Contacts of the helix formed by residues 177 - 205 (chain B) in PDB entry 3QNQ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 177 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250A HIS* 3.3 28.0 - - + +
253A THR* 5.1 2.9 - - + +
334A GLU* 3.8 5.6 - - - +
175B THR 3.7 2.9 - - - +
176B VAL* 1.3 104.0 - - + +
178B PRO* 1.3 73.8 - - + +
179B ALA* 3.5 6.3 - - + +
180B VAL* 3.6 13.9 - - + +
181B THR* 2.9 17.7 + - - -
2E NAG 3.3 12.3 - - - +
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Residues in contact with PRO 178 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600A ZDM 3.4 61.8 + - - +
177B PRO* 1.3 86.8 - - + +
179B ALA* 1.3 68.4 + - + +
180B VAL 3.2 0.2 - - - -
181B THR* 3.0 17.9 + - - +
182B ARG* 3.1 15.1 + - - +
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Residues in contact with ALA 179 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A ASP* 4.5 15.5 - - - +
30A VAL* 4.6 16.2 - - + -
253A THR* 6.6 0.2 - - + -
600A ZDM 3.9 28.9 + - - +
177B PRO* 3.5 4.5 - - + -
178B PRO* 1.3 82.0 - - + +
180B VAL* 1.3 66.3 + - + +
182B ARG* 3.1 2.3 + - - +
183B SER* 3.1 27.8 + - - -
1E NAG 5.6 2.7 - - - +
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Residues in contact with VAL 180 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250A HIS* 5.3 0.9 - - - +
253A THR* 5.5 0.9 - - - +
382A TRP* 4.1 5.6 - - + -
172B MET* 3.4 23.5 - - + +
176B VAL* 3.2 35.9 - - + -
177B PRO* 3.6 18.1 + - + +
178B PRO 3.2 0.2 - - - -
179B ALA* 1.3 78.4 - - + +
181B THR* 1.3 61.5 + - - +
183B SER* 3.7 0.6 + - - -
184B PHE* 3.3 32.3 + - + +
1E NAG 3.6 43.5 - - + +
2E NAG 5.1 0.2 - - - +
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Residues in contact with THR 181 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170B ILE 5.0 2.4 - - - +
172B MET* 4.1 32.4 - - + +
173B PRO 4.7 0.9 + - - +
174B GLU* 6.0 0.5 - - - -
176B VAL* 3.7 11.3 + - - +
177B PRO 2.9 15.6 + - - -
178B PRO* 3.0 11.5 + - - +
180B VAL* 1.3 78.4 - - - +
182B ARG* 1.3 62.4 + - - +
184B PHE* 3.9 1.0 + - - +
185B ALA* 3.1 23.7 + - + +
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Residues in contact with ARG 182 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A TYR* 5.9 0.8 - - - -
94A GLU* 5.4 7.7 + - - -
600A ZDM 2.6 75.3 + - + +
99B ASP* 2.6 45.6 + - - +
100B ALA 5.2 0.2 - - - +
101B LEU* 3.5 22.0 - - - +
178B PRO 3.1 8.4 + - - +
179B ALA 3.7 2.9 - - - +
181B THR* 1.3 75.6 - - - +
183B SER* 1.3 69.8 + - - +
185B ALA* 3.1 19.8 - - + +
186B ALA* 3.3 6.8 + - - +
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Residues in contact with SER 183 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A VAL* 3.2 35.0 + - - +
33A MET* 5.3 2.2 - - - -
34A PRO* 4.0 25.3 - - - +
600A ZDM 4.2 10.8 - - - +
179B ALA 3.1 9.9 + - - -
180B VAL* 3.9 5.8 - - - -
182B ARG* 1.3 82.3 - - - +
184B PHE* 1.3 67.0 + - - +
186B ALA* 2.8 19.8 + - - +
187B LEU 3.3 7.4 + - - -
1E NAG 4.8 4.5 - - - -
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Residues in contact with PHE 184 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A MET* 5.6 2.5 - - - -
37A ILE* 4.5 9.6 - - + -
381A THR* 3.3 30.1 - - + -
382A TRP* 3.7 28.0 - + - -
383A THR* 3.5 31.2 - - + -
170B ILE* 3.0 36.7 - - + +
172B MET* 3.6 29.2 - - + -
180B VAL* 3.3 27.8 + - + +
183B SER* 1.3 80.6 - - - +
185B ALA* 1.3 65.9 + - - +
187B LEU* 3.4 25.1 + - + +
1E NAG 4.4 8.1 - - + -
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Residues in contact with ALA 185 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164B VAL* 5.6 0.7 - - + -
169B ILE* 3.0 39.4 - - + +
170B ILE 4.0 12.5 + - - +
181B THR* 3.1 16.7 + - + +
182B ARG* 3.1 15.5 - - + +
183B SER 3.1 0.2 - - - -
184B PHE* 1.3 80.0 - - - +
186B ALA* 1.3 63.1 + - - +
188B ILE 3.9 0.9 + - - -
189B PRO* 3.3 6.2 - - - +
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Residues in contact with ALA 186 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600A ZDM 3.5 39.3 - - + -
99B ASP* 5.8 0.9 - - - +
102B ALA* 4.8 0.7 - - + -
160B TYR* 4.0 24.0 - - + +
164B VAL* 5.7 0.2 - - - -
169B ILE* 5.1 0.2 - - - -
182B ARG 3.3 2.6 + - - +
183B SER 2.8 11.0 + - - +
185B ALA* 1.3 79.2 - - - +
187B LEU* 1.3 66.3 + - - +
189B PRO* 2.9 8.9 - - - +
190B GLY* 2.8 23.7 + - - -
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Residues in contact with LEU 187 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A PRO* 3.5 35.8 - - + +
37A ILE* 3.5 33.9 - - + -
38A ILE* 3.9 10.3 - - + +
41A ILE* 6.2 2.2 - - + -
381A THR* 5.6 2.2 - - + -
170B ILE* 4.5 9.2 - - + -
183B SER 3.3 4.4 + - - +
184B PHE* 3.5 39.0 - - + +
185B ALA 3.3 1.0 - - - -
186B ALA* 1.3 75.6 - - - +
188B ILE* 1.3 62.2 + - + +
190B GLY* 3.7 1.1 - - - -
191B PHE* 2.8 35.2 + - + +
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Residues in contact with ILE 188 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163B LEU* 5.8 0.4 - - + -
168B MET* 4.1 35.4 - - + +
169B ILE* 4.8 2.5 - - - -
170B ILE* 3.5 35.9 - - + +
184B PHE 4.4 0.2 + - - -
185B ALA 3.9 2.2 + - - -
186B ALA 2.9 2.8 + - - -
187B LEU* 1.3 75.8 - - + +
189B PRO* 1.3 79.2 - - + +
191B PHE* 3.6 10.6 - - + +
192B ILE* 3.1 26.6 + - + +
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Residues in contact with PRO 189 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160B TYR* 3.4 24.9 - - + +
163B LEU* 3.9 28.7 - - + -
164B VAL* 3.9 23.8 - - + -
168B MET 3.7 15.7 - - - +
169B ILE* 4.0 0.7 - - + -
185B ALA 3.3 12.8 - - - +
186B ALA 2.9 14.6 - - - +
188B ILE* 1.3 85.2 - - + +
190B GLY* 1.3 63.5 + - - +
192B ILE* 2.9 5.7 + - - +
193B VAL* 2.8 27.4 + - - +
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Residues in contact with GLY 190 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A ILE* 3.5 10.8 - - - -
600A ZDM 6.0 2.7 - - - -
106B LEU* 3.7 23.5 - - - +
160B TYR* 4.3 3.6 - - - -
186B ALA* 2.8 21.2 + - - -
187B LEU 3.7 1.3 - - - -
189B PRO* 1.3 71.3 - - - +
191B PHE* 1.3 64.5 + - - +
193B VAL* 3.0 6.0 + - - +
194B VAL* 3.0 23.0 + - - +
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Residues in contact with PHE 191 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A ILE* 3.2 30.2 - - + +
41A ILE* 3.5 50.3 - - + -
42A PHE* 4.2 15.9 - + - -
187B LEU* 2.8 23.7 + - + +
188B ILE* 3.6 11.7 - - + +
190B GLY* 1.3 70.5 - - - +
192B ILE* 1.3 76.1 + - + +
194B VAL* 3.0 15.9 - - - +
195B THR* 2.9 32.8 + - + -
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Residues in contact with ILE 192 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159B ILE* 4.4 9.4 - - + -
163B LEU* 3.4 32.3 - - + -
168B MET* 4.5 20.6 - - + -
188B ILE* 3.1 14.5 + - + +
189B PRO 2.9 7.4 + - - +
191B PHE* 1.3 88.4 - - + +
193B VAL* 1.3 63.4 + - - +
195B THR* 3.3 8.5 + - - -
196B VAL* 3.0 29.4 + - + +
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Residues in contact with VAL 193 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B LEU* 3.5 33.9 - - + -
110B THR* 4.0 6.3 - - - +
156B SER* 3.8 27.4 - - - +
159B ILE* 4.1 18.6 - - + -
160B TYR* 4.1 19.7 - - - +
189B PRO* 2.8 26.7 + - + +
190B GLY 3.0 5.8 + - - +
192B ILE* 1.3 70.8 - - + +
194B VAL* 1.3 68.6 + - - +
196B VAL* 2.8 16.7 + - - +
197B VAL* 3.0 18.8 + - + +
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Residues in contact with VAL 194 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A PHE* 5.5 1.6 - - + -
38A ILE* 3.3 36.1 - - + -
42A PHE* 4.3 9.2 - - + -
72A PRO* 5.6 3.4 - - + -
76A THR* 5.7 2.5 - - + -
106B LEU* 4.6 8.7 - - + -
109B VAL* 4.1 26.0 - - + -
110B THR* 4.6 7.0 - - - +
113B LEU* 3.4 17.3 - - + +
190B GLY 3.0 14.6 + - - +
191B PHE 3.0 21.5 - - - +
193B VAL* 1.3 75.7 - - - +
195B THR* 1.3 56.4 + - - +
197B VAL* 4.3 4.3 - - - -
198B TRP* 2.7 39.1 + - - +
----------------------------------------------------------
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Residues in contact with THR 195 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A PHE* 4.0 10.2 - - + -
191B PHE* 2.9 39.7 + - + -
192B ILE* 3.5 11.9 - - - -
193B VAL 3.0 0.2 - - - -
194B VAL* 1.3 78.8 - - - +
196B VAL* 1.3 58.6 + - + +
198B TRP* 3.4 22.3 - - + +
199B ILE* 2.9 38.6 + - + +
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Residues in contact with VAL 196 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155B ILE* 5.1 1.8 - - + -
159B ILE* 3.8 31.4 - - + -
192B ILE* 3.0 23.8 + - + +
193B VAL* 2.8 9.9 + - - +
195B THR* 1.3 75.0 - - + +
197B VAL* 1.3 56.5 - - + +
199B ILE* 3.1 9.5 + - + +
200B ILE* 2.7 56.3 + - + +
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Residues in contact with VAL 197 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B THR* 3.4 48.7 - - + +
113B LEU* 4.3 6.7 - - + -
114B ALA* 4.3 15.7 - - + -
152B ILE* 4.8 9.2 - - + -
155B ILE* 5.7 5.2 - - + -
156B SER* 4.2 3.8 - - - +
159B ILE* 6.4 0.2 - - + -
193B VAL* 3.0 23.3 + - + +
194B VAL* 3.8 3.6 - - - +
196B VAL* 1.3 76.5 - - + +
198B TRP* 1.3 53.9 + - - +
200B ILE* 3.0 16.0 + - + +
201B ARG* 2.8 34.5 + - - +
212B ILE* 4.8 4.4 - - + +
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Residues in contact with TRP 198 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A PHE* 3.9 22.0 - + + -
68A ALA* 3.1 23.5 + - + -
69A LEU* 3.3 34.3 - - + -
71A TYR* 3.9 9.6 - + + +
72A PRO* 3.6 20.3 - - + +
113B LEU* 3.7 15.8 - - + +
194B VAL 2.7 24.2 + - - +
195B THR* 3.4 22.7 - - + +
197B VAL* 1.3 70.7 - - - +
199B ILE* 1.3 77.0 + - + +
201B ARG* 2.9 11.9 + - - +
202B LEU* 2.9 59.7 + - + +
----------------------------------------------------------
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Residues in contact with ILE 199 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195B THR* 2.9 29.1 + - + +
196B VAL* 3.6 5.8 - - - +
198B TRP* 1.3 93.4 - - + +
200B ILE* 1.3 66.1 + - + +
202B LEU* 3.5 11.7 + - + +
203B ILE* 3.2 36.3 + - + +
----------------------------------------------------------
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Residues in contact with ILE 200 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155B ILE* 4.6 25.4 - - + -
196B VAL* 2.7 40.4 + - + +
197B VAL* 3.2 15.3 - - + +
199B ILE* 1.3 72.2 - - + +
201B ARG* 1.3 68.9 + - - +
203B ILE* 3.2 17.2 + - + +
204B PHE* 3.4 26.9 + - + -
212B ILE* 3.6 21.5 - - + -
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Residues in contact with ARG 201 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A TYR* 3.0 63.7 + - - +
113B LEU* 3.3 30.8 + - - +
114B ALA* 4.1 15.2 + - - +
115B THR 4.9 0.8 + - - -
116B PRO* 3.1 43.2 - - - +
117B PHE* 4.5 3.0 - - - +
197B VAL 2.8 14.7 + - - +
198B TRP* 2.9 11.2 + - - +
200B ILE* 1.3 72.8 - - - +
202B LEU* 1.3 65.0 + - - +
203B ILE 2.8 1.0 + - - -
204B PHE* 2.9 5.4 + - - +
205B GLU* 2.7 39.5 + - - +
211B SER* 6.4 0.9 - - - -
212B ILE* 4.1 20.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 202 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A ALA* 3.8 15.0 - - + -
71A TYR* 3.7 35.9 - - + -
198B TRP* 2.9 58.5 + - + +
199B ILE* 3.8 11.7 - - + +
200B ILE 3.5 0.2 - - - -
201B ARG* 1.3 72.3 - - + +
203B ILE* 1.3 61.1 + - + +
205B GLU* 2.9 23.3 - - + +
206B HIS* 3.3 17.9 + - + +
800B CIT 4.6 9.0 - - - +
----------------------------------------------------------
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Residues in contact with ILE 203 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
199B ILE* 3.2 29.1 + - + +
200B ILE* 3.4 12.1 - - + +
201B ARG 2.8 4.8 + - - -
202B LEU* 1.3 73.8 - - + +
204B PHE* 1.3 72.8 + - + +
206B HIS* 2.8 23.0 + - - +
207B THR* 3.1 17.8 - - + +
----------------------------------------------------------
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Residues in contact with PHE 204 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200B ILE* 3.4 28.7 - - + +
201B ARG 2.9 8.1 + - - +
203B ILE* 1.3 81.8 - - + +
205B GLU* 1.3 60.5 + - - +
206B HIS 2.8 6.8 + - - -
207B THR* 3.2 24.7 + - + -
209B PHE* 2.7 27.7 - + - +
210B GLY* 3.2 7.1 - - - +
211B SER 3.6 16.8 - - - +
212B ILE* 4.6 7.0 - - + +
215B VAL* 3.2 50.7 - - + -
----------------------------------------------------------
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Residues in contact with GLU 205 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A TYR* 3.1 24.3 + - - -
201B ARG* 2.7 39.6 + - - +
202B LEU* 2.9 24.9 - - + +
204B PHE* 1.3 75.3 - - - +
206B HIS* 1.3 66.3 + - + +
207B THR 3.6 2.5 + - - +
210B GLY* 3.5 19.3 + - - +
211B SER* 5.8 0.2 - - - -
800B CIT 3.2 49.3 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il