Contacts of the helix formed by residues 343 - 400 (chain A) in PDB entry 3QMK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 343 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342A LEU* 1.3 92.1 - - + +
344A LYS* 1.3 68.1 + - - +
345A ALA* 4.4 4.9 - - + +
346A ASP* 3.0 42.8 + - - +
347A ARG* 3.1 11.0 + - - +
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Residues in contact with LYS 344 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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342A LEU 3.7 2.0 + - - -
343A PRO* 1.3 70.0 - - - +
345A ALA* 1.3 63.9 + - - +
347A ARG* 3.0 31.2 + - - +
348A GLN* 3.1 21.3 + - + +
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Residues in contact with ALA 345 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343A PRO* 3.2 5.2 - - + +
344A LYS* 1.3 79.8 - - - +
346A ASP* 1.3 68.8 + - - +
348A GLN* 3.3 15.5 + - - +
349A ALA* 3.0 21.7 + - - +
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Residues in contact with ASP 346 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339A SER* 5.2 0.8 + - - -
342A LEU* 4.7 5.8 - - + -
343A PRO* 3.0 39.2 + - + +
345A ALA* 1.3 82.8 - - - +
347A ARG* 1.3 62.1 + - - +
349A ALA* 3.5 9.7 - - - +
350A LEU* 3.1 19.8 + - - +
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Residues in contact with ARG 347 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339A SER* 3.3 33.9 + - - +
340A LYS* 2.6 35.8 + - - +
342A LEU* 3.4 22.2 + - + +
343A PRO 3.1 10.4 + - - +
344A LYS* 3.0 25.8 + - - +
346A ASP* 1.3 74.3 - - - +
348A GLN* 1.3 68.4 + - + +
350A LEU* 2.8 17.1 + - - +
351A ASN* 3.0 12.3 + - - +
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Residues in contact with GLN 348 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344A LYS* 3.1 14.9 + - + +
345A ALA* 3.7 17.3 - - - +
347A ARG* 1.3 79.6 - - + +
349A ALA* 1.3 62.7 + - - +
351A ASN* 3.2 10.1 + - - +
352A GLU* 3.0 23.9 + - - +
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Residues in contact with ALA 349 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345A ALA 3.0 14.3 + - - +
346A ASP* 3.5 15.3 - - - +
347A ARG 3.0 0.2 - - - -
348A GLN* 1.3 78.2 - - - +
350A LEU* 1.3 60.9 + - - +
352A GLU* 3.6 6.0 + - - +
353A HIS* 3.1 21.8 + - - +
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Residues in contact with LEU 350 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332A TRP* 6.1 0.7 - - + +
335A ALA* 5.2 8.3 - - + -
336A ASP* 5.6 4.9 - - - +
339A SER* 5.1 8.7 - - - +
346A ASP 3.1 12.4 + - - +
347A ARG* 2.8 13.2 + - - +
349A ALA* 1.3 76.2 - - - +
351A ASN* 1.3 64.7 + - - +
353A HIS* 3.0 22.1 + - - +
354A PHE* 3.1 24.5 + - + -
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Residues in contact with ASN 351 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332A TRP* 3.7 25.1 - - - +
336A ASP* 5.9 0.6 + - - -
347A ARG 3.0 10.1 + - - +
348A GLN* 3.2 13.7 + - - +
350A LEU* 1.3 76.7 - - - +
352A GLU* 1.3 63.5 + - - +
353A HIS 3.0 0.7 + - - -
354A PHE* 3.1 4.2 + - - +
355A GLN* 2.8 63.1 + - - +
447B PHE* 4.4 10.5 - - - -
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Residues in contact with GLU 352 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348A GLN 3.0 14.0 + - - +
349A ALA* 3.9 5.8 - - - +
351A ASN* 1.3 84.0 + - - +
353A HIS* 1.3 59.9 + - - +
355A GLN* 4.1 5.3 - - - +
356A SER* 2.8 33.4 + - - +
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Residues in contact with HIS 353 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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331A GLU* 5.4 3.6 - - - -
349A ALA 3.1 12.5 + - - +
350A LEU* 3.0 14.4 + - - +
352A GLU* 1.3 78.9 - - - +
354A PHE* 1.3 85.5 + + - +
356A SER* 3.5 5.8 - - - -
357A ILE* 3.1 58.2 + - + +
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Residues in contact with PHE 354 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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328A VAL* 4.0 14.4 - - + -
331A GLU* 3.7 37.0 - - + -
332A TRP* 3.4 58.8 - + + -
335A ALA* 3.4 25.1 - - + -
350A LEU* 3.1 25.3 + - + -
351A ASN 3.1 4.0 + - - +
353A HIS* 1.3 98.4 - + - +
355A GLN* 1.3 67.1 + - - +
357A ILE* 3.2 10.6 + - + +
358A LEU* 3.0 29.2 + - - +
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Residues in contact with GLN 355 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332A TRP* 3.8 22.6 - - + -
351A ASN* 2.8 49.8 + - - +
352A GLU* 4.1 5.6 - - - +
354A PHE* 1.3 76.7 - - - +
356A SER* 1.3 57.0 + - - +
358A LEU* 3.4 1.4 + - - -
359A GLN* 2.9 23.2 + - - +
443B GLN 5.2 0.9 - - - +
446B ARG* 3.1 49.6 + - - +
447B PHE* 4.1 15.6 + - - +
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Residues in contact with SER 356 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352A GLU* 2.8 25.9 + - - +
353A HIS* 3.5 6.1 - - - -
355A GLN* 1.3 73.8 - - - +
357A ILE* 1.3 64.1 + - - +
358A LEU 3.1 1.6 - - - -
359A GLN* 3.3 8.1 + - - +
360A THR* 3.2 27.9 + - - -
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Residues in contact with ILE 357 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328A VAL* 3.7 32.3 - - + -
331A GLU* 5.6 5.2 - - - +
353A HIS* 3.1 49.7 + - + +
354A PHE* 3.6 19.1 - - + +
356A SER* 1.3 76.9 - - - +
358A LEU* 1.3 58.0 + - - +
360A THR* 3.8 6.2 + - - -
361A LEU* 3.2 24.1 + - + +
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Residues in contact with LEU 358 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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325A ILE* 5.0 4.5 - - + +
328A VAL* 3.5 29.8 - - + -
329A MET* 3.7 31.2 - - + -
332A TRP* 3.8 21.5 - - + -
354A PHE 3.0 18.4 + - - +
355A GLN 3.7 0.2 - - - +
357A ILE* 1.3 76.6 - - - +
359A GLN* 1.3 55.9 + - - +
361A LEU* 3.2 18.1 + - + +
362A GLU* 2.7 41.7 + - - +
431B TYR* 3.9 15.5 - - + +
446B ARG* 3.7 29.4 - - + +
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Residues in contact with GLN 359 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355A GLN 2.9 14.8 + - - +
356A SER* 3.5 13.4 - - - +
358A LEU* 1.3 78.3 - - - +
360A THR* 1.3 58.4 + - - +
362A GLU* 3.2 8.2 + - - +
363A GLU* 3.0 53.0 + - - +
439B PRO 5.9 0.2 + - - -
443B GLN* 2.6 31.2 + - - +
446B ARG* 3.6 21.4 + - - +
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Residues in contact with THR 360 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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356A SER 3.2 14.3 + - - -
357A ILE* 3.8 6.4 - - - -
358A LEU 3.3 0.2 - - - -
359A GLN* 1.3 76.4 - - - +
361A LEU* 1.3 59.3 + - - +
363A GLU* 3.1 17.4 + - - +
364A GLN* 2.9 48.1 + - + +
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Residues in contact with LEU 361 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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321A ARG* 3.7 19.1 - - - +
324A GLN* 3.2 31.2 - - + +
325A ILE* 3.5 46.0 - - + +
328A VAL* 4.5 9.9 - - + -
357A ILE* 3.2 14.3 + - + +
358A LEU* 3.2 18.5 + - + +
360A THR* 1.3 77.3 - - - +
362A GLU* 1.3 58.6 + - + +
364A GLN* 3.0 14.6 + - - +
365A VAL* 2.9 36.7 + - + +
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Residues in contact with GLU 362 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325A ILE* 6.5 0.4 - - + -
358A LEU 2.7 26.8 + - - +
359A GLN* 3.4 8.0 + - - +
361A LEU* 1.3 72.2 - - + +
363A GLU* 1.3 58.7 + - + +
365A VAL* 3.4 3.9 + - - +
366A SER* 2.9 29.6 + - - -
431B TYR* 2.5 36.6 + - + +
435B ALA* 3.9 24.3 - - + +
439B PRO* 4.2 10.2 - - + +
442B ALA* 3.8 13.7 - - + +
443B GLN* 3.7 10.6 + - - +
446B ARG* 2.7 42.0 + - - +
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Residues in contact with GLU 363 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359A GLN* 3.0 42.6 + - + +
360A THR* 3.1 19.2 + - - +
362A GLU* 1.3 75.8 - - + +
364A GLN* 1.3 61.0 + - - +
366A SER* 3.9 6.0 - - - -
367A GLY* 3.0 24.3 + - - -
439B PRO* 5.9 4.5 - - + -
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Residues in contact with GLN 364 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ARG* 2.9 40.5 + - - +
324A GLN* 4.5 0.5 - - - +
360A THR* 2.9 38.4 + - + +
361A LEU* 3.3 17.0 - - - +
363A GLU* 1.3 78.9 - - + +
365A VAL* 1.3 58.0 + - - +
367A GLY* 3.9 0.4 - - - -
368A GLU* 2.9 33.4 + - - +
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Residues in contact with VAL 365 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ARG* 3.7 37.0 - - + -
325A ILE* 5.1 7.2 - - + -
361A LEU* 2.9 26.5 + - + +
362A GLU* 3.7 6.3 - - - +
364A GLN* 1.3 77.5 - - - +
366A SER* 1.3 61.1 + - - +
368A GLU* 3.8 8.7 - - - +
369A ARG* 3.1 24.1 + - + +
432B GLN* 3.8 16.2 - - + +
435B ALA* 4.0 5.8 - - + -
436B ALA* 3.6 32.5 - - + +
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Residues in contact with SER 366 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A GLU 2.9 12.8 + - - -
363A GLU* 3.9 6.1 - - - -
365A VAL* 1.3 78.7 - - - +
367A GLY* 1.3 62.2 + - - +
369A ARG* 3.5 2.3 + - - +
370A GLN* 3.2 38.6 + - - +
435B ALA 3.3 19.7 - - - -
436B ALA 4.0 8.5 + - - +
439B PRO* 2.9 29.2 - - - +
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Residues in contact with GLY 367 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363A GLU 3.0 17.4 + - - -
364A GLN* 3.9 0.4 - - - -
366A SER* 1.3 76.1 - - - +
368A GLU* 1.3 62.1 + - - +
370A GLN* 3.3 14.9 + - - +
371A ARG* 3.1 22.5 + - - +
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Residues in contact with GLU 368 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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317A LEU* 3.2 46.0 - - + +
320A ARG* 4.2 5.2 + - - -
321A ARG* 2.9 50.0 + - - +
364A GLN 2.9 16.7 + - - +
365A VAL* 3.8 6.0 - - - +
367A GLY* 1.3 76.8 - - - +
369A ARG* 1.3 62.8 + - - +
371A ARG* 3.3 9.3 + - - +
372A LEU* 3.1 21.7 + - - +
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Residues in contact with ARG 369 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314A LYS* 3.7 35.4 + - - +
317A LEU* 5.9 0.7 - - - -
318A GLU* 5.6 2.8 + - - +
365A VAL 3.1 16.7 + - - +
366A SER 3.8 0.4 - - - +
367A GLY 3.4 0.2 - - - -
368A GLU* 1.3 78.8 - - - +
370A GLN* 1.3 59.2 + - + +
372A LEU* 3.2 12.1 + - - +
373A VAL* 2.9 45.4 + - + +
432B GLN* 3.9 20.0 + - - -
433B HIS* 4.9 5.1 - - - -
436B ALA* 3.4 34.7 - - + +
437B VAL* 3.9 17.1 - - + +
4C IDS 3.1 35.0 + - - +
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Residues in contact with GLN 370 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366A SER* 3.2 25.8 + - - +
367A GLY* 3.6 15.2 - - - +
368A GLU 3.3 0.2 - - - -
369A ARG* 1.3 76.9 - - + +
371A ARG* 1.3 65.7 + - - +
373A VAL* 3.5 6.5 + - - +
374A GLU* 3.0 27.1 + - - +
436B ALA 5.4 2.5 - - - +
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Residues in contact with ARG 371 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367A GLY 3.1 12.6 + - - +
368A GLU* 3.5 11.9 - - - +
370A GLN* 1.3 74.8 - - - +
372A LEU* 1.3 64.3 + - - +
374A GLU* 3.1 20.3 - - - +
375A THR* 3.0 33.2 + - - +
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Residues in contact with LEU 372 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A PHE* 3.9 20.6 - - + -
313A ALA* 4.1 20.4 - - + -
314A LYS* 3.7 42.0 - - + +
317A LEU* 4.1 19.3 - - + -
368A GLU 3.1 12.4 + - - +
369A ARG* 3.2 17.0 + - - +
371A ARG* 1.3 78.1 - - - +
373A VAL* 1.3 60.9 + - - +
374A GLU 3.2 0.2 + - - -
375A THR* 3.4 6.9 + - + -
376A HIS* 3.0 24.1 + - - +
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Residues in contact with VAL 373 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A PHE* 4.5 8.7 - - + -
369A ARG* 2.9 42.4 + - + +
370A GLN* 4.0 6.3 - - - +
372A LEU* 1.3 71.8 - - - +
374A GLU* 1.3 58.1 + - - +
376A HIS* 3.9 7.2 - - + +
377A ALA* 3.0 31.8 + - + +
4C IDS 3.4 40.4 - - - +
----------------------------------------------------------
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Residues in contact with GLU 374 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A GLN 3.0 18.6 + - - +
371A ARG* 3.1 22.2 - - - +
373A VAL* 1.3 75.5 - - - +
375A THR* 1.3 70.3 + - - +
377A ALA* 3.4 4.3 + - - +
378A THR* 3.1 31.8 + - - +
----------------------------------------------------------
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Residues in contact with THR 375 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306A GLU* 5.3 0.4 - - - +
371A ARG* 3.0 19.9 + - - +
372A LEU* 3.8 7.2 - - + -
374A GLU* 1.3 84.8 + - - +
376A HIS* 1.3 63.3 + - - +
378A THR* 3.6 4.6 + - - -
379A ARG* 3.1 62.1 + - + +
----------------------------------------------------------
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Residues in contact with HIS 376 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306A GLU* 2.7 35.9 + - + +
307A HIS* 4.2 17.8 + - + -
310A PHE* 3.5 52.7 - + + -
372A LEU 3.0 18.0 + - - +
373A VAL* 3.9 4.3 - - + +
375A THR* 1.3 79.1 - - - +
377A ALA* 1.3 59.5 + - + +
379A ARG* 3.2 2.1 + - - +
380A VAL* 2.9 49.6 + - + +
1C SGN 5.3 0.4 - - - -
2C IDS 3.6 25.1 + - - -
3C SGN 6.0 4.2 - - - -
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Residues in contact with ALA 377 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373A VAL* 3.0 22.1 + - + +
374A GLU* 3.4 5.1 + - - +
376A HIS* 1.3 79.1 - - + +
378A THR* 1.3 61.9 - - - +
380A VAL* 3.4 6.7 + - - +
381A ILE* 3.1 35.8 + - + +
426A HIS* 5.7 1.5 - - - -
2C IDS 5.9 0.7 - - - -
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Residues in contact with THR 378 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374A GLU* 3.1 20.0 + - - +
375A THR* 3.9 5.8 - - - +
377A ALA* 1.3 79.7 - - - +
379A ARG* 1.3 63.9 + - + +
381A ILE* 3.7 8.5 + - - +
382A ALA* 3.2 22.7 + - + +
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Residues in contact with ARG 379 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300A MET* 4.5 13.5 - - - +
306A GLU* 2.9 42.4 + - + -
375A THR* 3.1 43.9 + - + +
376A HIS 3.7 3.6 - - - +
378A THR* 1.3 78.6 - - + +
380A VAL* 1.3 60.5 + - - +
382A ALA* 3.3 6.5 + - - +
383A LEU* 2.9 30.3 + - - +
----------------------------------------------------------
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Residues in contact with VAL 380 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306A GLU* 4.7 6.5 - - + -
376A HIS* 2.9 50.4 + - + +
377A ALA* 3.4 6.0 + - - +
379A ARG* 1.3 75.7 - - - +
381A ILE* 1.3 64.5 + - - +
383A LEU* 3.3 8.1 + - + +
384A ILE* 3.0 34.6 + - + +
426A HIS* 3.7 28.5 - - + +
1C SGN 3.8 23.1 - - - +
2C IDS 3.8 11.2 - - - +
----------------------------------------------------------
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Residues in contact with ILE 381 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A ALA* 3.1 22.4 + - + +
378A THR* 3.9 8.5 - - - +
380A VAL* 1.3 76.1 - - - +
382A ALA* 1.3 62.7 + - - +
384A ILE* 3.3 8.8 + - - +
385A ASN* 3.1 44.7 + - - +
426A HIS* 4.4 20.0 - - + +
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Residues in contact with ALA 382 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378A THR* 3.2 17.4 + - + +
379A ARG* 3.6 7.9 - - - +
381A ILE* 1.3 79.6 - - - +
383A LEU* 1.3 60.6 + - - +
385A ASN* 3.3 8.1 + - - +
386A ASP* 2.9 41.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 383 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306A GLU* 5.2 13.0 - - + +
379A ARG 2.9 17.2 + - - +
380A VAL* 3.7 7.4 - - + +
382A ALA* 1.3 76.7 - - - +
384A ILE* 1.3 60.6 + - + +
386A ASP* 4.0 10.1 + - + +
387A GLN* 2.8 64.0 + - + +
1C SGN 4.2 26.0 - - - +
----------------------------------------------------------
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Residues in contact with ILE 384 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A VAL* 3.0 34.5 + - + +
381A ILE* 3.7 7.6 - - + +
383A LEU* 1.3 78.7 - - + +
385A ASN* 1.3 62.9 + - - +
387A GLN* 3.4 6.7 + - - +
388A ARG* 3.0 22.6 + - + +
419A ALA 4.7 6.0 - - - +
422A LYS* 4.5 27.4 - - + +
423A GLU* 3.6 44.0 - - + +
426A HIS* 3.8 38.6 - - + +
1C SGN 5.3 1.6 - - - +
----------------------------------------------------------
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Residues in contact with ASN 385 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381A ILE* 3.1 35.5 + - - +
382A ALA* 3.9 6.6 - - - +
384A ILE* 1.3 77.1 - - - +
386A ASP* 1.3 58.3 + - - +
388A ARG* 2.8 40.8 + - - +
389A ARG* 2.9 53.3 + - - +
423A GLU* 4.0 8.8 - - - +
----------------------------------------------------------
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Residues in contact with ASP 386 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382A ALA* 2.9 34.9 + - - +
383A LEU* 3.7 12.5 - - + +
385A ASN* 1.3 78.2 - - - +
387A GLN* 1.3 58.9 + - + +
389A ARG* 3.8 17.9 + - - +
390A ALA* 3.0 29.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 387 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A LEU* 2.8 54.3 + - + +
384A ILE* 4.0 4.4 - - - +
386A ASP* 1.3 71.1 - - + +
388A ARG* 1.3 59.8 + - - +
390A ALA* 3.9 5.2 - - - +
391A ALA* 2.9 29.1 + - - +
419A ALA* 4.1 7.7 - - + +
422A LYS* 3.8 29.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 388 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A ILE* 3.0 18.4 + - + +
385A ASN* 2.8 35.1 + - - +
387A GLN* 1.3 76.0 - - - +
389A ARG* 1.3 91.7 + - - +
391A ALA* 3.1 2.8 + - - +
392A LEU* 2.8 31.5 + - + +
416A TYR* 4.3 10.1 - - + -
419A ALA* 3.7 19.2 - - + +
420A GLU* 3.3 42.8 - - + +
423A GLU* 2.7 31.6 + - - +
459A ARG* 3.5 26.8 - - - +
----------------------------------------------------------
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Residues in contact with ARG 389 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385A ASN* 2.9 36.3 + - - +
386A ASP* 3.8 16.5 + - - +
388A ARG* 1.3 104.6 - - - +
390A ALA* 1.3 60.2 + - - +
392A LEU* 3.5 14.2 + - + +
393A GLU* 3.2 21.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 390 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A ASP 3.0 18.7 + - - +
387A GLN* 3.9 5.6 - - - +
389A ARG* 1.3 74.8 - - - +
391A ALA* 1.3 66.2 + - - +
393A GLU* 3.5 10.1 + - - +
394A GLY* 3.0 19.1 + - - -
----------------------------------------------------------
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Residues in contact with ALA 391 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387A GLN 2.9 19.4 + - - +
388A ARG 3.5 4.5 - - - +
390A ALA* 1.3 77.0 - - - +
392A LEU* 1.3 63.3 + - - +
394A GLY* 3.0 3.5 + - - +
395A PHE* 2.9 24.1 + - - +
412A ALA 4.7 1.7 - - - +
415A ARG* 4.0 9.9 - - + +
416A TYR* 3.6 32.4 - - + +
419A ALA* 4.0 9.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 392 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388A ARG* 2.8 17.9 + - + +
389A ARG* 3.6 13.7 - - + +
391A ALA* 1.3 77.7 - - - +
393A GLU* 1.3 58.2 + - - +
395A PHE* 3.3 7.7 + - + +
396A LEU* 2.9 34.4 + - + +
416A TYR* 3.9 20.4 - - + -
459A ARG* 6.5 1.6 - - - -
463A SER* 3.9 25.4 - - - +
466A LEU* 4.6 15.0 - - + -
----------------------------------------------------------
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Residues in contact with GLU 393 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389A ARG 3.2 14.2 + - - +
390A ALA* 3.8 9.5 - - - +
391A ALA 3.3 0.2 - - - -
392A LEU* 1.3 79.0 - - - +
394A GLY* 1.3 59.5 + - - +
396A LEU* 3.3 9.9 + - + +
397A ALA* 2.8 32.3 + - + +
----------------------------------------------------------
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Residues in contact with GLY 394 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A ALA 3.0 11.7 + - - -
391A ALA* 3.0 7.1 + - - -
393A GLU* 1.3 76.7 - - - +
395A PHE* 1.3 63.7 + - - +
397A ALA* 3.2 7.1 + - - +
398A ALA* 3.0 22.9 + - - +
408A ARG* 5.2 1.4 + - - -
412A ALA* 4.0 7.2 - - - +
----------------------------------------------------------
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Residues in contact with PHE 395 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391A ALA 2.9 11.9 + - - +
392A LEU* 3.5 15.9 - - + +
394A GLY* 1.3 73.2 - - - +
396A LEU* 1.3 64.4 + - - +
398A ALA* 3.1 5.7 + - - +
399A LEU* 3.1 57.5 + - + +
409A VAL* 4.0 9.2 - - + -
412A ALA* 3.6 19.0 - - + +
413A LEU* 3.5 53.4 - - + -
416A TYR* 4.4 10.3 - + + -
463A SER* 3.5 28.9 - - - -
464A LEU* 5.1 0.4 - - - -
466A LEU* 4.2 11.9 - - + -
467A LEU* 4.2 14.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 396 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A LEU* 2.9 22.1 + - + +
393A GLU* 3.6 9.6 - - + +
395A PHE* 1.3 79.5 - - - +
397A ALA* 1.3 61.0 + - - +
399A LEU* 3.3 8.7 + - + +
400A GLN* 3.1 55.0 + - + +
466A LEU* 3.4 39.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 397 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393A GLU* 2.8 23.3 + - + +
394A GLY* 3.6 7.0 - - - +
396A LEU* 1.3 73.7 - - - +
398A ALA* 1.3 62.8 + - - +
400A GLN* 3.2 19.4 + - - +
401A ALA* 3.3 14.4 + - - +
408A ARG* 4.1 15.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 398 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394A GLY 3.0 12.5 + - - +
395A PHE 3.1 8.0 + - - +
397A ALA* 1.3 75.7 - - - +
399A LEU* 1.3 60.3 + - - +
400A GLN 3.3 0.5 + - - -
401A ALA* 3.5 14.2 + - - +
404A PRO* 4.2 6.6 - - - +
405A GLN 4.6 1.0 + - - -
408A ARG* 3.8 32.7 - - + +
409A VAL* 3.2 40.1 - - + +
412A ALA* 4.1 5.8 - - + -
----------------------------------------------------------
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Residues in contact with LEU 399 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395A PHE* 3.1 48.7 + - + +
396A LEU* 3.7 13.7 - - + +
397A ALA 3.3 0.2 - - - -
398A ALA* 1.3 76.6 - - - +
400A GLN* 1.3 61.5 + - + +
401A ALA 3.5 0.8 + - - -
404A PRO* 4.0 16.4 - - + +
409A VAL* 3.3 31.2 - - + -
466A LEU* 4.0 30.5 - - + +
467A LEU* 3.5 20.2 - - + +
470A ASN* 5.0 8.7 + - + +
473A LEU* 5.9 4.0 - - + -
477A LEU* 5.7 0.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN 400 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A LEU* 3.1 46.9 + - + +
397A ALA* 3.2 9.9 + - - +
398A ALA 3.1 0.4 - - - -
399A LEU* 1.3 84.8 - - + +
401A ALA* 1.3 59.7 + - - +
402A ASP* 3.4 3.3 + - - -
404A PRO* 5.2 0.4 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il