Contacts of the helix formed by residues 343 - 400 (chain B) in PDB entry 3QMK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 343 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342B LEU* 1.3 94.5 - - + +
344B LYS* 1.3 57.6 + - - +
345B ALA* 3.1 4.7 - - + +
346B ASP* 2.7 59.8 + - + +
347B ARG* 3.0 9.1 + - - -
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Residues in contact with LYS 344 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342B LEU 3.5 2.6 + - - -
343B PRO* 1.3 69.1 - - - +
345B ALA* 1.3 63.8 + - - +
347B ARG* 3.1 34.5 + - - +
348B GLN* 2.9 38.2 + - + +
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Residues in contact with ALA 345 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343B PRO* 3.0 5.0 + - + +
344B LYS* 1.3 77.6 - - - +
346B ASP* 1.3 69.5 + - - +
348B GLN* 3.3 15.9 + - - +
349B ALA* 3.1 22.1 + - - +
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Residues in contact with ASP 346 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342B LEU* 4.3 14.6 - - + +
343B PRO* 2.7 46.7 + - + +
345B ALA* 1.3 74.2 - - - +
347B ARG* 1.3 63.6 + - - +
349B ALA* 3.2 8.8 + - - +
350B LEU* 3.0 27.7 + - - +
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Residues in contact with ARG 347 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339B SER* 3.6 32.3 - - - +
340B LYS* 4.5 11.4 + - - +
342B LEU* 3.7 20.2 + - + +
343B PRO 3.0 5.6 + - - +
344B LYS* 3.1 39.3 + - - +
346B ASP* 1.3 76.7 - - - +
348B GLN* 1.3 63.3 + - + +
350B LEU* 3.4 11.3 + - - +
351B ASN* 3.1 22.5 + - - +
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Residues in contact with GLN 348 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344B LYS* 2.9 31.2 + - - +
345B ALA* 3.5 15.1 - - - +
347B ARG* 1.3 75.2 - - + +
349B ALA* 1.3 64.3 + - - +
351B ASN* 3.3 9.7 + - - +
352B GLU* 2.9 24.1 + - - +
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Residues in contact with ALA 349 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345B ALA 3.1 12.3 + - - +
346B ASP* 3.5 11.4 - - - +
348B GLN* 1.3 77.2 - - - +
350B LEU* 1.3 51.7 + - - +
352B GLU* 3.0 8.9 + - - +
353B HIS* 2.6 37.6 + - - +
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Residues in contact with LEU 350 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332B TRP* 5.6 0.2 - - - -
335B ALA* 4.2 13.5 - - + +
339B SER* 3.4 35.7 - - - +
342B LEU* 3.8 15.7 - - + -
346B ASP* 3.0 14.3 + - + +
347B ARG* 3.5 10.8 - - - +
349B ALA* 1.3 76.0 - - - +
351B ASN* 1.3 60.7 + - - +
353B HIS* 3.3 9.9 + - + +
354B PHE* 3.1 51.7 + - + -
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Residues in contact with ASN 351 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447A PHE* 4.9 6.1 - - - -
332B TRP* 3.7 29.9 + - - +
347B ARG 3.1 11.0 + - - +
348B GLN* 3.5 11.9 + - - +
349B ALA 3.2 0.2 - - - -
350B LEU* 1.3 78.9 - - - +
352B GLU* 1.3 65.9 + - - +
354B PHE* 3.0 4.9 + - - +
355B GLN* 2.9 46.3 + - - +
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Residues in contact with GLU 352 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348B GLN 2.9 14.3 + - - +
349B ALA* 3.4 11.2 - - - +
351B ASN* 1.3 78.5 + - - +
353B HIS* 1.3 57.7 + - - +
355B GLN* 4.3 11.5 - - - +
356B SER* 2.8 46.1 + - - -
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Residues in contact with HIS 353 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
331B GLU* 5.6 2.7 - - - -
349B ALA 2.6 18.0 + - - +
350B LEU* 3.3 16.6 - - + +
351B ASN 3.1 0.2 - - - -
352B GLU* 1.3 74.3 - - - +
354B PHE* 1.3 89.3 + + - +
356B SER* 3.5 5.3 - - - -
357B ILE* 3.2 52.7 + - + +
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Residues in contact with PHE 354 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328B VAL* 4.3 16.3 - - + +
331B GLU* 3.7 31.6 - - + -
332B TRP* 3.6 62.6 - + + -
335B ALA* 3.6 24.2 - - + -
350B LEU* 3.1 31.3 + - + -
351B ASN 3.0 6.0 + - - +
353B HIS* 1.3 96.8 - + - +
355B GLN* 1.3 65.9 + - - +
356B SER 3.1 1.8 - - - -
357B ILE* 3.1 8.6 + - + +
358B LEU* 3.0 29.3 + - - +
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Residues in contact with GLN 355 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443A GLN 5.0 1.4 - - - +
446A ARG* 3.0 52.3 + - - +
447A PHE* 4.7 11.1 - - - +
332B TRP* 4.3 17.6 - - + -
351B ASN* 2.9 46.7 + - - +
352B GLU* 3.9 11.7 - - - +
354B PHE* 1.3 74.3 - - - +
356B SER* 1.3 57.7 + - - +
358B LEU* 3.3 5.9 + - - -
359B GLN* 3.0 25.2 + - - +
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Residues in contact with SER 356 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352B GLU* 2.8 33.3 + - - -
353B HIS* 3.5 7.2 - - - -
355B GLN* 1.3 79.1 - - - +
357B ILE* 1.3 63.1 + - - +
359B GLN* 3.6 9.9 + - - +
360B THR* 3.2 25.6 + - - -
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Residues in contact with ILE 357 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328B VAL* 4.0 30.3 - - + -
331B GLU* 6.1 0.4 - - - +
353B HIS* 3.2 45.5 + - + +
354B PHE* 3.1 15.3 + - + +
356B SER* 1.3 78.8 - - - +
358B LEU* 1.3 59.6 + - - +
360B THR* 3.5 6.9 + - - -
361B LEU* 3.0 26.5 + - + +
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Residues in contact with LEU 358 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431A TYR* 3.7 19.0 + - + +
446A ARG* 3.8 23.6 - - + -
325B ILE* 4.9 2.9 - - + -
328B VAL* 3.8 26.2 - - + -
329B MET* 3.6 23.1 - - + -
332B TRP* 3.5 36.6 - - + -
354B PHE 3.0 17.9 + - - +
355B GLN* 3.3 4.5 + - - +
357B ILE* 1.3 73.4 - - - +
359B GLN* 1.3 56.4 + - - +
361B LEU* 3.2 14.3 + - + +
362B GLU* 2.7 40.7 + - - +
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Residues in contact with GLN 359 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443A GLN* 4.3 12.1 + - - +
446A ARG* 3.3 28.4 - - - +
355B GLN 3.0 14.8 + - - +
356B SER* 3.7 10.5 + - - +
357B ILE 3.3 0.2 - - - -
358B LEU* 1.3 73.8 - - - +
360B THR* 1.3 67.0 + - - +
362B GLU* 3.0 7.0 + - + +
363B GLU* 3.0 47.8 + - + +
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Residues in contact with THR 360 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356B SER 3.2 13.7 + - - -
357B ILE* 3.8 9.1 - - - -
359B GLN* 1.3 78.4 + - - +
361B LEU* 1.3 62.5 + - - +
363B GLU* 3.4 15.7 + - - +
364B GLN* 3.1 46.3 + - + +
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Residues in contact with LEU 361 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321B ARG* 3.8 19.5 - - - +
324B GLN* 4.0 17.9 - - + +
325B ILE* 3.9 43.3 - - + +
328B VAL* 4.2 17.7 - - + -
357B ILE* 3.0 14.9 + - + +
358B LEU* 3.4 15.5 - - + +
360B THR* 1.3 78.1 - - - +
362B GLU* 1.3 62.2 + - + +
364B GLN* 3.3 9.8 + - - +
365B VAL* 3.0 36.3 + - + +
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Residues in contact with GLU 362 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431A TYR* 2.8 27.8 + - + +
435A ALA* 4.2 17.8 - - + +
439A PRO* 4.3 10.5 - - + +
442A ALA* 3.8 24.0 - - + +
443A GLN* 3.7 10.5 + - - +
446A ARG* 2.7 48.8 + - - +
358B LEU 2.7 17.6 + - - +
359B GLN* 3.0 5.2 + - + +
361B LEU* 1.3 75.1 - - + +
363B GLU* 1.3 58.8 + - + +
365B VAL* 3.3 4.5 + - - +
366B SER* 3.0 29.9 + - - -
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Residues in contact with GLU 363 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
439A PRO* 6.3 2.5 - - + -
359B GLN* 3.0 38.7 + - + +
360B THR* 3.7 17.2 + - - +
362B GLU* 1.3 77.7 - - + +
364B GLN* 1.3 57.9 + - + +
366B SER* 3.6 5.6 + - - -
367B GLY* 2.9 25.6 + - - -
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Residues in contact with GLN 364 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321B ARG* 3.1 34.7 + - - +
324B GLN* 4.6 2.4 - - - +
360B THR* 3.1 32.9 + - + +
361B LEU* 3.7 7.0 - - - +
362B GLU 3.2 0.2 - - - -
363B GLU* 1.3 75.5 - - + +
365B VAL* 1.3 64.5 + - - +
367B GLY* 4.0 0.6 - - - -
368B GLU* 3.0 27.4 + - - +
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Residues in contact with VAL 365 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
432A GLN* 3.6 33.7 - - + +
435A ALA* 4.1 6.3 - - + -
436A ALA* 3.7 17.9 - - + +
321B ARG* 3.7 24.0 - - + +
325B ILE* 5.3 4.0 - - + -
361B LEU* 3.0 38.2 + - + +
362B GLU* 3.6 7.9 - - - +
364B GLN* 1.3 76.8 - - - +
366B SER* 1.3 64.1 - - - +
368B GLU* 3.3 10.4 + - - +
369B ARG* 3.0 22.0 + - - +
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Residues in contact with SER 366 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
435A ALA 3.5 18.5 + - - -
436A ALA* 4.2 9.8 + - - +
437A VAL* 5.7 0.2 - - - -
439A PRO* 4.5 18.5 - - - +
362B GLU 3.0 17.6 + - - -
363B GLU* 3.7 6.5 - - - -
365B VAL* 1.3 77.5 - - - +
367B GLY* 1.3 63.6 + - - +
369B ARG* 3.1 4.7 + - - +
370B GLN* 3.0 25.2 + - - +
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Residues in contact with GLY 367 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363B GLU 2.9 17.3 + - - -
364B GLN* 4.0 0.7 - - - -
366B SER* 1.3 76.6 - - - +
368B GLU* 1.3 61.9 + - - +
370B GLN* 3.3 9.2 + - - +
371B ARG* 3.0 24.0 + - - +
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Residues in contact with GLU 368 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317B LEU* 3.3 48.1 - - + +
320B ARG* 4.7 4.9 + - - -
321B ARG* 2.9 47.9 + - - +
364B GLN 3.0 16.0 + - - +
365B VAL* 3.4 6.0 - - - +
367B GLY* 1.3 77.2 - - - +
369B ARG* 1.3 60.7 + - - +
371B ARG* 3.4 9.6 + - - +
372B LEU* 3.1 22.5 + - - +
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Residues in contact with ARG 369 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
432A GLN* 4.0 18.6 + - - +
433A HIS* 5.1 4.0 - - - -
436A ALA* 3.6 31.9 - - + +
437A VAL* 4.3 12.6 - - + +
310B PHE* 5.9 0.2 - - - -
314B LYS* 3.8 34.1 + - - +
317B LEU* 6.1 0.4 - - - -
318B GLU* 5.3 5.5 + - - +
365B VAL 3.0 14.2 + - - +
366B SER 3.1 7.4 + - - +
368B GLU* 1.3 74.7 - - - +
370B GLN* 1.3 60.6 + - - +
372B LEU* 3.1 15.5 + - - +
373B VAL* 2.8 46.6 + - + +
3C SGN 2.9 31.9 + - - -
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Residues in contact with GLN 370 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366B SER* 3.0 15.7 + - - +
367B GLY* 3.3 11.4 + - - +
369B ARG* 1.3 76.8 - - - +
371B ARG* 1.3 58.0 + - - +
373B VAL* 3.9 7.1 - - + +
374B GLU* 3.0 32.3 + - + +
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Residues in contact with ARG 371 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367B GLY 3.0 13.0 + - - +
368B GLU* 3.6 11.7 - - - +
370B GLN* 1.3 74.8 - - - +
372B LEU* 1.3 60.4 + - - +
374B GLU* 3.2 5.8 + - + +
375B THR* 2.9 40.7 + - - +
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Residues in contact with LEU 372 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310B PHE* 3.6 20.8 - - + -
313B ALA* 4.0 23.8 - - + -
314B LYS* 3.6 41.1 - - + +
317B LEU* 4.4 20.0 - - + -
368B GLU 3.1 14.1 + - - +
369B ARG* 3.5 18.6 - - - +
371B ARG* 1.3 76.3 - - - +
373B VAL* 1.3 62.4 + - - +
375B THR* 3.5 6.9 + - + +
376B HIS* 3.1 25.1 + - - +
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Residues in contact with VAL 373 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310B PHE* 4.4 16.4 - - + -
369B ARG* 2.8 42.3 + - + +
370B GLN* 3.9 6.5 - - + +
372B LEU* 1.3 72.5 - - - +
374B GLU* 1.3 60.2 + - - +
376B HIS* 3.6 2.4 + - - +
377B ALA* 3.0 31.0 + - + +
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Residues in contact with GLU 374 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370B GLN* 3.0 21.9 + - + +
371B ARG* 3.6 6.1 - - + +
373B VAL* 1.3 76.7 - - + +
375B THR* 1.3 67.4 + - - +
377B ALA* 3.3 4.3 + - - +
378B THR* 3.0 29.9 + - - +
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Residues in contact with THR 375 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306B GLU* 5.1 0.4 - - - +
371B ARG* 2.9 26.0 + - - +
372B LEU* 3.8 6.7 - - + -
374B GLU* 1.3 76.8 - - - +
376B HIS* 1.3 63.7 + - - +
378B THR* 3.3 5.5 + - - -
379B ARG* 3.1 60.9 + - - +
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Residues in contact with HIS 376 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B SO4 2.9 29.9 + - - -
306B GLU* 2.7 38.7 + - + +
307B HIS* 4.3 6.6 + - - -
310B PHE* 3.5 56.7 - + + -
372B LEU 3.1 7.5 + - - +
373B VAL 3.9 3.4 - - - +
375B THR* 1.3 77.9 - - - +
377B ALA* 1.3 62.3 + - - +
379B ARG* 3.1 2.8 + - - +
380B VAL* 2.9 46.5 + - + +
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Residues in contact with ALA 377 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373B VAL* 3.0 22.6 + - + +
374B GLU* 3.8 5.4 - - - +
376B HIS* 1.3 79.2 - - + +
378B THR* 1.3 63.4 + - - +
380B VAL* 3.3 7.8 + - - +
381B ILE* 3.1 38.6 + - + +
426B HIS* 6.2 0.9 - - - -
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Residues in contact with THR 378 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374B GLU* 3.0 20.0 + - - +
375B THR* 3.6 6.5 - - - -
377B ALA* 1.3 75.5 - - - +
379B ARG* 1.3 64.6 + - + +
381B ILE* 3.7 6.7 + - - +
382B ALA* 3.2 24.6 + - + +
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Residues in contact with ARG 379 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300B MET* 4.2 14.5 - - - +
306B GLU* 3.0 44.4 + - + -
375B THR* 3.1 39.0 + - + +
376B HIS 3.1 6.9 + - - +
378B THR* 1.3 79.9 - - + +
380B VAL* 1.3 63.9 + - - +
382B ALA* 3.9 5.4 - - - +
383B LEU* 3.1 24.3 + - - +
----------------------------------------------------------
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Residues in contact with VAL 380 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B SO4 3.5 40.4 - - - +
306B GLU* 5.1 2.5 - - + -
376B HIS* 2.9 37.0 + - + +
377B ALA* 3.3 7.4 + - - +
379B ARG* 1.3 77.9 - - - +
381B ILE* 1.3 62.4 + - - +
383B LEU* 3.5 5.3 + - - +
384B ILE* 3.2 29.5 + - + +
426B HIS* 3.6 33.9 - - + +
----------------------------------------------------------
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Residues in contact with ILE 381 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377B ALA* 3.1 25.2 + - + +
378B THR* 4.2 5.8 - - - +
380B VAL* 1.3 76.4 - - - +
382B ALA* 1.3 63.7 + - - +
384B ILE* 3.4 8.1 + - + +
385B ASN* 3.0 46.9 + - - +
423B GLU* 6.2 0.4 - - - +
426B HIS* 4.1 25.6 - - + +
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Residues in contact with ALA 382 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378B THR* 3.2 20.8 + - + +
379B ARG* 3.9 7.0 - - - +
381B ILE* 1.3 73.6 - - - +
383B LEU* 1.3 62.9 + - - +
385B ASN* 3.3 7.3 + - - +
386B ASP* 2.8 43.5 + - - +
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Residues in contact with LEU 383 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379B ARG 3.1 18.6 + - - +
380B VAL* 3.8 5.8 - - - +
381B ILE 3.3 0.2 - - - -
382B ALA* 1.3 78.2 - - - +
384B ILE* 1.3 57.4 + - + +
386B ASP* 3.2 8.2 + - - +
387B GLN* 2.8 44.9 + - + +
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Residues in contact with ILE 384 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380B VAL* 3.2 23.3 + - + +
381B ILE* 3.8 8.3 - - + +
382B ALA 3.3 0.2 - - - -
383B LEU* 1.3 76.5 - - + +
385B ASN* 1.3 64.6 + - - +
387B GLN* 3.4 8.9 + - - +
388B ARG* 3.0 23.8 + - + +
419B ALA* 4.6 7.2 - - - +
422B LYS* 4.5 22.4 - - + +
423B GLU* 3.7 42.4 - - + +
426B HIS* 3.9 40.4 - - + +
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Residues in contact with ASN 385 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381B ILE* 3.0 37.6 + - - +
382B ALA* 3.8 7.0 - - - +
384B ILE* 1.3 77.5 - - - +
386B ASP* 1.3 63.7 + - - +
388B ARG* 3.1 30.0 + - - +
389B ARG* 3.0 54.1 + - - +
423B GLU* 4.3 8.3 - - - +
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Residues in contact with ASP 386 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382B ALA* 2.8 31.1 + - - +
383B LEU* 3.5 8.4 - - - +
385B ASN* 1.3 77.8 - - - +
387B GLN* 1.3 57.6 + - + +
389B ARG* 3.4 18.2 + - - +
390B ALA* 3.0 28.9 + - - +
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Residues in contact with GLN 387 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383B LEU* 2.8 34.3 + - + +
384B ILE* 3.9 8.9 - - - +
385B ASN 3.3 0.2 - - - -
386B ASP* 1.3 74.8 - - + +
388B ARG* 1.3 66.5 + - - +
390B ALA* 3.5 6.0 + - - +
391B ALA* 3.0 25.3 + - - +
415B ARG* 4.9 2.0 + - - +
419B ALA* 4.2 9.2 - - + +
422B LYS* 3.8 27.6 - - - +
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Residues in contact with ARG 388 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384B ILE* 3.0 16.8 + - + +
385B ASN* 3.1 33.9 + - - +
387B GLN* 1.3 78.3 - - - +
389B ARG* 1.3 89.3 + - - +
391B ALA* 3.3 2.8 + - - +
392B LEU* 2.8 28.9 + - + +
416B TYR* 4.0 15.1 - - + -
419B ALA* 3.8 18.6 - - + +
420B GLU* 3.1 35.7 - - - +
423B GLU* 3.2 18.4 + - - -
459B ARG* 3.5 27.3 - - - +
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Residues in contact with ARG 389 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385B ASN* 3.0 44.0 + - - +
386B ASP* 3.9 17.0 + - - +
388B ARG* 1.3 96.6 - - - +
390B ALA* 1.3 65.4 + - - +
392B LEU* 3.3 12.7 + - + +
393B GLU* 3.1 22.9 + - - +
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Residues in contact with ALA 390 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386B ASP 3.0 17.4 + - - +
387B GLN* 3.9 5.6 - - - +
389B ARG* 1.3 76.0 - - - +
391B ALA* 1.3 63.7 + - - +
393B GLU* 3.3 10.9 + - - +
394B GLY* 3.1 19.1 + - - -
415B ARG* 3.5 22.3 + - - +
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Residues in contact with ALA 391 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387B GLN 3.0 18.0 + - - +
388B ARG* 3.5 6.1 - - - +
390B ALA* 1.3 78.8 - - - +
392B LEU* 1.3 61.8 + - - +
394B GLY* 3.1 2.3 + - - -
395B PHE* 2.9 23.0 + - - +
412B ALA* 4.5 2.8 - - - +
415B ARG* 3.8 29.5 - - + +
416B TYR* 3.6 33.9 - - + +
419B ALA* 4.5 1.8 - - + -
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Residues in contact with LEU 392 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388B ARG* 2.8 21.4 + - + +
389B ARG* 3.6 13.2 - - + +
391B ALA* 1.3 73.1 - - - +
393B GLU* 1.3 63.7 + - - +
395B PHE* 3.1 14.1 + - + +
396B LEU* 2.9 31.5 + - + +
416B TYR* 4.0 26.4 - - + -
463B SER* 4.1 15.9 - - - +
466B LEU* 4.8 11.9 - - + -
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Residues in contact with GLU 393 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389B ARG 3.1 13.1 + - - +
390B ALA* 3.3 12.4 + - - +
392B LEU* 1.3 77.1 - - - +
394B GLY* 1.3 57.7 + - - +
396B LEU* 3.4 11.1 + - + +
397B ALA* 3.0 28.4 + - + +
----------------------------------------------------------
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Residues in contact with GLY 394 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390B ALA 3.1 13.6 + - - -
391B ALA* 3.1 4.0 + - - -
393B GLU* 1.3 75.8 - - - +
395B PHE* 1.3 63.0 + - - +
397B ALA* 3.3 7.5 + - - +
398B ALA* 3.1 23.0 + - - +
412B ALA* 3.8 8.9 - - - +
415B ARG* 5.1 9.0 - - - -
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Residues in contact with PHE 395 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391B ALA 2.9 12.2 + - - +
392B LEU* 3.5 18.8 - - + +
394B GLY* 1.3 75.4 - - - +
396B LEU* 1.3 63.7 + - - +
398B ALA* 3.3 3.8 + - - +
399B LEU* 3.1 55.2 + - + +
409B VAL* 4.2 11.2 - - + -
412B ALA* 3.5 17.1 - - + +
413B LEU* 3.5 50.0 - - + -
416B TYR* 4.7 5.6 - + + -
463B SER* 3.3 33.0 - - - -
464B LEU* 5.1 0.4 - - - -
466B LEU* 4.1 12.8 - - + -
467B LEU* 4.3 12.8 - - + -
----------------------------------------------------------
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Residues in contact with LEU 396 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392B LEU* 2.9 26.1 + - + +
393B GLU* 3.5 12.3 - - + +
395B PHE* 1.3 77.5 - - - +
397B ALA* 1.3 56.0 + - - +
399B LEU* 3.1 10.6 + - + +
400B GLN* 3.0 56.2 + - + +
466B LEU* 3.4 36.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 397 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393B GLU* 3.0 19.2 + - + +
394B GLY* 3.6 8.3 - - - +
395B PHE 3.3 0.2 - - - -
396B LEU* 1.3 72.4 - - - +
398B ALA* 1.3 65.6 + - - +
400B GLN* 3.2 20.3 + - - +
401B ALA* 3.6 11.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 398 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394B GLY 3.1 12.7 + - - +
395B PHE 3.7 7.4 - - - +
397B ALA* 1.3 77.4 - - - +
399B LEU* 1.3 61.1 + - - +
400B GLN 3.5 0.3 + - - -
401B ALA* 3.7 15.6 + - - +
404B PRO* 4.2 6.2 - - - +
405B GLN 4.9 0.9 + - - -
408B ARG* 3.9 16.4 - - + +
409B VAL* 3.5 38.3 - - + +
412B ALA* 4.2 3.8 - - + -
----------------------------------------------------------
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Residues in contact with LEU 399 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B PHE* 3.1 29.5 + - + +
396B LEU* 3.1 14.3 + - + +
398B ALA* 1.3 79.7 - - - +
400B GLN* 1.3 59.8 + - + +
401B ALA 3.4 3.0 + - - -
404B PRO* 3.8 15.5 - - - +
409B VAL* 3.6 34.8 - - + -
466B LEU* 3.6 46.7 - - + +
467B LEU* 4.0 14.8 - - + -
470B ASN* 6.2 3.1 - - + -
473B LEU* 4.5 6.0 - - + +
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Residues in contact with GLN 400 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B LEU* 3.0 41.2 + - + +
397B ALA* 3.2 11.3 + - - +
399B LEU* 1.3 79.9 - - + +
401B ALA* 1.3 61.1 + - - +
402B ASP 3.9 0.9 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il