Contacts of the helix formed by residues 94 - 137 (chain B) in PDB entry 3MIW
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 94 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20B EDO 3.4 42.8 + - - +
95B ILE* 1.3 67.3 + - + +
96B GLU* 3.4 9.6 - - + +
97B GLN* 3.4 20.6 - - + +
98B GLN* 2.9 28.7 + - - +
94C MET* 3.9 15.7 - - + -
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Residues in contact with ILE 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94B MET* 1.3 78.4 - - + +
96B GLU* 1.3 65.3 + - - +
98B GLN* 3.2 11.0 + - - +
99B MET* 3.1 37.3 + - + +
94C MET* 3.9 31.0 - - + +
95C ILE* 4.9 8.1 - - + +
96C GLU* 4.9 2.5 - - + -
99C MET* 3.3 21.2 - - + +
95I ILE* 6.2 5.6 - - + -
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Residues in contact with GLU 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94B MET* 3.4 8.1 - - + +
95B ILE* 1.3 79.0 - - - +
97B GLN* 1.3 65.2 + - - +
99B MET* 3.3 15.6 + - - -
100B ASP* 3.3 15.5 - - - +
94I MET* 3.8 26.9 + - - +
95I ILE* 4.4 19.7 - - + +
98I GLN* 3.1 27.6 + - - +
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Residues in contact with GLN 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94B MET* 3.4 26.6 + - + +
95B ILE 3.2 0.6 - - - -
96B GLU* 1.3 81.2 - - - +
98B GLN* 1.3 63.8 + - + +
100B ASP* 3.5 22.3 + - - +
101B ARG* 3.8 8.0 + - - +
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Residues in contact with GLN 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94B MET 2.9 17.0 - - - +
95B ILE* 3.5 6.9 - - - +
96B GLU 3.2 0.6 - - - -
97B GLN* 1.3 78.8 - - + +
99B MET* 1.3 60.7 + - - +
100B ASP 3.2 0.9 + - - -
101B ARG* 3.2 28.0 + - - +
102B ILE* 3.4 12.8 + - + +
94C MET* 4.9 0.2 - - - -
96C GLU* 2.7 49.8 + - - +
99C MET* 3.0 39.0 - - + +
100C ASP* 4.2 7.9 - - - +
103C VAL* 5.3 2.6 - - + +
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Residues in contact with MET 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95B ILE* 3.1 21.0 + - + +
96B GLU* 3.3 8.0 + - - +
98B GLN* 1.3 75.2 - - - +
100B ASP* 1.3 55.6 + - - +
102B ILE* 2.9 33.5 - - + +
103B VAL* 3.0 13.5 + - - +
99C MET* 3.5 14.8 - - + -
95I ILE* 3.3 44.6 - - + +
98I GLN* 3.0 42.2 - - + +
99I MET* 4.3 18.4 - - - +
102I ILE* 4.9 9.6 - - + +
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Residues in contact with ASP 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96B GLU* 3.3 15.8 - - - +
97B GLN* 3.5 12.6 + - - +
98B GLN 3.2 0.6 - - - -
99B MET* 1.3 70.9 - - - +
101B ARG* 1.3 62.9 + - + +
102B ILE 2.9 1.6 - - - -
103B VAL* 2.6 28.7 + - - +
104B LYS* 2.7 14.1 + - - +
98I GLN* 2.8 30.0 + - - +
101I ARG* 4.8 9.2 + - - -
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Residues in contact with ARG 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18B EDO 3.2 27.1 + - - -
97B GLN 3.8 6.9 + - - +
98B GLN* 3.2 21.1 + - - +
100B ASP* 1.3 78.2 - - + +
102B ILE* 1.3 53.3 + - - +
104B LYS* 3.3 8.3 + - - +
105B GLU* 2.8 41.5 + - + +
100C ASP* 5.1 4.9 - - - +
103C VAL* 3.4 41.7 - - + +
107C ARG* 3.0 31.7 - - - +
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Residues in contact with ILE 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98B GLN* 3.4 8.3 + - + +
99B MET* 2.9 25.4 - - + +
101B ARG* 1.3 79.6 - - - +
103B VAL* 1.3 50.9 + - - +
105B GLU* 3.2 7.3 + - - +
106B MET* 2.7 51.3 + - + +
99C MET* 4.7 22.4 - - + +
102C ILE* 5.1 16.6 - - + -
103C VAL* 5.1 12.3 - - + +
106C MET* 4.1 16.1 - - - +
102I ILE* 3.6 28.5 - - + -
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Residues in contact with VAL 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99B MET 3.0 18.9 + - - +
100B ASP* 2.6 20.5 + - + +
102B ILE* 1.3 70.6 - - - +
104B LYS* 1.3 62.2 + - - +
106B MET* 3.1 9.3 + - - +
107B ARG* 3.0 60.8 + - - +
98I GLN* 4.4 15.5 - - + +
101I ARG* 3.6 26.0 - - + +
102I ILE* 4.4 17.9 - - + -
105I GLU* 4.0 4.4 - - - +
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Residues in contact with LYS 104 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41B EDO 5.6 12.6 + - - -
100B ASP 2.7 13.6 + - - +
101B ARG* 3.7 11.7 - - - +
103B VAL* 1.3 74.2 - - - +
105B GLU* 1.3 71.4 + - - +
107B ARG* 3.2 9.3 + - - +
108B ARG* 2.8 40.7 + - + +
107C ARG* 5.5 3.8 - - - +
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Residues in contact with GLU 105 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101B ARG* 2.8 27.2 + - + +
102B ILE* 3.4 7.6 - - - +
104B LYS* 1.3 95.9 + - + +
106B MET* 1.3 58.8 + - - +
108B ARG* 3.9 5.2 - - - +
109B GLN* 3.0 31.0 + - - +
103C VAL* 4.8 8.1 - - + -
106C MET* 4.1 18.0 - - + +
107C ARG* 3.1 52.2 + - + +
110C LEU* 3.8 20.6 - - - +
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Residues in contact with MET 106 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102B ILE* 2.7 33.9 + - + +
103B VAL* 3.1 10.0 + - - +
105B GLU* 1.3 76.9 - - - +
107B ARG* 1.3 59.2 + - - +
109B GLN* 4.0 4.3 - - - +
110B LEU* 3.2 26.3 + - - +
106C MET* 3.4 25.1 - - + +
102I ILE* 3.8 16.8 - - + +
105I GLU* 3.5 20.6 - - + +
106I MET* 3.2 53.4 - - + +
109I GLN* 4.3 17.1 - - + +
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Residues in contact with ARG 107 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103B VAL* 3.0 28.6 + - - +
104B LYS* 3.2 8.2 + - - +
106B MET* 1.3 78.7 - - - +
108B ARG* 1.3 49.2 + - - +
109B GLN 3.1 4.9 - - - -
110B LEU* 4.4 6.4 - - + +
111B GLU* 2.5 39.2 + - - +
101I ARG* 2.8 43.6 - - - +
104I LYS* 5.2 2.0 - - - +
105I GLU* 2.7 30.8 + - - +
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Residues in contact with ARG 108 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104B LYS* 2.8 28.7 + - + +
105B GLU* 3.9 6.3 + - - +
107B ARG* 1.3 77.6 - - - +
109B GLN* 1.3 57.5 + - - +
111B GLU* 3.8 13.8 - - - +
112B MET* 3.4 13.3 + - - +
110C LEU* 3.2 30.9 - - + +
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Residues in contact with GLN 109 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105B GLU 3.0 14.2 + - - +
106B MET* 4.1 3.6 - - - +
107B ARG 3.1 0.2 - - - -
108B ARG* 1.3 76.6 - - - +
110B LEU* 1.3 58.3 + - - +
111B GLU 3.0 0.7 - - - -
112B MET* 2.8 23.9 + - - +
113B ILE* 3.0 12.9 + - - +
106C MET* 3.6 43.5 + - - +
109C GLN* 2.8 36.5 + - - +
110C LEU* 3.6 13.7 - - + -
113C ILE* 3.6 23.2 - - + +
109G GLN* 4.6 0.2 + - - -
109I GLN* 2.7 30.3 + - - +
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Residues in contact with LEU 110 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106B MET 3.2 15.7 + - - +
107B ARG* 4.4 5.8 - - + +
109B GLN* 1.3 79.5 - - - +
111B GLU* 1.3 67.3 + - + +
113B ILE* 3.2 17.7 + - - +
114B ASP* 3.2 10.7 + - + +
105I GLU* 4.1 13.0 - - + +
108I ARG* 3.7 15.5 - - + +
109I GLN* 3.0 54.9 - - + +
112I MET* 3.9 23.2 - - + +
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Residues in contact with GLU 111 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107B ARG 2.5 25.6 + - - +
108B ARG* 3.8 12.5 - - - +
110B LEU* 1.3 82.9 - - + +
112B MET* 1.3 67.9 + - - +
114B ASP* 3.2 16.7 + - - +
115B LYS* 3.4 18.5 + - - +
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Residues in contact with MET 112 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108B ARG 3.4 12.3 + - - +
109B GLN 2.8 12.9 + - - +
111B GLU* 1.3 86.4 - - - +
113B ILE* 1.3 54.1 + - - -
115B LYS* 3.2 30.2 - - + +
116B LEU* 3.1 22.7 + - - +
110C LEU* 3.7 16.6 - - + -
113C ILE* 3.2 29.2 - - + -
114C ASP* 3.2 45.8 - - + +
117C THR* 4.1 7.6 - - - -
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Residues in contact with ILE 113 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109B GLN 3.0 12.5 + - - +
110B LEU* 3.2 9.6 + - - +
112B MET* 1.3 73.2 - - - +
114B ASP* 1.3 66.6 + - - +
115B LYS 3.1 1.3 - - - -
116B LEU* 4.2 9.6 - - + +
117B THR* 2.8 36.2 + - - +
113C ILE* 4.6 21.5 - - + -
109I GLN* 4.1 30.5 - - + +
112I MET* 3.6 31.9 - - + +
113I ILE* 4.7 24.0 - - + +
116I LEU* 4.9 9.4 - - + -
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Residues in contact with ASP 114 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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110B LEU* 3.2 7.6 + - + +
111B GLU* 3.2 12.1 + - + +
113B ILE* 1.3 76.2 - - - +
115B LYS* 1.3 65.0 + - - +
117B THR* 3.4 6.7 + - - -
118B THR* 3.2 23.6 + - - -
112I MET* 3.9 26.0 - - + +
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Residues in contact with LYS 115 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111B GLU* 3.4 14.4 + - - +
112B MET* 3.2 32.7 + - - +
114B ASP* 1.3 81.6 + - - +
116B LEU* 1.3 58.0 + - - +
118B THR* 2.9 29.5 + - - +
119B ARG* 3.5 16.7 + - - +
117C THR* 4.2 20.4 - - + -
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Residues in contact with LEU 116 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112B MET 3.1 10.7 + - - +
113B ILE* 3.2 13.7 + - + +
115B LYS* 1.3 72.7 - - - +
117B THR* 1.3 57.9 + - - +
118B THR 2.9 5.2 - - - -
119B ARG* 2.9 24.0 + - - +
120B GLU* 3.1 12.4 + - - +
113C ILE* 4.9 10.1 - - + -
116C LEU* 4.0 21.1 - - + +
117C THR* 3.3 33.9 - - + +
120C GLU* 3.3 35.0 - - + +
116I LEU* 3.5 32.3 - - + -
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Residues in contact with THR 117 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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113B ILE* 2.8 23.5 + - - +
114B ASP* 3.8 9.0 - - - -
116B LEU* 1.3 76.8 - - - +
118B THR* 1.3 58.4 + - - +
120B GLU* 3.5 2.0 + - - +
121B ILE* 3.1 37.6 + - + +
112I MET* 4.1 5.5 + - + +
115I LYS* 4.1 9.0 - - + -
116I LEU* 3.0 47.2 - - + +
119I ARG* 4.1 16.6 - - + +
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Residues in contact with THR 118 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114B ASP* 3.2 14.4 + - - -
115B LYS* 2.9 15.7 + - - -
116B LEU 2.9 0.4 - - - -
117B THR* 1.3 77.6 - - - +
119B ARG* 1.3 96.5 + - - +
121B ILE* 3.4 11.8 + - - +
122B GLU* 3.0 32.1 + - + +
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Residues in contact with ARG 119 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115B LYS* 4.0 18.8 + - - +
116B LEU* 2.9 15.5 + - - +
118B THR* 1.3 100.7 - - - +
120B GLU* 1.3 60.1 + - - +
122B GLU* 2.7 49.5 + - - +
123B GLN* 2.9 16.9 + - + +
117C THR* 4.4 13.8 - - + +
120C GLU* 3.7 33.4 - - + +
121C ILE* 4.3 35.7 - - - +
124C ILE* 5.4 0.9 - - + -
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Residues in contact with GLU 120 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116B LEU* 3.1 6.7 + - - +
117B THR* 3.5 9.4 - - - +
119B ARG* 1.3 79.6 - - - +
121B ILE* 1.3 56.0 + - - +
123B GLN* 3.2 6.9 - - - +
124B ILE* 3.0 16.2 + - - +
120C GLU* 2.6 38.0 - - - +
116I LEU* 3.4 34.3 - - + +
119I ARG* 4.0 16.4 - - + -
120I GLU* 2.4 31.3 - - - +
123I GLN* 2.4 38.0 + - - +
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Residues in contact with ILE 121 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117B THR* 3.1 23.2 + - + +
118B THR* 3.7 10.8 - - - +
119B ARG 3.1 0.6 - - - -
120B GLU* 1.3 74.1 - - - +
122B GLU* 1.3 63.2 + - + +
124B ILE* 2.8 37.1 - - + +
125B GLU* 3.3 15.9 + - - +
119I ARG* 3.7 42.6 - - + +
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Residues in contact with GLU 122 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118B THR* 3.0 19.2 - - + +
119B ARG* 2.7 52.0 + - - +
121B ILE* 1.3 70.9 - - - +
123B GLN* 1.3 62.3 + - - +
125B GLU* 2.9 35.9 - - - +
126B LEU* 3.1 10.9 + - - +
121C ILE* 5.6 1.9 - - - +
124C ILE* 3.6 26.0 - - + +
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Residues in contact with GLN 123 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119B ARG 2.9 17.0 + - - +
120B GLU* 3.2 15.1 - - - +
122B GLU* 1.3 77.4 - - - +
124B ILE* 1.3 57.4 + - - +
126B LEU* 3.0 3.6 + - - +
127B LEU* 2.7 34.3 + - + +
120C GLU* 2.8 24.8 + - - +
123C GLN* 2.6 48.8 + - - +
124C ILE* 3.4 19.7 - - + -
127C LEU* 3.8 14.5 - - + +
123G GLN* 5.5 0.5 - - - +
123I GLN* 3.2 20.4 + - - +
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Residues in contact with ILE 124 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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120B GLU 3.0 15.7 - - - +
121B ILE* 2.8 45.5 - - + +
123B GLN* 1.3 76.1 - - - +
125B GLU* 1.3 65.8 + - + +
127B LEU* 3.3 7.6 + - - +
128B LYS* 3.1 19.8 + - - +
119I ARG* 4.1 13.0 - - + +
122I GLU* 3.2 29.8 - - + +
123I GLN* 3.1 31.2 - - + +
126I LEU* 3.6 9.9 - - + +
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Residues in contact with GLU 125 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121B ILE* 3.6 17.8 - - - +
122B GLU* 2.9 33.9 - - - +
124B ILE* 1.3 84.7 - - + +
126B LEU* 1.3 67.3 + - + +
128B LYS* 3.3 7.5 + - - +
129B ARG* 3.0 22.7 + - - +
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Residues in contact with LEU 126 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122B GLU 3.1 11.9 + - - +
123B GLN 3.0 8.6 + - - +
125B GLU* 1.3 80.7 - - + +
127B LEU* 1.3 64.1 + - - +
129B ARG* 2.9 12.8 + - + +
130B ILE* 2.9 27.2 + - - +
1C EDO 5.6 7.0 - - - +
124C ILE* 3.9 22.4 - - + +
127C LEU* 3.4 32.5 - - + +
128C LYS* 3.4 40.6 - - + +
131C HIS* 4.9 11.4 - - + +
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Residues in contact with LEU 127 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123B GLN* 2.7 22.0 + - + +
124B ILE* 3.5 2.7 - - - +
126B LEU* 1.3 73.1 - - - +
128B LYS* 1.3 56.6 + - - +
130B ILE* 3.1 11.6 + - + +
131B HIS* 2.9 27.0 + - - +
127C LEU* 3.9 26.5 - - + -
123G GLN* 5.1 0.4 - - - +
123I GLN* 3.2 52.7 - - + +
126I LEU* 3.5 19.1 - - + -
127I LEU* 3.5 27.8 - - + -
130I ILE* 3.7 9.0 - - + +
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Residues in contact with LYS 128 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124B ILE 3.1 6.6 + - - +
125B GLU* 3.7 9.2 - - - +
127B LEU* 1.3 75.8 - - - +
129B ARG* 1.3 65.1 + - - +
131B HIS* 3.9 6.8 - - - +
132B ASP* 3.2 24.9 + - - +
126I LEU* 3.3 23.0 - - + +
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Residues in contact with ARG 129 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B GLU 3.0 13.4 + - - +
126B LEU* 2.9 17.8 + - + +
128B LYS* 1.3 77.0 - - - +
130B ILE* 1.3 59.8 + - - +
132B ASP* 4.2 4.0 - - - +
133B ASN* 3.5 16.1 + - - +
131C HIS* 3.2 34.4 + - + +
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Residues in contact with ILE 130 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B LEU 2.9 21.4 + - - +
127B LEU* 3.4 12.3 - - + +
129B ARG* 1.3 76.0 - - - +
131B HIS* 1.3 64.2 + - - +
133B ASN* 3.3 6.6 + - - +
134B LEU* 3.3 26.2 + - + +
127C LEU* 3.9 39.7 - - + +
130C ILE* 4.2 14.4 - - + -
131C HIS* 3.6 23.8 - - + -
134C LEU* 3.4 23.9 - - + +
130I ILE* 4.8 10.1 - - + -
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Residues in contact with HIS 131 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127B LEU 2.9 12.5 + - - +
128B LYS* 3.5 9.1 + - - +
130B ILE* 1.3 74.3 - - - +
132B ASP* 1.3 62.7 + - - +
134B LEU* 2.9 29.3 + - + +
135B ILE* 3.2 30.7 + - + +
126I LEU* 4.4 8.5 - - + +
129I ARG* 3.3 39.3 + - + +
130I ILE* 3.6 31.4 - - + +
133I ASN* 5.0 5.6 + - - -
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Residues in contact with ASP 132 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B LYS 3.2 14.9 + - - +
129B ARG* 4.2 4.7 - - - +
131B HIS* 1.3 75.0 + - - +
133B ASN* 1.3 57.8 + - - +
134B LEU 2.9 10.0 + - - -
135B ILE* 3.3 29.5 + - + +
136B THR* 3.9 9.0 + - - -
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Residues in contact with ASN 133 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B ARG 3.5 17.1 + - - +
130B ILE* 3.3 9.8 + - - +
131B HIS 3.2 0.4 - - - -
132B ASP* 1.3 76.7 - - - +
134B LEU* 1.3 57.5 + - - +
136B THR* 4.5 6.6 - - - -
137B ARG 3.6 17.8 + - - +
131C HIS* 4.4 6.9 + - + +
134C LEU* 2.8 48.2 + - - +
135C ILE* 3.7 22.6 - - - +
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Residues in contact with LEU 134 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130B ILE* 3.4 17.5 - - + +
131B HIS* 2.9 13.7 - - + +
132B ASP 2.9 0.2 - - - -
133B ASN* 1.3 79.9 - - - +
135B ILE* 1.3 66.5 + - - +
136B THR 3.0 3.4 + - - -
137B ARG* 3.4 22.8 + - - +
134C LEU* 4.6 16.2 - - + -
130I ILE* 4.0 46.9 - - + +
133I ASN* 3.9 25.2 + - + +
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Residues in contact with ILE 135 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131B HIS* 3.7 32.1 - - + +
132B ASP* 3.7 17.7 - - + +
134B LEU* 1.3 78.6 - - - +
136B THR* 1.3 63.9 + - - +
133I ASN* 4.3 10.3 - - - +
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Residues in contact with THR 136 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39B EDO 3.6 23.4 - - - +
132B ASP 3.9 10.0 + - - -
133B ASN* 4.9 5.4 - - - -
134B LEU 3.0 2.1 - - - -
135B ILE* 1.3 83.2 - - - +
137B ARG* 1.3 67.4 + - - +
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Residues in contact with ARG 137 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39B EDO 3.1 28.9 - - - +
133B ASN* 3.6 18.5 + - - +
134B LEU* 3.4 20.8 + - - +
136B THR* 1.3 86.5 - - + +
134C LEU* 4.7 16.0 - - - +
137C ARG 4.9 1.4 - - - +
138C PRO* 3.3 26.7 - - - +
139C VAL 3.8 9.6 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il