Contacts of the helix formed by residues 25 - 56 (chain A) in PDB entry 3OMA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 25 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A SER* 3.3 3.0 + - - +
24A THR* 1.3 80.5 + - - +
26A HIS* 1.3 70.2 + - - +
27A LYS* 2.9 50.3 + - - +
28A ASP* 3.1 31.5 + - - +
29A ILE* 3.1 12.1 + - - +
131A PRO 4.8 4.0 + - - -
132A ASP* 3.8 16.2 + - - +
548A GLU 3.5 19.6 + - - -
549A HIS* 5.0 8.1 - - - +
550A THR 5.9 0.2 - - - +
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Residues in contact with HIS 26 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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24A THR 3.4 0.8 + - - -
25A ASN* 1.3 77.7 - - - +
27A LYS* 1.3 79.8 + - + +
29A ILE* 4.0 0.9 - - - -
30A GLY* 2.9 24.8 + - - -
121A ASN* 2.8 35.6 + - - +
122A TYR 3.2 18.7 + - - -
125A PRO* 3.3 22.9 - - + +
126A LEU* 3.9 15.7 - - + +
131A PRO 3.7 20.2 + - - -
132A ASP* 3.3 29.4 + - - +
133A MET* 4.0 17.0 - - + -
139A ASN* 4.1 12.1 - - - +
550A THR* 4.3 1.2 + - - -
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Residues in contact with LYS 27 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A DMU 5.7 1.3 - - - +
25A ASN* 2.9 31.6 + - - +
26A HIS* 1.3 99.2 + - + +
28A ASP* 1.3 62.4 + - - +
30A GLY 3.4 0.3 + - - -
31A VAL* 3.0 28.1 + - - +
122A TYR* 3.3 52.9 - - + +
126A LEU* 4.8 4.9 - - + -
546A PRO* 4.2 23.1 - - + -
547A PRO 3.7 17.7 + - - -
548A GLU* 3.1 23.4 + - - +
550A THR* 4.4 7.3 + - - -
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Residues in contact with ASP 28 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A DMU 4.4 17.8 + - - -
20A TRP* 4.6 9.0 - - + +
23A SER* 2.6 39.4 + - - +
25A ASN* 3.1 15.5 + - - +
27A LYS* 1.3 76.2 - - - +
29A ILE* 1.3 61.6 + - + +
31A VAL* 3.3 8.6 + - - +
32A LEU* 3.0 33.8 + - - +
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Residues in contact with ILE 29 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A SER* 3.6 24.2 - - - +
24A THR 3.7 22.7 - - - +
25A ASN 3.1 7.9 + - - +
26A HIS 4.0 2.9 - - - +
28A ASP* 1.3 74.6 - - + +
30A GLY* 1.3 65.0 + - - +
32A LEU* 3.1 13.8 + - + +
33A TYR* 2.9 49.2 + - + -
121A ASN* 4.0 10.5 - - - +
139A ASN* 3.7 21.5 - - + +
140A ASN* 3.5 32.1 - - - +
143A TYR* 4.5 5.6 - - + -
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Residues in contact with GLY 30 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A HIS 2.9 19.4 + - - -
27A LYS 3.7 1.8 - - - -
29A ILE* 1.3 76.3 - - - +
31A VAL* 1.3 60.3 + - - +
34A LEU* 3.1 22.3 + - - +
117A GLY 3.7 7.6 - - - -
118A GLY* 3.3 32.8 - - - -
121A ASN* 3.9 1.7 - - - +
122A TYR* 4.2 7.0 - - - -
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Residues in contact with VAL 31 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A DMU 3.9 48.5 - - + +
27A LYS 3.0 20.3 + - - +
28A ASP* 3.6 7.2 - - - +
29A ILE 3.2 0.4 - - - -
30A GLY* 1.3 71.9 - - - +
32A LEU* 1.3 67.6 + - + +
34A LEU* 3.3 8.0 + - - +
35A PHE* 3.1 49.3 + - + -
122A TYR* 4.0 15.5 - - + -
443A MET* 5.0 3.4 - - - -
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Residues in contact with LEU 32 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A TRP* 3.5 34.8 - - + +
21A PHE* 3.6 40.8 - - + +
28A ASP 3.0 18.0 + - - +
29A ILE* 3.1 18.8 + - + +
31A VAL* 1.3 76.1 - - + +
33A TYR* 1.3 63.4 + - - +
35A PHE* 3.5 5.6 + - + +
36A THR* 2.6 32.7 + - - +
140A ASN* 5.5 1.3 - - - +
143A TYR* 3.7 32.8 - - + +
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Residues in contact with TYR 33 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A ILE* 2.9 40.4 + - + -
30A GLY 3.6 2.7 - - - +
32A LEU* 1.3 74.7 - - - +
34A LEU* 1.3 53.5 + - - +
36A THR* 3.9 1.2 - - - -
37A GLY* 2.8 34.1 + - - -
113A PRO* 3.3 36.7 - - + +
114A ALA* 4.6 0.5 - - - -
117A GLY* 3.2 32.1 - - - +
118A GLY 3.6 0.9 - - - +
121A ASN* 3.7 10.3 - - - -
142A SER* 2.9 38.5 + - - -
143A TYR* 3.8 15.3 - + + -
146A TYR* 3.6 33.7 - + + -
200A SER* 3.2 9.8 + - - -
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Residues in contact with LEU 34 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 3.7 14.3 - - + +
7A DMU 3.6 43.7 - - + +
30A GLY 3.1 14.4 + - - +
31A VAL* 3.5 11.7 - - - +
33A TYR* 1.3 79.0 - - - +
35A PHE* 1.3 63.3 - - - +
38A GLY 3.1 16.3 + - - -
114A ALA* 3.6 32.1 - - + +
118A GLY* 4.1 5.8 - - - -
119A PHE* 3.9 38.6 - - + -
122A TYR* 6.4 0.7 - - + -
436A ILE* 5.2 1.8 - - + -
443A MET* 4.1 10.1 - - + -
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Residues in contact with PHE 35 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A DMU 4.0 44.7 - - + +
31A VAL* 3.1 42.5 + - + +
32A LEU* 4.0 7.0 - - + +
34A LEU* 1.3 80.0 - - - +
36A THR* 1.3 60.7 + - - +
38A GLY* 3.3 1.4 + - - -
39A LEU* 3.0 26.5 + - - +
515A ILE* 5.1 2.9 - - + -
519A LEU* 3.9 27.8 - - + -
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Residues in contact with THR 36 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A LEU* 2.6 23.3 + - - +
35A PHE* 1.3 77.6 - - - +
37A GLY* 1.3 65.2 + - - +
39A LEU* 3.2 12.7 + - + +
40A VAL* 2.9 35.2 + - + +
143A TYR* 2.8 23.0 + - + +
146A TYR* 3.5 29.6 - - + +
147A VAL* 4.7 6.7 - - + -
150A THR* 5.6 2.5 - - + +
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Residues in contact with GLY 37 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 3.9 7.4 - - - +
33A TYR 2.8 17.5 + - - -
34A LEU 4.0 1.3 - - - -
36A THR* 1.3 76.4 - - - +
38A GLY* 1.3 54.5 + - - +
40A VAL* 4.1 0.3 - - - +
41A GLY* 2.8 27.0 + - - -
109A PHE 4.3 1.3 - - - -
110A VAL* 3.7 23.7 - - - +
113A PRO* 5.0 1.1 - - - -
114A ALA* 4.8 3.8 - - - -
146A TYR* 3.3 14.7 + - - -
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Residues in contact with GLY 38 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 3.7 26.8 - - - +
7A DMU 4.2 11.2 - - - -
34A LEU 3.1 14.3 + - - -
35A PHE 3.3 4.2 + - - -
36A THR 3.1 0.4 - - - -
37A GLY* 1.3 73.9 - - - +
39A LEU* 1.3 58.8 + - - +
41A GLY* 3.4 1.4 + - - -
42A LEU* 2.9 28.1 + - - +
508A PHE* 4.3 7.1 - - - -
512A LEU* 5.4 2.9 - - - +
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Residues in contact with LEU 39 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35A PHE 3.0 16.5 + - - +
36A THR* 3.2 11.0 + - + +
38A GLY* 1.3 73.7 - - - +
40A VAL* 1.3 69.4 + - + +
42A LEU* 3.2 21.1 + - + +
43A ILE* 3.1 36.3 + - + +
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Residues in contact with VAL 40 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36A THR* 2.9 26.6 + - + +
37A GLY 4.1 0.2 - - - +
39A LEU* 1.3 76.7 - - + +
41A GLY* 1.3 62.2 + - - +
43A ILE* 3.2 13.4 + - + +
44A SER* 3.0 27.5 + - - -
105A LEU* 3.9 30.7 - - + -
109A PHE* 3.6 22.2 - - + +
110A VAL* 3.7 8.7 - - + -
146A TYR* 3.8 10.8 - - - +
150A THR* 3.7 23.1 - - + -
154A VAL* 6.2 0.4 - - + -
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Residues in contact with GLY 41 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 4.2 11.9 - - - -
37A GLY 2.8 19.4 + - - -
38A GLY 3.4 2.9 + - - -
40A VAL* 1.3 76.8 - - - +
42A LEU* 1.3 54.7 + - - +
44A SER* 3.4 2.6 + - - -
45A VAL* 2.9 38.1 + - - +
106A MET* 4.2 0.2 - - - +
110A VAL* 3.6 20.0 - - - +
508A PHE* 4.7 2.7 - - - -
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Residues in contact with LEU 42 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A GLY 2.9 13.9 + - - +
39A LEU* 3.2 24.0 + - + +
41A GLY* 1.3 72.2 - - - +
43A ILE* 1.3 63.1 + - + +
45A VAL* 3.8 1.4 - - - +
46A ALA* 2.9 31.2 + - + +
505A PHE* 4.3 17.9 - - + -
508A PHE* 3.9 29.2 - - + -
509A LEU* 4.3 8.7 - - + -
512A LEU* 4.0 22.7 - - + -
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Residues in contact with ILE 43 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39A LEU* 3.1 29.6 + - + +
40A VAL* 3.2 17.0 + - + +
42A LEU* 1.3 78.4 - - + +
44A SER* 1.3 62.1 + - - +
46A ALA* 3.2 8.6 + - - +
47A PHE* 3.1 46.9 + - + -
105A LEU* 4.1 11.4 - - + -
154A VAL* 5.6 13.2 - - + -
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Residues in contact with SER 44 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40A VAL 3.0 16.3 + - - -
41A GLY* 3.9 1.1 - - - -
43A ILE* 1.3 75.5 - - - +
45A VAL* 1.3 63.5 + - - +
47A PHE* 3.2 14.0 - - - +
48A THR* 3.2 22.3 + - - +
102A HIS* 2.9 42.6 + - - -
105A LEU* 3.9 20.0 - - - -
106A MET* 3.4 18.5 - - - +
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Residues in contact with VAL 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 3.7 58.3 - - + +
41A GLY 2.9 23.0 + - - +
42A LEU* 3.9 4.5 - - - +
44A SER* 1.3 71.9 - - - +
46A ALA* 1.3 65.4 + - - +
48A THR* 2.6 25.5 + - - -
49A VAL* 3.1 8.4 + - + +
106A MET* 3.9 11.7 - - + -
505A PHE* 3.5 30.7 - - + -
508A PHE* 4.6 7.6 - - + -
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Residues in contact with ALA 46 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A LEU* 2.9 21.5 + - + +
43A ILE* 3.2 8.9 + - - +
45A VAL* 1.3 76.8 - - - +
47A PHE* 1.3 61.0 + - + +
49A VAL* 3.2 12.5 + - - +
50A TYR 3.2 17.3 + - - -
505A PHE* 4.6 13.4 - - + -
1013A TRD 3.9 22.0 - - + +
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Residues in contact with PHE 47 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43A ILE* 3.1 32.6 + - + -
44A SER* 3.2 10.1 - - - +
45A VAL 3.2 0.2 - - - -
46A ALA* 1.3 76.7 - - + +
48A THR* 1.3 56.5 + - - +
50A TYR* 3.2 5.9 + - - +
51A MET* 2.8 33.0 + - - +
98A MET* 3.8 37.0 - - + +
101A GLY* 4.0 9.6 - - - -
102A HIS* 3.7 30.1 - - + -
105A LEU* 3.9 19.1 - - + -
157A LEU* 3.7 31.2 - - + -
1013A TRD 4.3 12.8 - - + -
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Residues in contact with THR 48 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 2.9 46.5 + - + +
44A SER 3.3 4.7 - - - +
45A VAL* 2.6 20.1 + - - +
47A PHE* 1.3 72.7 - - - +
49A VAL* 1.3 61.3 + - - +
51A MET* 3.5 9.7 - - - +
52A ARG* 2.8 36.8 + - - +
102A HIS* 3.0 48.9 - - + +
501A ALA* 5.7 0.2 - - - -
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Residues in contact with VAL 49 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 5.7 0.7 - - - +
45A VAL* 3.1 15.0 + - + +
46A ALA* 3.4 9.4 - - - +
48A THR* 1.3 77.7 - - - +
50A TYR* 1.3 58.2 + - - +
52A ARG* 3.3 4.7 + - - -
53A MET* 2.8 39.5 + - - +
501A ALA* 4.7 7.4 - - + +
502A PHE* 3.8 8.4 - - + -
505A PHE* 3.4 47.6 - - + -
552A TRD 4.9 6.3 - - + -
1005A DMU 4.1 25.4 - - + -
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Residues in contact with TYR 50 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46A ALA 3.2 9.4 + - - +
47A PHE 3.2 8.3 + - - +
49A VAL* 1.3 78.9 - - - +
51A MET* 1.3 61.6 + - - +
53A MET* 3.2 15.2 + - + +
54A GLU* 3.2 21.1 + - - +
62A PHE* 3.5 30.7 + + + +
63A MET* 3.4 35.9 - - + +
79A SER* 2.6 46.7 + - - -
80A LEU* 3.8 23.8 - - + -
94A LEU* 4.5 3.8 - - + +
98A MET* 3.9 17.5 - - + -
1013A TRD 3.9 31.8 - - + +
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Residues in contact with MET 51 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 3.6 50.5 - - + +
47A PHE* 2.8 26.2 + - - +
48A THR* 3.5 14.1 - - - +
50A TYR* 1.3 73.8 - - - +
52A ARG* 1.3 59.4 + - + +
54A GLU 3.3 1.9 + - - -
55A LEU* 2.9 24.4 + - - +
63A MET* 4.7 0.7 - - - -
95A TRP* 3.4 26.9 - - + -
98A MET* 4.2 15.5 - - + +
99A ILE* 3.5 35.9 - - + -
102A HIS* 4.0 22.0 - - + -
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Residues in contact with ARG 52 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 2.9 37.5 + - + +
48A THR 2.8 25.0 + - - +
49A VAL 3.3 3.1 + - - +
51A MET* 1.3 70.3 - - + +
53A MET* 1.3 60.2 + - - +
55A LEU* 3.5 28.3 - - - +
56A MET* 3.0 13.5 + - - +
414A TYR* 4.4 3.0 - - - -
467A THR* 4.8 0.4 - - - -
471A GLN* 3.4 15.4 - - - +
494A ASN* 3.0 45.5 + - - -
497A SER* 3.3 16.5 + - - -
498A SER* 2.6 51.8 + - - +
501A ALA* 3.5 29.4 - - + -
502A PHE* 4.1 6.1 - - + -
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Residues in contact with MET 53 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A VAL* 2.8 31.6 + - - +
50A TYR* 3.2 27.8 + - + +
52A ARG* 1.3 76.1 - - - +
54A GLU* 1.3 61.6 + - - +
56A MET* 3.4 20.0 + - - +
62A PHE* 3.4 51.0 - - + -
80A LEU* 3.6 21.8 - - + +
502A PHE* 3.9 20.4 - - + -
552A TRD 4.1 20.0 - - + -
1005A DMU 4.0 21.5 + - + -
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Residues in contact with GLU 54 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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50A TYR 3.2 8.3 + - - +
51A MET 3.8 6.5 - - - +
53A MET* 1.3 79.6 - - - +
55A LEU* 1.3 59.6 + - - +
56A MET 3.5 0.2 + - - -
57A ALA 3.4 1.0 - - - +
60A VAL* 3.4 12.3 - - - +
61A GLN* 3.0 19.8 + - - +
62A PHE* 2.8 32.1 + - + +
63A MET* 2.9 24.5 + - + -
95A TRP* 4.0 13.5 - - + -
484A ILE* 3.8 30.4 - - + +
486A TYR* 4.9 0.7 - - - -
553A CA 2.3 57.0 - - - -
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Residues in contact with LEU 55 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A HEA 4.4 3.4 - - - -
51A MET 2.9 11.3 + - - +
52A ARG* 3.5 33.4 + - - +
53A MET 3.3 0.2 - - - -
54A GLU* 1.3 72.4 - - - +
56A MET* 1.3 57.2 + - - +
57A ALA 3.2 3.6 - - - -
95A TRP* 3.4 26.7 - - + -
414A TYR* 3.3 27.4 - - + +
479A MET* 4.3 4.7 - - + -
483A TYR 3.5 22.4 - - - +
484A ILE 4.0 10.3 - - - +
486A TYR* 2.6 51.7 + - + -
494A ASN* 3.3 12.3 - - - +
498A SER* 4.0 1.8 - - - -
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Residues in contact with MET 56 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A ARG 3.0 13.9 + - - +
53A MET* 3.4 21.3 - - - +
54A GLU 3.3 1.2 - - - -
55A LEU* 1.3 78.7 - - - +
57A ALA* 1.3 58.5 + - + +
58A PRO* 4.8 0.2 - - - +
62A PHE* 4.9 1.1 - - + -
486A TYR* 3.6 2.9 + - - -
491A ALA 4.3 1.6 - - - +
494A ASN 4.2 1.3 - - - -
495A PHE* 3.5 51.3 + - + +
498A SER* 3.4 18.4 - - - +
499A LEU* 5.3 1.6 - - - -
502A PHE* 4.0 19.1 - - + -
1005A DMU 3.6 51.6 - - + +
1015A TRD 4.5 11.7 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il