Contacts of the helix formed by residues 94 - 135 (chain E) in PDB entry 3MIW
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 94 (chain E).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A EDO 5.3 11.9 - - - +
133A ASN* 6.1 0.4 - - - +
135D ILE* 3.7 45.3 - - + -
95E ILE* 1.3 57.3 + - + +
96E GLU* 4.0 13.9 - - + +
97E GLN* 2.4 66.0 + - + +
98E GLN* 3.0 4.7 + - - -
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Residues in contact with ILE 95 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94E MET* 1.3 71.6 - - + +
96E GLU* 1.3 66.0 - - + +
97E GLN 3.2 0.3 + - - -
98E GLN* 3.3 14.7 + - - +
99E MET* 3.1 17.5 + - + +
95G ILE* 4.2 24.9 - - + -
96G GLU* 4.5 18.3 - - + +
99G MET* 3.3 26.4 - - + +
95I ILE* 6.2 2.2 - - + -
99I MET* 5.7 2.9 - - + -
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Residues in contact with GLU 96 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A EDO 4.6 9.2 - - - +
95C ILE* 5.0 15.9 - - + -
98C GLN* 2.6 31.3 + - - +
94E MET* 3.1 17.1 - - + +
95E ILE* 1.3 83.8 - - + +
97E GLN* 1.3 59.1 + - - +
99E MET* 3.0 19.0 - - - +
100E ASP* 3.9 0.7 + - - -
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Residues in contact with GLN 97 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A EDO 6.0 1.1 - - - -
135D ILE* 5.5 4.7 - - + -
94E MET* 2.4 55.1 + - + +
96E GLU* 1.3 71.5 - - - +
98E GLN* 1.3 63.9 + - - +
99E MET 3.0 2.0 - - - -
100E ASP* 3.0 28.5 + - - +
101E ARG* 3.8 2.3 + - - +
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Residues in contact with GLN 98 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94E MET 3.0 7.1 + - - +
95E ILE* 3.3 12.1 + - - +
97E GLN* 1.3 74.5 - - - +
99E MET* 1.3 54.5 + - - +
101E ARG* 2.6 39.1 + - - +
102E ILE* 3.2 7.1 + - - +
96G GLU 5.6 0.2 - - - +
99G MET* 3.7 34.5 - - + -
100G ASP* 4.9 5.6 - - - +
103G VAL* 4.5 4.1 - - + +
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Residues in contact with MET 99 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95C ILE 5.3 2.2 - - - +
98C GLN* 3.4 19.7 - - + +
99C MET* 4.0 28.3 - - + -
102C ILE* 4.5 17.2 - - + +
95E ILE* 3.1 18.8 - - + +
96E GLU* 3.0 18.2 - - - +
98E GLN* 1.3 78.1 - - - +
100E ASP* 1.3 55.1 + - - +
102E ILE* 3.0 15.4 + - + +
103E VAL* 2.9 33.6 + - - +
99G MET* 3.9 27.1 - - - +
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Residues in contact with ASP 100 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A EDO 4.1 10.7 - - - -
129A ARG* 3.5 51.5 + - - +
98C GLN* 2.7 30.2 + - - -
101C ARG* 4.1 7.6 + - - -
131D HIS* 4.7 1.9 + - - -
97E GLN* 3.0 22.2 + - - +
99E MET* 1.3 77.0 - - - +
101E ARG* 1.3 57.0 + - - +
103E VAL* 4.0 6.8 - - - +
104E LYS* 3.1 29.0 + - - +
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Residues in contact with ARG 101 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97E GLN 3.8 1.5 + - - +
98E GLN* 2.6 26.3 + - - +
100E ASP* 1.3 73.4 - - - +
102E ILE* 1.3 54.5 + - - +
104E LYS* 3.8 10.8 - - - +
105E GLU* 2.9 38.2 + - + +
103G VAL* 4.2 20.6 - - + -
107G ARG* 5.2 4.7 - - - +
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Residues in contact with ILE 102 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102C ILE* 4.0 20.2 - - + -
98E GLN 3.2 4.2 + - - +
99E MET* 3.0 22.1 + - + +
101E ARG* 1.3 74.9 - - - +
103E VAL* 1.3 62.2 + - - +
105E GLU* 3.4 1.4 + - - -
106E MET* 2.8 36.8 + - + +
99G MET* 4.0 24.7 - - + -
102G ILE* 3.8 27.4 - - + -
103G VAL* 3.6 22.0 - - + -
106G MET* 3.7 20.7 - - + +
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Residues in contact with VAL 103 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A GLU* 5.7 3.1 - - - +
129A ARG* 6.3 0.2 - - - +
98C GLN* 4.4 6.7 - - + +
101C ARG* 4.6 30.3 - - + +
102C ILE* 3.2 36.8 - - + +
105C GLU* 6.0 3.1 - - + -
99E MET 2.9 22.7 + - - +
100E ASP* 4.2 7.4 - - - +
102E ILE* 1.3 73.9 - - - +
104E LYS* 1.3 65.2 + - - +
106E MET* 2.9 10.0 + - + +
107E ARG* 2.9 22.8 + - + +
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Residues in contact with LYS 104 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A EDO 3.3 43.2 + - - +
125A GLU* 3.9 21.3 - - - +
129A ARG* 4.7 7.6 - - - +
100E ASP 3.1 20.4 + - - +
101E ARG* 3.8 10.1 - - - +
103E VAL* 1.3 78.6 - - - +
105E GLU* 1.3 66.2 + - - +
107E ARG* 2.8 22.7 + - - +
108E ARG* 2.9 47.5 + - - +
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Residues in contact with GLU 105 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101E ARG* 2.9 30.9 + - + +
102E ILE 3.4 3.3 + - - +
104E LYS* 1.3 80.1 + - + +
106E MET* 1.3 60.1 - - - +
108E ARG* 2.9 41.2 + - - +
109E GLN* 3.3 23.8 + - - +
103G VAL* 4.4 16.4 - - + -
106G MET* 4.0 23.3 - - + +
107G ARG* 3.5 29.8 + - + +
110G LEU* 3.8 21.1 - - - +
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Residues in contact with MET 106 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102C ILE* 3.3 34.1 - - - -
105C GLU* 3.5 24.2 - - + -
106C MET* 3.4 28.7 - - + +
109C GLN* 3.1 30.3 - - + +
102E ILE* 2.8 15.3 + - + +
103E VAL* 3.1 13.7 - - + +
104E LYS 2.9 0.2 - - - -
105E GLU* 1.3 74.9 - - - +
107E ARG* 1.3 54.9 + - - +
108E ARG 3.0 4.7 - - - -
109E GLN* 3.0 27.8 + - - +
110E LEU* 3.1 8.1 + - - +
106G MET* 3.2 28.3 - - + -
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Residues in contact with ARG 107 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121A ILE* 6.4 1.6 - - + -
125A GLU* 4.2 17.0 - - - +
103E VAL* 2.9 11.6 + - + +
104E LYS* 2.8 8.4 + - + +
106E MET* 1.3 75.6 - - - +
108E ARG* 1.3 57.1 + - - +
109E GLN 3.2 0.7 - - - -
110E LEU* 4.0 8.5 - - - +
111E GLU* 3.1 29.3 + - - +
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Residues in contact with ARG 108 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A EDO 5.4 2.0 + - - -
122A GLU* 4.9 9.7 + - - -
104E LYS* 2.9 38.4 + - + +
105E GLU* 2.9 44.9 + - - +
106E MET 3.0 0.2 - - - -
107E ARG* 1.3 75.9 - - - +
109E GLN* 1.3 63.0 + - - +
111E GLU* 4.2 5.9 - - - +
112E MET* 3.5 15.1 + - - +
110G LEU* 3.4 30.3 - - + +
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Residues in contact with GLN 109 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109C GLN* 3.3 30.4 + - - +
105E GLU 3.3 15.7 + - - +
106E MET* 3.0 13.4 + - - +
108E ARG* 1.3 76.7 - - - +
110E LEU* 1.3 53.0 + - - +
112E MET* 2.8 9.7 + - - +
113E ILE* 2.6 40.3 + - + +
106G MET* 3.6 31.8 + - + +
109G GLN* 3.7 26.2 + - - +
110G LEU* 3.7 27.9 - - + +
113G ILE* 3.9 14.5 - - - +
106I MET* 6.5 0.2 - - - -
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Residues in contact with LEU 110 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108C ARG* 6.0 3.6 - - + -
109C GLN* 4.9 13.9 + - + +
106E MET 3.1 10.3 + - - +
107E ARG* 4.3 7.2 - - - +
109E GLN* 1.3 76.3 - - - +
111E GLU* 1.3 56.9 + - - +
112E MET 2.8 10.4 + - - -
113E ILE* 4.1 11.1 - - - +
114E ASP* 2.8 26.9 + - - +
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Residues in contact with GLU 111 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121A ILE* 6.4 2.5 - - + -
107E ARG 3.1 21.5 + - - +
108E ARG* 4.4 6.5 - - + +
110E LEU* 1.3 75.2 - - - +
112E MET* 1.3 57.6 + - - +
114E ASP* 3.9 8.7 - - - +
115E LYS* 3.3 24.4 + - - +
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Residues in contact with MET 112 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108E ARG 3.5 12.1 + - - +
109E GLN 2.8 8.6 + - - +
110E LEU 2.8 1.4 - - - -
111E GLU* 1.3 80.2 - - - +
113E ILE* 1.3 56.2 + - - +
114E ASP 2.7 5.6 - - - -
115E LYS* 2.6 35.8 + - + +
116E LEU* 2.7 11.8 + - - +
110G LEU* 4.2 16.2 - - + +
113G ILE* 3.4 31.2 - - + -
114G ASP* 3.6 40.2 - - + +
117G THR* 4.6 8.1 - - + +
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Residues in contact with ILE 113 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109C GLN* 3.5 36.8 - - + +
112C MET* 4.7 21.3 - - + -
113C ILE* 4.8 19.1 - - + +
116C LEU* 5.4 4.9 - - + -
109E GLN* 2.6 28.8 + - + +
110E LEU* 4.1 5.6 - - - +
112E MET* 1.3 72.9 - - - +
114E ASP* 1.3 59.7 + - - +
116E LEU* 3.7 16.6 - - + +
117E THR* 3.1 30.9 + - - +
113G ILE* 3.7 32.3 - - + -
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Residues in contact with ASP 114 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112C MET* 6.3 1.6 - - - -
110E LEU 2.8 16.9 + - - +
111E GLU* 3.9 10.4 - - - +
112E MET 2.7 0.4 - - - -
113E ILE* 1.3 75.9 - - - +
115E LYS* 1.3 69.9 + - - +
116E LEU 3.2 0.2 + - - -
117E THR* 3.2 8.3 + - - -
118E THR* 2.9 28.3 + - - -
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Residues in contact with LYS 115 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114A ASP* 5.3 9.2 - - - -
111E GLU 3.3 19.2 + - - +
112E MET* 2.6 25.4 + - + +
114E ASP* 1.3 78.6 - - + +
116E LEU* 1.3 57.0 + - - +
118E THR* 3.1 14.0 + - + +
119E ARG* 2.9 23.0 + - - +
117G THR* 5.3 8.5 - - + +
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Residues in contact with LEU 116 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116C LEU* 4.2 25.4 - - + -
112E MET 2.7 14.7 + - - +
113E ILE* 3.7 16.2 - - + +
115E LYS* 1.3 68.7 - - - +
117E THR* 1.3 59.3 + - - +
118E THR 3.0 1.8 - - - -
119E ARG* 2.6 27.8 + - + +
120E GLU* 2.8 12.8 + - - +
113G ILE* 4.9 8.7 - - + -
116G LEU* 3.9 25.4 - - + +
117G THR* 3.8 26.2 + - - +
120G GLU* 3.2 39.7 - - + -
116I LEU* 6.0 0.7 - - + -
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Residues in contact with THR 117 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112C MET* 4.7 7.9 + - - +
115C LYS* 5.8 1.8 - - + -
116C LEU* 3.2 42.0 - - + +
119C ARG* 4.9 7.0 - - + +
113E ILE* 3.1 15.0 + - - +
114E ASP* 3.6 10.7 - - - -
116E LEU* 1.3 76.1 - - - +
118E THR* 1.3 65.9 + - - +
120E GLU* 3.7 0.8 - - - +
121E ILE* 3.0 37.2 + - + +
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Residues in contact with THR 118 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114E ASP* 2.9 21.5 + - - -
115E LYS* 3.2 16.8 - - + +
116E LEU 3.0 0.2 - - - -
117E THR* 1.3 78.9 - - - +
119E ARG* 1.3 62.8 + - - +
121E ILE* 3.7 7.9 + - - +
122E GLU* 3.6 18.5 + - - +
36J EDO 5.5 2.4 + - - -
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Residues in contact with ARG 119 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115E LYS 2.9 8.7 + - - +
116E LEU* 2.6 25.0 + - - +
118E THR* 1.3 73.9 - - - +
120E GLU* 1.3 59.2 + - - +
122E GLU* 3.5 15.3 - - - +
123E GLN* 3.5 13.5 - - - +
117G THR* 5.1 6.1 - - + -
120G GLU* 3.8 26.7 - - + -
121G ILE* 5.1 1.6 - - + +
124G ILE* 3.5 19.0 - - + +
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Residues in contact with GLU 120 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116C LEU* 3.3 32.2 - - + +
119C ARG* 4.5 10.3 - - + -
120C GLU* 2.5 36.9 + - - +
123C GLN* 3.1 36.2 + - - +
116E LEU* 2.8 14.0 + - + +
117E THR 3.7 7.0 - - - +
118E THR 3.3 0.4 - - - -
119E ARG* 1.3 73.6 - - - +
121E ILE* 1.3 64.8 + - - +
123E GLN* 3.1 12.8 + - - +
124E ILE* 3.3 4.6 + - - +
120G GLU* 2.5 38.6 - - - +
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Residues in contact with ILE 121 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119C ARG* 4.6 24.7 - - + +
117E THR* 3.0 31.4 + - + +
118E THR* 4.3 7.2 - - - +
119E ARG 3.5 0.4 - - - -
120E GLU* 1.3 72.7 - - - +
122E GLU* 1.3 67.8 + - - +
124E ILE* 2.9 30.5 + - + +
125E GLU* 2.9 15.6 + - + +
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Residues in contact with GLU 122 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118E THR 3.6 10.6 + - - +
119E ARG* 3.5 12.3 + - - +
121E ILE* 1.3 79.2 - - - +
123E GLN* 1.3 55.9 + - - +
125E GLU* 3.6 6.6 + - - +
126E LEU* 3.0 28.1 + - - +
124G ILE* 3.8 19.5 - - + +
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Residues in contact with GLN 123 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123C GLN* 3.1 28.5 + - - +
119E ARG 3.5 5.8 - - - +
120E GLU* 3.3 9.8 - - - +
121E ILE 3.0 0.6 - - - -
122E GLU* 1.3 74.9 - - - +
124E ILE* 1.3 56.9 + - - +
126E LEU* 3.1 2.2 + - - +
127E LEU* 2.8 37.5 + - + +
120G GLU* 2.7 23.5 + - - +
123G GLN* 2.6 52.8 + - - +
124G ILE* 3.0 24.2 - - + +
127G LEU* 4.2 16.7 - - + +
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Residues in contact with ILE 124 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119C ARG* 3.3 50.7 - - + +
122C GLU* 4.1 14.4 - - + -
123C GLN* 3.4 24.0 - - + +
126C LEU* 3.5 16.5 - - + +
120E GLU 3.3 7.2 + - - +
121E ILE* 2.9 18.7 + - + +
123E GLN* 1.3 77.4 - - - +
125E GLU* 1.3 55.1 + - - +
127E LEU* 3.2 0.6 + - - -
128E LYS* 2.7 36.5 + - + +
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Residues in contact with GLU 125 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121E ILE* 2.9 17.0 + - + +
122E GLU* 4.0 6.5 - - - +
124E ILE* 1.3 76.7 - - + +
126E LEU* 1.3 65.4 + - - +
127E LEU 3.1 0.4 - - - -
128E LYS* 4.3 5.3 - - - +
129E ARG* 3.2 26.2 + - - +
9G EDO 4.7 14.3 + - - +
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Residues in contact with LEU 126 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122E GLU 3.0 18.6 + - - +
123E GLN* 3.1 5.6 + - - +
125E GLU* 1.3 77.8 - - - +
127E LEU* 1.3 52.2 + - - +
129E ARG* 4.1 3.4 - - - +
130E ILE* 2.6 42.9 + - + +
124G ILE* 5.3 2.9 - - + +
127G LEU* 4.1 30.5 - - + +
128G LYS* 4.8 5.8 - - + +
131G HIS* 4.4 5.7 - - + +
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Residues in contact with LEU 127 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123B GLN* 5.8 0.4 - - - +
123C GLN* 4.3 35.9 - - + +
126C LEU* 3.8 15.5 - - + -
127C LEU* 4.3 19.5 - - + -
130C ILE* 3.9 15.3 - - + +
123E GLN* 2.8 21.7 + - + +
124E ILE 3.7 2.9 - - - +
126E LEU* 1.3 77.3 - - - +
128E LYS* 1.3 67.3 + - - +
129E ARG 3.0 1.3 - - - -
130E ILE* 3.8 14.5 - - + +
131E HIS* 2.9 27.3 + - - +
127G LEU* 4.0 25.6 - - + -
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Residues in contact with LYS 128 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126C LEU* 3.6 20.8 - - + +
124E ILE* 2.7 24.6 + - + +
125E GLU* 4.3 5.8 - - - +
127E LEU* 1.3 72.0 - - - +
129E ARG* 1.3 58.9 + - - +
131E HIS* 3.7 4.1 + - - +
132E ASP* 2.9 36.7 + - - +
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Residues in contact with ARG 129 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125E GLU 3.2 19.9 + - - +
126E LEU* 4.3 1.3 - - - +
127E LEU 3.0 0.4 - - - -
128E LYS* 1.3 76.4 - - - +
130E ILE* 1.3 59.4 + - - +
132E ASP* 3.3 8.4 + - - +
133E ASN* 3.0 28.2 + - - -
9G EDO 4.4 15.5 - - - -
131G HIS* 3.3 27.9 + - + +
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Residues in contact with ILE 130 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130C ILE* 4.7 8.1 - - + -
126E LEU 2.6 27.1 - - - +
127E LEU* 3.1 18.7 + - + +
129E ARG* 1.3 72.2 - - - +
131E HIS* 1.3 62.1 + - - +
133E ASN* 2.7 31.1 + - + +
134E LEU* 2.9 26.7 + - + +
127G LEU* 3.8 18.6 - - + +
130G ILE* 3.6 32.8 - - + +
131G HIS* 3.6 19.5 - - + +
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Residues in contact with HIS 131 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126C LEU* 5.2 7.3 - - + +
129C ARG* 3.7 65.8 + - + +
130C ILE* 3.7 21.0 - - + +
133C ASN* 5.4 5.2 - - + -
127E LEU 2.9 16.2 + - - +
128E LYS* 3.7 5.3 + - - +
130E ILE* 1.3 75.8 - - - +
132E ASP* 1.3 66.3 + - - +
133E ASN 2.8 10.7 + - - -
134E LEU* 2.8 9.1 + - + +
135E ILE* 2.8 55.8 + - + +
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Residues in contact with ASP 132 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128E LYS* 2.9 23.4 + - - +
129E ARG* 3.6 8.3 - - - +
130E ILE 3.2 0.6 - - - -
131E HIS* 1.3 99.9 + - - +
133E ASN* 1.3 58.5 + - - +
135E ILE* 2.9 35.7 - - + +
136E THR* 3.9 4.3 + - - -
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Residues in contact with ASN 133 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129E ARG 3.0 7.5 + - - -
130E ILE* 2.7 20.0 + - + +
132E ASP* 1.3 75.2 - - - +
134E LEU* 1.3 56.1 + - + +
135E ILE 2.9 8.5 + - - -
136E THR* 2.9 18.4 + - - -
137E ARG 3.6 8.7 + - - -
131G HIS* 3.4 41.4 + - - -
134G LEU* 3.3 41.3 - - + +
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Residues in contact with LEU 134 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130C ILE* 4.1 35.0 - - + +
133C ASN* 4.6 19.3 - - + +
134C LEU* 4.0 26.9 - - + -
130E ILE* 2.9 26.3 + - + +
131E HIS* 2.8 8.9 + - + +
133E ASN* 1.3 73.4 - - + +
135E ILE* 1.3 58.1 + - - +
136E THR 3.2 0.4 - - - -
137E ARG* 2.9 33.0 + - - +
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Residues in contact with ILE 135 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133C ASN* 5.9 1.8 - - - -
131E HIS* 2.8 47.2 + - + +
132E ASP* 2.9 33.9 - - + +
133E ASN 2.9 0.4 + - - -
134E LEU* 1.3 79.1 - - - +
136E THR* 1.3 61.0 + - - +
137E ARG* 3.2 3.6 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il