Contacts of the helix formed by residues 82 - 111 (chain X) in PDB entry 3IS7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 82 (chain X).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35X TRP* 4.1 8.1 - - - -
80X GLY 3.6 0.2 - - - -
81X GLU* 1.3 81.9 - - - +
83X THR* 1.3 60.7 + - - +
84X GLN* 3.4 18.9 + - - +
85X GLU* 3.0 38.4 + - - +
86X MET* 2.9 33.3 + - - +
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Residues in contact with THR 83 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A LYS* 5.9 0.2 - - - +
32X TRP* 2.9 25.2 + - + +
35X TRP* 4.4 3.2 - - - -
37X LEU* 3.7 7.6 - - - +
40X LEU* 3.9 17.5 - - + -
82X ASN* 1.3 73.8 - - - +
84X GLN* 1.3 63.8 + - - +
86X MET* 3.0 4.9 + - - +
87X LEU* 2.9 40.8 + - + +
141X ILE* 4.8 3.6 - - + -
146X LEU* 5.2 2.5 - - + -
149X TYR* 4.3 6.3 - - + -
150X LEU* 3.5 36.4 - - + +
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Residues in contact with GLN 84 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82X ASN* 3.4 16.7 + - - +
83X THR* 1.3 80.6 - - - +
85X GLU* 1.3 58.9 + - + +
87X LEU* 3.6 4.5 + - - +
88X GLN* 3.1 26.6 + - - +
138X LEU* 4.1 10.5 - - + +
141X ILE* 4.0 36.2 - - + +
142X GLN* 5.1 5.9 - - - +
146X LEU* 3.7 30.4 - - + +
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Residues in contact with GLU 85 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79X ILE 5.2 0.2 - - - +
80X GLY* 4.0 6.3 - - - -
81X GLU* 3.0 49.5 + - - +
82X ASN* 3.0 27.4 + - - +
84X GLN* 1.3 78.8 - - + +
86X MET* 1.3 60.7 + - - +
88X GLN* 3.8 5.8 - - - +
89X CYS* 2.9 34.4 + - - +
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Residues in contact with MET 86 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28X HIS* 3.6 62.4 - - + +
31X MET* 3.9 18.2 - - + -
32X TRP* 3.5 33.0 - - + +
35X TRP* 3.4 27.1 - - + -
80X GLY* 3.8 14.8 - - - -
82X ASN* 2.9 28.8 + - - +
83X THR 3.8 2.7 - - - +
85X GLU* 1.3 71.8 - - - +
87X LEU* 1.3 64.7 + - - +
89X CYS* 3.3 3.7 + - - +
90X ASP* 2.9 27.8 + - - +
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Residues in contact with LEU 87 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32X TRP* 4.1 19.1 - - + -
40X LEU* 4.6 5.6 - - + -
44X GLU* 5.9 0.4 - - - +
83X THR* 2.9 35.9 + - + +
84X GLN 3.8 3.4 - - - +
86X MET* 1.3 77.6 - - - +
88X GLN* 1.3 56.5 + - - +
90X ASP* 3.3 5.5 + - - +
91X LEU* 3.0 28.2 + - - +
133X TYR* 4.5 6.3 - - + -
134X LEU* 3.7 28.4 - - + +
137X GLN* 4.1 33.0 - - + -
138X LEU* 4.1 17.3 - - + -
141X ILE* 4.2 16.6 - - + -
149X TYR* 4.3 5.2 - - - +
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Residues in contact with GLN 88 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84X GLN 3.1 17.7 + - - +
85X GLU* 3.8 7.4 - - - +
86X MET 3.4 0.2 - - - -
87X LEU* 1.3 75.7 - - - +
89X CYS* 1.3 57.4 + - - +
91X LEU* 3.3 23.0 + - - +
92X ASN* 2.8 60.0 + - - +
95X LEU* 5.6 1.4 - - - +
138X LEU* 3.9 21.2 - - + +
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Residues in contact with CYS 89 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24X GLN* 3.2 8.8 + - - +
28X HIS* 4.2 2.0 - - + -
78X LEU* 3.4 47.4 - - + +
79X ILE 4.1 2.9 - - - -
80X GLY* 3.9 13.0 - - - -
85X GLU* 2.9 23.5 + - - +
86X MET 3.4 5.8 - - - +
88X GLN* 1.3 74.3 - - - +
90X ASP* 1.3 64.6 + - - +
92X ASN* 3.4 9.3 + - - +
93X LEU* 3.1 18.0 + - - +
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Residues in contact with ASP 90 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24X GLN* 2.8 29.4 + - - +
25X TYR* 3.2 19.6 + - + -
28X HIS* 2.9 17.9 + - - -
32X TRP* 4.7 3.5 - - - -
44X GLU* 2.3 34.2 - - - +
86X MET 2.9 16.9 + - - +
87X LEU 3.6 7.0 - - - +
89X CYS* 1.3 75.7 - - - +
91X LEU* 1.3 62.9 + - - +
93X LEU* 3.2 2.3 + - - +
94X GLU* 3.0 27.0 + - - +
130X HIS* 4.5 1.3 + - + -
134X LEU* 3.8 23.0 - - + +
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Residues in contact with LEU 91 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87X LEU 3.0 16.0 + - - +
88X GLN* 3.6 23.1 - - - +
90X ASP* 1.3 78.3 - - - +
92X ASN* 1.3 62.6 + - - +
94X GLU* 3.2 1.5 + - - -
95X LEU* 3.0 46.9 + - + +
131X ILE* 4.1 31.9 - - + -
134X LEU* 3.7 18.8 - - + +
135X GLU* 4.3 22.4 - - + +
138X LEU* 4.0 19.7 - - + -
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Residues in contact with ASN 92 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78X LEU* 4.1 14.9 - - + +
88X GLN* 2.8 52.2 + - - +
89X CYS* 3.8 9.6 - - - +
91X LEU* 1.3 74.9 - - - +
93X LEU* 1.3 62.9 + - - +
95X LEU* 3.5 12.3 + - - +
96X LYS* 3.3 21.3 + - - +
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Residues in contact with LEU 93 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17X ASN* 5.2 8.1 - - + +
20X ILE* 3.8 26.7 - - + -
21X ALA* 3.7 38.6 - - + +
24X GLN* 3.6 25.1 - - - +
25X TYR* 3.9 10.8 - - + +
76X LYS 5.0 1.6 - - - +
78X LEU* 4.3 12.5 - - + +
89X CYS 3.1 17.5 + - - +
90X ASP 3.6 4.0 - - - +
91X LEU 3.1 0.2 - - - -
92X ASN* 1.3 78.7 - - - +
94X GLU* 1.3 56.7 + - - +
96X LYS* 3.4 12.5 + - + +
97X ALA* 2.9 29.4 + - + +
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Residues in contact with GLU 94 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21X ALA* 6.1 0.2 - - - -
25X TYR* 2.8 19.5 + - - +
51X GLU* 4.1 2.0 - - - +
90X ASP 3.0 20.0 + - - +
91X LEU* 3.2 3.1 + - - +
93X LEU* 1.3 75.1 - - - +
95X LEU* 1.3 60.1 + - - +
97X ALA* 3.6 6.4 - - - +
98X THR* 2.8 35.8 + - - -
127X GLU* 2.7 42.7 - - - +
130X HIS* 2.4 37.2 + - + +
131X ILE* 3.6 21.8 - - + -
134X LEU* 4.2 7.0 - - + -
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Residues in contact with LEU 95 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88X GLN* 5.6 0.9 - - - +
91X LEU* 3.0 41.5 + - + +
92X ASN* 3.8 13.5 - - - +
93X LEU 3.4 0.2 - - - -
94X GLU* 1.3 75.6 - - - +
96X LYS* 1.3 60.8 + - - +
98X THR* 3.6 9.4 + - + +
99X LYS* 3.2 22.2 + - - +
131X ILE* 4.1 20.4 - - + -
135X GLU* 6.0 1.1 - - - +
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Residues in contact with LYS 96 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13X LYS* 4.6 8.9 - - - +
17X ASN* 3.9 13.9 + - - +
92X ASN 3.3 10.9 + - - +
93X LEU* 3.5 13.9 - - + +
95X LEU* 1.3 76.5 - - - +
97X ALA* 1.3 67.2 + - - +
99X LYS* 3.2 14.5 + - + +
100X ASP* 2.8 52.4 + - - +
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Residues in contact with ALA 97 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14X ILE* 5.0 0.2 - - - +
17X ASN* 3.9 27.4 + - + +
18X GLU* 6.0 1.3 - - - +
51X GLU* 6.2 0.2 - - - +
93X LEU* 2.9 22.1 + - + +
94X GLU* 3.2 17.7 + - - +
96X LYS* 1.3 72.8 - - - +
98X THR* 1.3 56.9 + - - +
100X ASP* 3.3 4.2 + - - +
101X LEU* 2.9 40.1 + - + +
127X GLU* 5.0 5.4 - - + +
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Residues in contact with THR 98 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94X GLU 2.8 16.8 + - - +
95X LEU* 3.7 11.9 - - + +
97X ALA* 1.3 73.3 - - - +
99X LYS* 1.3 67.2 + - - +
101X LEU* 3.2 3.9 + - - +
102X ARG* 2.9 55.9 + - - +
124X LEU* 3.6 21.0 - - - +
127X GLU* 4.0 11.1 - - - +
128X GLU* 4.6 2.1 - - - +
131X ILE* 3.8 20.4 - - + +
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Residues in contact with LYS 99 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95X LEU 3.2 14.9 + - - +
96X LYS* 3.2 18.4 + - + +
98X THR* 1.3 81.0 - - + +
100X ASP* 1.3 66.1 + - - +
102X ARG* 3.3 9.6 + - - +
103X GLU* 3.3 35.4 + - + +
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Residues in contact with ASP 100 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10X HIS* 4.7 2.4 + - - -
13X LYS* 3.7 28.7 + - + +
14X ILE* 3.6 13.4 - - + +
17X ASN* 2.6 34.6 + - - +
96X LYS* 2.8 45.1 + - - +
97X ALA 3.3 2.4 + - - +
99X LYS* 1.3 75.3 - - - +
101X LEU* 1.3 61.0 + - - +
103X GLU* 3.3 12.5 + - - +
104X ALA* 2.9 29.3 + - - +
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Residues in contact with LEU 101 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14X ILE* 3.4 40.4 - - + -
18X GLU* 5.4 0.9 - - - +
97X ALA* 2.9 23.3 + - + +
98X THR* 3.2 7.6 + - - +
100X ASP* 1.3 73.8 - - - +
102X ARG* 1.3 67.3 + - - +
104X ALA* 3.3 2.4 + - - +
105X ILE* 3.0 30.0 + - + +
120X LEU* 4.1 26.2 - - + +
123X ILE* 3.9 10.8 - - + -
124X LEU* 3.9 27.4 - - + -
127X GLU* 3.8 28.9 - - + -
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Residues in contact with ARG 102 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111N VAL 5.4 0.4 - - - -
112N HIS* 2.9 43.7 + - + +
113N ASP* 4.2 8.1 - - - +
114N TYR* 4.0 15.8 - - + +
98X THR* 2.9 45.2 + - - +
99X LYS* 3.7 7.8 - - - +
101X LEU* 1.3 81.1 - - - +
103X GLU* 1.3 61.9 + - + +
105X ILE* 3.3 2.5 + - - +
106X VAL* 3.1 28.0 + - - +
124X LEU* 3.6 17.9 - - + +
128X GLU* 2.9 31.5 + - - +
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Residues in contact with GLU 103 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10X HIS* 3.7 21.0 - - + -
13X LYS* 4.9 7.1 + - - -
99X LYS* 3.3 25.3 + - + +
100X ASP* 3.3 18.5 + - - +
101X LEU 3.2 0.6 - - - -
102X ARG* 1.3 74.9 - - + +
104X ALA* 1.3 65.7 + - - +
106X VAL* 3.6 9.6 + - + +
107X HIS* 3.2 17.7 + - - +
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Residues in contact with ALA 104 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10X HIS* 3.5 30.7 + - + +
14X ILE* 4.2 13.0 - - + -
100X ASP 2.9 16.3 + - - +
101X LEU* 3.3 4.2 + - - +
103X GLU* 1.3 76.2 - - - +
105X ILE* 1.3 58.4 + - - +
107X HIS* 3.2 3.8 + - - +
108X CYS* 2.9 32.4 + - - -
120X LEU* 3.5 23.3 - - + -
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Residues in contact with ILE 105 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114N TYR* 3.6 44.6 - - + -
101X LEU 3.0 22.4 + - - +
102X ARG 3.6 3.8 - - - +
103X GLU 3.2 0.2 - - - -
104X ALA* 1.3 74.9 - - - +
106X VAL* 1.3 67.8 - - - +
108X CYS* 3.2 6.9 + - - +
109X GLU* 3.0 22.3 + - - +
117X ARG* 4.0 28.4 - - + +
120X LEU* 3.7 22.2 - - + +
121X LYS* 4.1 24.0 - - + +
124X LEU* 4.1 15.7 - - + -
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Residues in contact with VAL 106 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112N HIS* 3.7 23.1 - - + +
114N TYR* 3.3 22.4 - - - +
102X ARG 3.1 14.3 + - - +
103X GLU* 3.6 11.0 - - + +
105X ILE* 1.3 76.9 - - - +
107X HIS* 1.3 64.2 + - - +
109X GLU* 3.2 6.4 + - - +
110X GLN* 3.0 48.3 + - + +
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Residues in contact with HIS 107 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4X ASP* 2.9 23.6 + - - -
6X LYS* 3.2 26.4 - - + +
7X VAL* 3.5 27.2 - - + +
10X HIS* 3.8 32.1 - + + +
103X GLU 3.2 5.1 + - - +
104X ALA 3.2 5.6 + - - +
105X ILE 3.2 0.8 - - - -
106X VAL* 1.3 80.7 - - + +
108X CYS* 1.4 62.7 + - - +
110X GLN* 3.3 21.6 + - - +
111X VAL* 3.1 40.5 + - + +
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Residues in contact with CYS 108 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7X VAL* 4.1 20.2 - - - -
10X HIS* 6.0 1.1 - - - -
11X LEU* 5.3 1.1 - - - -
104X ALA* 2.9 21.8 + - - +
105X ILE 3.2 4.7 + - - +
107X HIS* 1.4 75.2 - - - +
109X GLU* 1.3 63.3 + - - +
111X VAL* 3.3 8.2 + - - -
112X HIS 3.1 3.6 + - - -
113X ASP* 2.8 44.5 + - + +
116X SER* 3.9 20.0 - - - -
117X ARG* 3.9 11.7 - - + -
120X LEU* 3.8 21.1 - - - -
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Residues in contact with GLU 109 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109N GLU* 4.1 9.0 - - - +
109O GLU* 4.0 12.5 - - - +
117O ARG* 2.9 42.9 + - - -
105X ILE 3.0 12.6 + - - +
106X VAL* 3.5 10.8 - - - +
108X CYS* 1.3 75.4 - - - +
110X GLN* 1.3 65.7 + - + +
112X HIS* 3.0 21.3 + - - -
114X TYR* 3.5 17.0 + - - -
117X ARG* 3.0 30.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 110 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106X VAL* 3.0 34.8 + - + +
107X HIS* 3.3 30.6 + - - +
109X GLU* 1.3 79.3 - - + +
111X VAL* 1.3 63.8 + - + +
112X HIS* 3.6 15.2 + - - -
----------------------------------------------------------
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Residues in contact with VAL 111 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102O ARG* 5.5 0.3 - - - -
4X ASP* 4.0 22.9 - - + +
7X VAL* 3.6 27.1 - - + -
107X HIS* 3.1 39.2 + - + +
108X CYS 3.9 4.0 - - - +
109X GLU 3.2 0.4 - - - -
110X GLN* 1.3 80.7 - - + +
112X HIS* 1.3 73.5 + - - +
113X ASP* 4.2 6.1 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il