 29.2 - - + +
120Q LEU* 3.6 22.9 - - + +
121Q LYS* 4.0 20.2 - - + +
124Q LEU* 4.0 17.7 - - + -
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Residues in contact with VAL 106 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112I HIS* 3.4 30.3 - - + +
114I TYR* 3.1 21.1 - - - +
102Q ARG 3.0 15.0 + - - +
103Q GLU* 3.7 11.4 - - - +
104Q ALA 3.4 0.2 - - - -
105Q ILE* 1.3 75.0 - - - +
107Q HIS* 1.3 66.2 + - - +
109Q GLU* 3.4 6.0 + - - +
110Q GLN* 3.2 29.6 + - + +
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Residues in contact with HIS 107 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4Q ASP* 3.2 20.7 + - - -
6Q LYS* 3.4 28.3 - - + +
7Q VAL* 3.7 28.0 - - + -
10Q HIS* 3.8 24.3 + + + +
103Q GLU 3.3 3.7 + - - +
104Q ALA 3.2 8.1 + - - +
105Q ILE 3.2 0.8 - - - -
106Q VAL* 1.3 82.8 - - + +
108Q CYS* 1.3 63.4 + - - +
110Q GLN* 3.1 25.0 + - - +
111Q VAL* 3.0 40.8 + - + +
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Residues in contact with CYS 108 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7Q VAL* 4.2 17.9 - - - -
10Q HIS* 6.0 2.2 - - - -
11Q LEU* 5.4 0.9 - - - -
104Q ALA* 3.0 21.0 + - - +
105Q ILE 3.3 4.9 + - - +
107Q HIS* 1.3 76.5 - - - +
109Q GLU* 1.3 62.4 + - - +
111Q VAL* 3.3 8.7 + - - -
112Q HIS 3.0 3.8 + - - -
113Q ASP* 2.9 41.0 + - - +
116Q SER* 3.8 20.2 - - - -
117Q ARG* 3.9 12.1 - - + -
120Q LEU* 3.7 22.4 - - - -
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Residues in contact with GLU 109 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109I GLU* 4.0 6.7 - - - +
109P GLU* 4.2 8.3 - - - +
117P ARG* 2.5 28.5 + - - -
105Q ILE 3.0 18.0 + - - +
106Q VAL* 3.6 7.9 - - - +
108Q CYS* 1.3 77.3 - - - +
110Q GLN* 1.3 59.7 + - + +
112Q HIS* 3.0 26.2 + - - -
114Q TYR* 3.5 23.6 + - - -
117Q ARG* 2.7 47.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 110 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106Q VAL* 3.2 18.0 + - + +
107Q HIS* 3.1 36.8 + - - +
109Q GLU* 1.3 80.7 - - - +
111Q VAL* 1.3 68.4 + - + +
112Q HIS* 3.3 13.3 + - - -
----------------------------------------------------------
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Residues in contact with VAL 111 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102P ARG* 5.4 0.9 - - - -
4Q ASP* 3.5 25.8 - - + +
7Q VAL* 3.7 26.5 - - + -
107Q HIS* 3.0 32.5 + - + +
108Q CYS 3.7 5.8 - - - +
110Q GLN* 1.3 82.1 - - + +
112Q HIS* 1.3 75.0 + - - +
113Q ASP* 3.3 7.6 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il