Contacts of the helix formed by residues 1402 - 1440 (chain B) in PDB entry 3QBV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP1402 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1238B ARG* 2.3 38.1 + - - +
1313B LYS 3.7 5.2 - - - +
1314B MET* 3.7 7.0 - - + +
1315B ILE* 3.0 22.8 + - - +
1316B GLY* 2.9 27.1 + - - -
1317B ASP 4.2 0.5 + - - -
1392B ILE* 5.0 0.2 - - - +
1396B THR* 4.4 0.2 - - - -
1400B HIS* 3.0 10.6 - - + -
1401B PRO* 1.3 78.0 - - - +
1403B HIS* 1.3 60.5 + - - +
1404B SER 3.4 2.0 - - - -
1405B HIS* 3.4 7.1 + - - +
1406B LEU* 2.9 37.8 + - + +
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Residues in contact with HIS1403 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1393B LEU* 3.7 22.5 - - + +
1396B THR* 3.0 33.2 + - + +
1397B PRO 3.3 14.8 + - - +
1398B GLU* 3.5 38.6 + - + +
1400B HIS 3.1 14.5 + - - +
1402B ASP* 1.3 79.0 - - - +
1404B SER* 1.3 66.9 + - - +
1406B LEU* 3.3 2.3 + - - +
1407B LYS* 2.9 25.7 + - + +
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Residues in contact with SER1404 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1400B HIS 4.6 1.0 + - - -
1401B PRO 5.2 1.9 - - - -
1402B ASP 3.4 0.4 - - - +
1403B HIS* 1.3 81.2 - - - +
1405B HIS* 1.3 67.0 + - - +
1407B LYS* 3.1 7.9 + - - +
1408B HIS* 3.0 48.3 + - - -
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Residues in contact with HIS1405 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1314B MET* 3.6 30.3 - - + +
1316B GLY 3.5 23.1 - - - +
1317B ASP* 3.5 19.9 - - + +
1320B SER* 4.3 5.0 - - - -
1401B PRO 3.7 16.2 - - - -
1402B ASP* 3.4 8.7 + - - +
1403B HIS 3.3 0.4 - - - -
1404B SER* 1.3 81.1 - - - +
1406B LEU* 1.3 57.4 + - - +
1408B HIS* 3.2 18.6 + + - +
1409B ALA* 2.8 27.9 + - - +
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Residues in contact with LEU1406 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1315B ILE* 4.9 0.9 - - + -
1316B GLY* 3.7 19.5 - - - +
1319B LEU* 4.6 9.0 - - + -
1389B ILE* 3.8 20.8 - - + +
1392B ILE* 3.6 33.7 - - + -
1393B LEU* 3.9 19.7 - - + +
1396B THR* 3.7 22.2 - - - +
1402B ASP* 2.9 40.8 + - - +
1403B HIS 3.7 3.1 - - - +
1405B HIS* 1.3 74.2 - - - +
1407B LYS* 1.3 59.6 + - - +
1409B ALA* 3.2 4.5 + - + +
1410B LEU* 2.9 30.7 + - - +
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Residues in contact with LYS1407 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1393B LEU* 4.2 16.3 - - + +
1403B HIS* 2.9 22.7 + - + +
1404B SER* 3.1 12.1 + - - +
1406B LEU* 1.3 75.7 - - - +
1408B HIS* 1.3 67.1 + - + +
1410B LEU* 3.5 3.6 + - - +
1411B GLU* 3.3 21.1 + - - +
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Residues in contact with HIS1408 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1320B SER* 3.6 7.5 + - - +
1404B SER* 3.0 34.8 + - - -
1405B HIS* 3.4 17.3 + + - +
1407B LYS* 1.3 79.1 - - + +
1409B ALA* 1.3 66.3 + - - +
1411B GLU* 3.1 7.7 + - - +
1412B LYS* 3.0 48.3 + - - +
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Residues in contact with ALA1409 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1316B GLY 4.2 5.6 - - - +
1319B LEU* 4.0 20.9 - - + -
1320B SER* 4.2 8.0 + - - +
1323B LEU* 3.5 8.7 - - + +
1389B ILE* 3.7 24.5 - - + -
1405B HIS 2.8 14.0 + - - +
1406B LEU* 3.5 10.5 - - - +
1408B HIS* 1.3 75.5 - - - +
1410B LEU* 1.3 56.0 + - - +
1412B LYS* 3.3 2.4 + - - +
1413B ALA* 2.8 31.5 + - - +
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Residues in contact with LEU1410 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1386B PRO* 4.1 24.0 - - + +
1389B ILE* 4.0 14.9 - - + +
1390B LYS* 4.4 17.3 - - + +
1393B LEU* 4.0 20.6 - - + -
1406B LEU 2.9 16.5 + - - +
1407B LYS* 3.7 6.7 - - - +
1409B ALA* 1.3 73.8 - - - +
1411B GLU* 1.3 65.4 + - - +
1413B ALA* 3.4 3.2 + - - +
1414B GLU* 3.0 52.9 + - + +
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Residues in contact with GLU1411 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1407B LYS 3.3 10.2 + - - +
1408B HIS* 3.1 11.3 + - - +
1410B LEU* 1.3 78.0 - - - +
1412B LYS* 1.3 60.1 + - + +
1414B GLU* 3.7 10.3 + - - +
1415B GLU* 2.9 40.3 + - - +
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Residues in contact with LYS1412 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1320B SER* 3.2 47.1 + - - +
1323B LEU* 4.3 15.1 - - + +
1324B PRO* 4.0 17.9 - - + -
1408B HIS* 3.0 35.0 + - - +
1409B ALA 3.8 3.4 - - - +
1411B GLU* 1.3 76.8 - - + +
1413B ALA* 1.3 59.5 + - - +
1415B GLU* 3.3 17.3 + - - +
1416B LEU* 2.8 29.7 + - - +
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Residues in contact with ALA1413 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1323B LEU* 3.7 18.1 - - + +
1382B VAL 4.7 0.5 - - - +
1385B TYR* 4.2 11.2 - - + -
1386B PRO* 4.0 27.4 - - + -
1389B ILE* 4.2 6.5 - - + -
1409B ALA 2.8 20.3 + - - +
1410B LEU 4.0 3.1 - - - +
1412B LYS* 1.3 72.7 - - - +
1414B GLU* 1.3 60.9 + - - +
1416B LEU* 3.6 6.7 + - - +
1417B CYS* 3.2 28.8 + - - -
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Residues in contact with GLU1414 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64A TYR* 3.6 18.5 + - - +
1386B PRO* 4.2 12.8 - - + +
1410B LEU* 3.0 48.5 + - + +
1411B GLU* 3.7 7.4 - - - +
1413B ALA* 1.3 74.8 - - - +
1415B GLU* 1.3 64.8 + - - +
1417B CYS* 3.4 1.1 + - - -
1418B SER* 3.0 23.0 + - - -
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Residues in contact with GLU1415 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1411B GLU* 2.9 26.9 + - - +
1412B LYS* 3.4 20.6 - - - +
1414B GLU* 1.3 77.6 - - - +
1416B LEU* 1.3 62.6 + - - +
1418B SER* 3.3 5.7 + - - -
1419B GLN* 3.0 42.4 + - + +
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Residues in contact with LEU1416 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1323B LEU* 5.3 15.0 - - + +
1326B MET* 5.7 8.1 - - + +
1329B TYR* 6.6 0.2 - - + -
1330B ILE* 4.8 1.3 - - - +
1382B VAL* 5.4 10.1 - - + -
1412B LYS 2.8 19.2 + - - +
1413B ALA* 3.7 9.0 - - - +
1414B GLU 3.3 0.2 - - - -
1415B GLU* 1.3 72.6 - - - +
1417B CYS* 1.3 58.6 + - - +
1419B GLN* 3.2 13.6 + - - +
1420B VAL* 2.9 35.6 + - + +
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Residues in contact with CYS1417 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64A TYR* 3.3 34.1 - - + +
67A LEU* 4.0 4.8 - - + +
1382B VAL* 3.1 37.9 - - - -
1383B THR* 3.8 13.0 - - - -
1386B PRO* 3.9 9.9 - - - -
1413B ALA 3.2 15.3 + - - -
1414B GLU 3.7 2.7 - - - +
1415B GLU 3.3 0.4 - - - -
1416B LEU* 1.3 78.1 - - - +
1418B SER* 1.3 57.8 + - - +
1420B VAL* 3.1 10.1 + - - +
1421B ASN* 2.8 30.3 + - - +
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Residues in contact with SER1418 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64A TYR* 3.7 15.4 - - - -
1414B GLU 3.0 16.1 + - - -
1415B GLU* 3.8 6.3 - - - -
1417B CYS* 1.3 78.1 - - - +
1419B GLN* 1.3 58.2 + - - +
1421B ASN* 3.6 5.0 + - - +
1422B GLU* 2.7 40.9 + - - +
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Residues in contact with GLN1419 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1327B GLN* 3.0 33.1 + - - +
1330B ILE* 3.6 18.2 - - + +
1415B GLU* 3.0 33.2 + - + +
1416B LEU* 3.6 9.9 - - - +
1418B SER* 1.3 76.5 - - - +
1420B VAL* 1.3 52.4 + - - +
1422B GLU* 3.1 7.3 + - - +
1423B GLY* 2.7 34.8 + - - -
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Residues in contact with VAL1420 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67A LEU* 3.7 17.7 - - + -
1329B TYR* 4.1 22.0 - - + +
1330B ILE* 4.0 22.5 - - + +
1333B CYS* 3.5 35.0 - - + -
1334B SER* 5.2 0.7 - - - -
1382B VAL* 4.6 13.5 - - + -
1416B LEU* 2.9 23.6 + - + +
1417B CYS* 3.3 9.9 - - - +
1419B GLN* 1.3 75.4 - - - +
1421B ASN* 1.3 64.4 + - - +
1423B GLY* 3.1 2.4 + - - -
1424B VAL* 3.0 26.9 + - - +
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Residues in contact with ASN1421 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63A ASP 5.0 1.0 + - - -
64A TYR* 3.5 26.0 - - + +
65A ASP* 2.9 26.6 + - - +
66A ARG* 2.8 37.2 + - - +
67A LEU* 3.2 19.3 + - + +
1417B CYS 2.8 18.2 + - - +
1418B SER* 3.6 6.5 + - - +
1420B VAL* 1.3 73.9 - - - +
1422B GLU* 1.3 69.4 + - - +
1424B VAL* 3.3 4.8 + - - +
1425B ARG* 3.2 21.5 + - - +
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Residues in contact with GLU1422 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1418B SER* 2.7 31.0 + - - +
1419B GLN* 3.5 7.4 - - - +
1421B ASN* 1.3 77.0 + - - +
1423B GLY* 1.3 59.4 + - - +
1425B ARG* 2.4 42.7 + - - +
1426B GLU* 2.9 45.3 + - - +
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Residues in contact with GLY1423 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1330B ILE* 4.2 16.8 - - - -
1334B SER* 3.2 16.4 - - - -
1419B GLN 2.7 20.4 + - - -
1420B VAL 3.6 2.0 - - - -
1422B GLU* 1.3 72.3 - - - +
1424B VAL* 1.3 60.6 + - - +
1426B GLU* 3.5 14.2 + - - +
1427B LYS* 3.1 18.5 + - - +
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Residues in contact with VAL1424 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66A ARG* 3.9 29.2 - - + +
67A LEU* 4.0 19.3 - - + -
70A LEU* 4.9 11.0 - - + -
1333B CYS* 3.3 33.4 - - + +
1334B SER* 3.8 8.8 - - - +
1337B LEU* 5.5 7.6 - - + -
1420B VAL 3.0 18.4 + - - +
1421B ASN 3.5 7.2 - - - +
1422B GLU 3.1 0.2 - - - -
1423B GLY* 1.3 75.5 - - - +
1425B ARG* 1.3 58.1 + - - +
1427B LYS* 3.9 1.4 - - - +
1428B GLU* 2.9 29.7 + - + +
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Residues in contact with ARG1425 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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65A ASP* 2.5 44.3 + - - -
66A ARG* 3.7 25.2 - - + +
1421B ASN* 3.2 4.9 + - - +
1422B GLU* 2.4 53.4 + - - +
1424B VAL* 1.3 78.0 - - - +
1426B GLU* 1.3 59.9 - - + +
1428B GLU* 3.2 8.3 + - + +
1429B ASN* 2.8 30.4 + - + +
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Residues in contact with GLU1426 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1422B GLU* 2.9 32.1 + - - +
1423B GLY* 3.9 11.7 - - - +
1425B ARG* 1.3 76.1 - - + +
1427B LYS* 1.3 57.8 + - - +
1429B ASN* 3.0 11.4 + - - +
1430B SER* 2.8 28.5 + - - -
1275D GLU* 5.8 3.6 - - - +
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Residues in contact with LYS1427 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1334B SER* 3.2 32.3 - - - +
1335B ARG* 3.4 45.3 - - + +
1338B ASN* 3.9 20.0 - - - +
1423B GLY 3.1 13.2 + - - +
1424B VAL 4.0 2.0 - - - +
1426B GLU* 1.3 75.8 - - - +
1428B GLU* 1.3 66.3 + - - +
1430B SER* 4.2 13.9 - - - -
1431B ASP* 3.0 33.2 + - + +
1434B GLU* 5.6 3.8 - - - -
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Residues in contact with GLU1428 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A ARG* 5.5 10.5 - - - +
1337B LEU* 6.2 4.3 - - + -
1424B VAL* 2.9 22.5 + - + +
1425B ARG* 3.2 10.3 + - + +
1427B LYS* 1.3 75.7 - - - +
1429B ASN* 1.3 61.9 + - - +
1431B ASP* 4.2 4.6 - - - +
1432B ARG* 3.3 21.8 + - - +
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Residues in contact with ASN1429 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1425B ARG* 2.8 15.6 + - + +
1426B GLU* 3.0 13.2 + - - +
1428B GLU* 1.3 76.3 - - - +
1430B SER* 1.3 67.1 + - - +
1432B ARG* 3.1 7.7 + - - +
1433B LEU* 3.0 30.6 + - - +
1452B ASN* 4.7 1.4 + - - -
1460B PRO* 6.0 1.2 - - - +
1461B ARG 3.3 20.1 + - - +
1462B LYS* 3.4 7.1 - - - +
1463B PHE* 3.0 35.5 + - - +
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Residues in contact with SER1430 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1426B GLU 2.8 18.2 + - - -
1427B LYS* 3.2 19.2 + - - +
1429B ASN* 1.3 75.9 - - - +
1431B ASP* 1.3 56.9 + - - +
1433B LEU* 3.3 3.3 + - - +
1434B GLU* 3.0 40.7 + - - +
1452B ASN* 3.1 31.4 + - - +
1276D LYS* 5.2 7.4 - - - +
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Residues in contact with ASP1431 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1338B ASN* 5.3 10.8 - - - +
1427B LYS* 3.0 25.7 + - + +
1428B GLU* 4.2 4.5 - - - +
1430B SER* 1.3 77.7 - - - +
1432B ARG* 1.3 61.8 + - - +
1434B GLU* 3.9 11.1 - - - +
1435B TRP* 3.1 24.3 + - - +
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Residues in contact with ARG1432 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1428B GLU 3.3 15.7 + - - +
1429B ASN* 3.1 12.4 + - - +
1431B ASP* 1.3 78.9 - - - +
1433B LEU* 1.3 57.6 + - - +
1435B TRP* 3.3 4.7 + - - +
1436B ILE* 3.1 33.0 + - - +
1463B PHE* 4.5 19.1 - - + -
1505B PHE* 3.6 28.9 - - + -
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Residues in contact with LEU1433 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1429B ASN* 3.0 26.5 + - - +
1430B SER 3.8 0.4 - - - +
1432B ARG* 1.3 75.0 - - - +
1434B GLU* 1.3 59.0 + - - +
1436B ILE* 3.6 3.9 + - + +
1437B GLN* 3.1 25.1 + - - +
1451B PHE* 3.6 30.5 - - + +
1452B ASN* 3.2 35.9 + - + +
1461B ARG* 3.4 32.8 - - + +
1463B PHE* 4.3 11.0 - - + +
1483B PHE* 3.8 34.5 - - + -
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Residues in contact with GLU1434 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1427B LYS* 5.6 3.6 - - - -
1430B SER* 3.0 28.4 + - - +
1431B ASP* 4.0 8.9 - - - +
1433B LEU* 1.3 76.0 - - - +
1435B TRP* 1.3 62.8 + - - +
1437B GLN* 3.6 17.1 + - + +
1438B ALA* 3.7 11.6 + - - +
1452B ASN* 3.7 26.4 + - + +
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Residues in contact with TRP1435 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1431B ASP 3.1 18.3 + - - +
1432B ARG 3.3 5.1 + - - +
1434B GLU* 1.3 77.8 - - - +
1436B ILE* 1.3 68.3 + - + +
1438B ALA* 3.5 4.6 + - - +
1439B HIS* 3.3 38.2 + - + +
1481B PHE* 4.2 25.6 - + - -
1505B PHE* 3.6 57.1 + + + -
1506B SER 2.9 24.5 + - - -
1507B PRO* 5.1 1.3 - - + +
1508B LYS 5.2 7.2 + - - -
1510B ASN* 5.7 5.4 - - + -
1512B GLN* 4.4 13.9 - - - -
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Residues in contact with ILE1436 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1432B ARG 3.1 21.4 + - - +
1433B LEU* 3.9 7.4 - - + +
1434B GLU 3.4 0.2 - - - -
1435B TRP* 1.3 88.2 - - + +
1437B GLN* 1.3 57.2 + - - +
1438B ALA 3.0 10.2 + - - -
1439B HIS 4.5 0.4 - - - +
1440B VAL* 3.2 38.5 + - + +
1451B PHE* 3.5 34.4 - - + -
1463B PHE* 4.3 16.4 - - + -
1481B PHE* 4.2 15.3 - - + -
1483B PHE* 3.3 32.8 - - + -
1505B PHE* 4.4 7.2 - - + -
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Residues in contact with GLN1437 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1433B LEU 3.1 17.3 + - - +
1434B GLU* 3.7 11.9 - - + +
1435B TRP 3.3 0.6 - - - -
1436B ILE* 1.3 77.2 - - - +
1438B ALA* 1.3 57.3 + - - +
1440B VAL 4.6 7.3 + - - +
1449B LEU 2.5 24.7 + - - -
1450B VAL* 3.2 7.3 - - - +
1451B PHE* 2.5 48.1 + - - +
1452B ASN* 4.0 3.7 + - + +
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Residues in contact with ALA1438 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1434B GLU 3.7 12.1 + - - +
1435B TRP* 3.5 5.3 + - - +
1436B ILE 3.0 0.4 - - - -
1437B GLN* 1.3 81.9 - - - +
1439B HIS* 1.3 58.9 + - + +
1440B VAL 3.5 2.4 + - - -
1438D ALA* 5.0 21.8 - - + +
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Residues in contact with HIS1439 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1435B TRP* 3.3 35.8 + - + +
1436B ILE 3.4 0.4 + - - +
1438B ALA* 1.3 77.8 - - + +
1440B VAL* 1.3 59.4 + - - +
1441B GLN 4.3 0.2 - - - -
1510B ASN 3.9 16.4 - - - +
1511B LEU* 5.1 2.2 - - - +
1512B GLN* 2.9 42.1 + - - +
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Residues in contact with VAL1440 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1436B ILE* 3.2 33.2 + - + +
1437B GLN* 4.6 7.6 + - - +
1438B ALA 3.5 2.4 + - - -
1439B HIS* 1.3 86.5 - - + +
1441B GLN* 1.3 69.3 + - - +
1442B CYS* 3.4 9.9 + - + +
1451B PHE* 4.7 16.2 - - + -
1481B PHE* 4.1 16.4 - - + -
1488B LEU* 5.7 8.5 - - + -
1490B THR* 5.3 5.2 - - - -
1512B GLN* 3.4 24.0 - - + +
1513B TYR 4.9 6.1 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il