Contacts of the helix formed by residues 368 - 415 (chain B) in PDB entry 3TKL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 368 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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364B ALA 4.2 7.5 - - - +
365B ILE* 3.0 16.2 + - - +
366B LYS 3.4 0.4 - - - -
367B ASN* 1.3 77.7 - - - +
369B PRO* 1.3 70.2 - - - +
370B ALA* 3.0 20.6 + - - +
371B ALA* 3.2 22.1 + - + +
372B LEU* 2.9 25.3 + - - +
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Residues in contact with PRO 369 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367B ASN 3.5 10.1 - - - +
368B ASP* 1.3 90.2 - - - +
370B ALA* 1.3 56.8 + - - +
372B LEU* 3.3 12.0 + - + +
373B GLU* 2.9 34.3 + - - +
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Residues in contact with ALA 370 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368B ASP* 3.0 12.0 + - - +
369B PRO* 1.3 79.6 - - - +
371B ALA* 1.3 58.4 + - - +
373B GLU* 3.5 4.9 + - - +
374B LYS* 3.0 28.8 + - - +
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Residues in contact with ALA 371 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364B ALA 5.2 0.2 - - - +
365B ILE* 3.5 35.0 - - + +
368B ASP* 3.2 24.2 + - + +
370B ALA* 1.3 76.0 - - - +
372B LEU* 1.3 60.4 + - - +
374B LYS* 3.6 8.3 - - - +
375B ALA* 2.9 30.5 + - - +
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Residues in contact with LEU 372 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355B TYR* 3.8 22.3 - - + +
362B TRP* 4.2 12.1 - - + -
365B ILE* 3.2 37.9 - - + +
366B LYS* 3.4 18.8 - - - +
367B ASN 4.6 1.1 - - - -
368B ASP 2.9 28.1 + - - +
369B PRO* 3.4 10.8 - - + +
371B ALA* 1.3 76.5 - - - +
373B GLU* 1.3 69.3 + - - +
375B ALA* 3.3 4.5 + - - +
376B GLN* 3.1 28.2 + - - +
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Residues in contact with GLU 373 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369B PRO* 2.9 16.9 + - - +
370B ALA* 4.0 5.8 - - - +
372B LEU* 1.3 80.6 - - - +
374B LYS* 1.3 62.3 + - - +
376B GLN* 3.4 21.0 + - + +
377B LYS* 3.0 24.3 + - - +
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Residues in contact with LYS 374 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370B ALA 3.0 18.6 + - - +
371B ALA* 3.6 8.3 - - - +
372B LEU 3.2 0.2 - - - -
373B GLU* 1.3 77.6 - - - +
375B ALA* 1.3 57.1 + - - +
377B LYS* 3.3 17.7 + - - +
378B ASP* 2.6 68.4 + - - +
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Residues in contact with ALA 375 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355B TYR* 3.9 22.0 - - + -
356B LEU 3.0 42.4 + - - +
357B LEU* 4.4 2.7 - - + -
365B ILE* 4.1 13.7 - - + -
371B ALA 2.9 17.0 + - - +
372B LEU 3.3 4.5 + - - +
374B LYS* 1.3 75.7 - - - +
376B GLN* 1.3 61.7 + - - +
378B ASP* 3.6 2.2 + - - +
379B TYR* 3.1 12.0 + - - +
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Residues in contact with GLN 376 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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353B GLN* 3.1 30.9 + - - +
354B PHE 3.4 15.8 - - - +
355B TYR* 2.9 48.0 + - + -
372B LEU* 3.1 10.0 + - - +
373B GLU* 3.8 23.7 + - + +
374B LYS 3.3 0.2 - - - -
375B ALA* 1.3 73.0 - - - +
377B LYS* 1.3 65.7 + - - +
379B TYR* 3.4 3.6 + - - +
380B SER* 3.1 26.7 + - - -
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Residues in contact with LYS 377 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373B GLU 3.0 16.8 + - - +
374B LYS* 3.6 17.6 + - - +
376B GLN* 1.3 76.4 - - - +
378B ASP* 1.3 77.6 + - - +
380B SER* 3.3 5.7 + - - -
381B GLN* 2.9 61.6 + - - +
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Residues in contact with ASP 378 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356B LEU* 3.8 23.5 - - + +
374B LYS* 2.6 51.6 + - - +
375B ALA* 4.0 4.0 - - - +
377B LYS* 1.3 94.0 + - - +
379B TYR* 1.3 60.3 + - - +
381B GLN* 4.0 5.9 - - - +
382B SER* 2.9 32.2 + - - -
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Residues in contact with TYR 379 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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326B GLU* 2.7 42.7 + - - +
339B LEU* 3.9 27.6 - - + +
347B VAL* 3.9 10.8 - - + -
354B PHE* 3.3 52.0 - + + +
355B TYR 4.2 12.8 - - - -
356B LEU* 3.6 15.1 - - + +
375B ALA 3.1 18.1 + - - +
376B GLN 3.6 4.7 - - - +
377B LYS 3.3 0.2 - - - -
378B ASP* 1.3 77.5 - - - +
380B SER* 1.3 70.4 + - - +
382B SER* 3.3 2.3 + - - -
383B LYS* 3.0 41.0 + - + +
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Residues in contact with SER 380 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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376B GLN 3.1 17.8 + - - -
377B LYS* 3.8 5.6 - - - -
379B TYR* 1.3 85.0 - - - +
381B GLN* 1.3 64.6 + - - +
383B LYS* 3.3 7.5 + - - +
384B HIS* 3.0 23.6 + - - +
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Residues in contact with GLN 381 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377B LYS* 2.9 55.4 + - - +
378B ASP* 4.0 6.8 - - - +
380B SER* 1.3 77.1 - - - +
382B SER* 1.3 57.7 + - - +
384B HIS* 3.4 4.9 + - + +
385B ASP* 2.9 45.4 + - - +
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Residues in contact with SER 382 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338B HIS 4.4 0.2 - - - +
339B LEU* 3.3 32.8 - - - +
340B ALA 4.2 10.9 + - - -
356B LEU* 4.0 10.7 - - - +
378B ASP 2.9 20.6 + - - -
381B GLN* 1.3 76.0 - - - +
383B LYS* 1.3 58.4 + - - +
385B ASP* 3.5 7.5 + - - +
386B LEU* 3.1 28.1 + - - +
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Residues in contact with LYS 383 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326B GLU* 4.2 4.6 - - - +
338B HIS* 2.9 61.8 + - - +
339B LEU* 3.8 11.6 - - + +
379B TYR* 3.0 36.4 + - + +
380B SER* 3.5 10.8 - - - +
382B SER* 1.3 74.0 - - - +
384B HIS* 1.3 65.2 + - - +
386B LEU* 3.5 4.0 + - - +
387B ALA* 3.2 19.9 + - - +
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Residues in contact with HIS 384 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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380B SER 3.0 16.1 + - - +
381B GLN* 3.8 6.7 - - + +
383B LYS* 1.3 76.7 - - - +
385B ASP* 1.3 66.2 + - - +
387B ALA* 3.2 5.7 + - - +
388B THR* 3.0 27.6 + - - -
448B HIS* 3.2 64.6 + + - -
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Residues in contact with ASP 385 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309B ASN* 5.0 4.9 - - - +
381B GLN* 2.9 36.9 + - - +
382B SER* 3.9 6.0 + - - +
384B HIS* 1.3 82.8 + - - +
386B LEU* 1.3 60.2 + - - +
388B THR* 3.0 10.1 + - - -
389B ILE* 2.7 42.6 + - + +
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Residues in contact with LEU 386 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312B VAL* 5.1 2.2 - - + -
313B LEU* 5.6 0.4 - - + -
323B TYR* 4.7 1.8 - - + -
334B LEU* 3.9 20.4 - - + -
337B ALA* 3.7 24.7 - - + +
338B HIS 3.2 35.7 - - - +
339B LEU* 3.3 14.6 - - - +
340B ALA* 4.3 19.7 - - + +
382B SER 3.1 17.4 + - - +
383B LYS 3.8 1.3 - - - +
384B HIS 3.3 0.2 - - - -
385B ASP* 1.3 76.2 - - - +
387B ALA* 1.3 57.0 + - - +
389B ILE* 3.3 18.7 + - + +
390B LYS* 2.9 39.7 + - - +
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Residues in contact with ALA 387 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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383B LYS 3.2 12.6 + - - +
384B HIS* 3.2 11.8 + - - +
385B ASP 3.1 0.4 - - - -
386B LEU* 1.3 75.6 - - - +
388B THR* 1.3 60.9 + - - +
390B LYS* 3.4 10.3 + - - +
391B MET* 3.2 37.1 + - + +
448B HIS* 3.3 19.5 - - + -
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Residues in contact with THR 388 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309B ASN* 3.8 20.6 - - - +
384B HIS* 3.0 16.6 + - - -
385B ASP* 3.3 12.8 + - - -
387B ALA* 1.3 77.0 - - - +
389B ILE* 1.3 57.3 + - - +
391B MET* 3.2 5.9 + - - +
392B GLU* 2.9 40.9 + - - +
445B LEU* 4.2 12.3 - - + -
448B HIS* 2.9 26.8 + - + -
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Residues in contact with ILE 389 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309B ASN* 3.5 37.0 - - + +
312B VAL* 3.8 34.3 - - + -
313B LEU* 3.4 42.1 - - + +
334B LEU* 5.4 0.9 - - + -
385B ASP* 2.7 34.2 + - + +
386B LEU* 3.7 15.7 - - + +
388B THR* 1.3 70.1 - - - +
390B LYS* 1.3 60.0 + - - +
392B GLU* 3.8 7.0 - - - +
393B ALA* 2.8 28.1 + - - +
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Residues in contact with LYS 390 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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334B LEU* 2.9 53.9 + - + -
335B LYS* 3.9 13.9 + - - +
337B ALA 2.8 25.7 + - - -
386B LEU* 2.9 27.6 + - - +
387B ALA* 3.7 9.6 - - - +
388B THR 3.3 0.2 - - - -
389B ILE* 1.3 76.0 - - - +
391B MET* 1.3 63.2 + - + +
393B ALA* 3.3 8.1 + - - +
394B LEU* 3.2 27.7 + - + +
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Residues in contact with MET 391 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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387B ALA* 3.2 27.4 + - + +
388B THR 3.2 7.4 + - - +
390B LYS* 1.3 78.8 - - + +
392B GLU* 1.3 65.0 + - - +
394B LEU* 3.3 10.1 + - - +
395B ILE* 3.2 27.2 + - - +
444B MET* 3.7 40.9 - - + +
445B LEU* 4.0 16.6 - - + -
448B HIS* 3.7 47.3 - - + +
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Residues in contact with GLU 392 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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305B ALA* 5.5 0.9 - - - +
306B LYS* 3.8 33.5 + - - +
309B ASN* 2.7 42.7 + - + +
388B THR* 2.9 25.5 + - + +
389B ILE* 4.0 3.4 - - - +
391B MET* 1.3 76.4 - - - +
393B ALA* 1.3 56.3 + - - +
395B ILE* 3.1 10.1 + - + +
396B HIS* 2.8 48.8 + - + +
445B LEU* 4.0 24.3 - - + +
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Residues in contact with ALA 393 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259B GLU* 6.4 0.2 - - - -
260B LEU* 3.8 30.1 - - + +
313B LEU* 4.2 11.2 - - + -
334B LEU* 4.9 8.7 - - + -
389B ILE 2.8 18.6 + - - +
390B LYS* 3.3 10.5 - - - +
391B MET 3.2 0.2 - - - -
392B GLU* 1.3 77.9 - - - +
394B LEU* 1.3 58.0 + - - +
396B HIS* 3.4 4.0 + - - +
397B LYS* 3.0 29.8 + - - +
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Residues in contact with LEU 394 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257B SER* 3.8 33.0 - - - +
390B LYS* 3.2 14.3 + - + +
391B MET* 3.5 11.2 - - - +
392B GLU 3.2 0.2 - - - -
393B ALA* 1.3 78.6 - - - +
395B ILE* 1.3 57.2 + - - +
397B LYS* 3.3 6.2 + - + +
398B LEU* 3.0 33.7 + - + +
437B LYS* 6.4 0.9 - - + -
441B LEU* 3.8 30.3 - - + -
444B MET* 6.6 0.2 - - + -
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Residues in contact with ILE 395 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75A THR* 5.4 0.7 - - + -
306B LYS* 5.4 6.1 - - - +
391B MET 3.2 14.5 + - - +
392B GLU* 3.1 10.5 + - + +
394B LEU* 1.3 76.8 - - - +
396B HIS* 1.3 64.2 + - + +
398B LEU 3.5 0.2 + - - -
399B SER* 2.9 31.2 + - - -
438B LEU* 3.6 23.4 - - + +
441B LEU* 3.8 37.9 - - + +
442B GLN* 3.5 37.2 - - - +
444B MET* 5.1 0.9 - - + -
445B LEU* 3.9 19.3 - - + -
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Residues in contact with HIS 396 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
260B LEU* 4.0 12.3 - - + -
268B LYS* 3.9 22.3 + - + +
272B PHE* 3.5 37.0 - + - -
306B LYS* 4.4 18.8 + - + +
309B ASN* 6.3 0.2 - - - +
310B LEU* 3.9 27.1 - - + +
313B LEU* 6.1 0.2 - - + -
392B GLU* 2.8 43.2 + - + +
393B ALA* 3.6 8.5 - - - +
395B ILE* 1.3 75.1 - - + +
397B LYS* 1.3 60.7 + - - +
399B SER* 2.8 21.1 + - - -
400B LEU* 3.0 20.6 + - - +
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Residues in contact with LYS 397 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
258B GLU* 3.9 36.2 - - - +
259B GLU 3.1 18.7 + - - +
260B LEU* 3.6 13.4 - - + +
261B SER* 4.5 1.6 - - - +
264B GLU* 2.8 39.0 + - - +
393B ALA 3.0 18.4 + - - +
394B LEU* 3.6 8.1 - - + +
395B ILE 3.3 0.2 - - - -
396B HIS* 1.3 76.4 - - - +
398B LEU* 1.3 64.3 + - - +
400B LEU* 3.3 4.7 + - - +
401B GLU* 3.1 21.8 + - - +
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Residues in contact with LEU 398 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394B LEU* 3.0 17.8 + - + +
395B ILE 3.7 3.4 - - - +
397B LYS* 1.3 76.9 - - - +
399B SER* 1.3 61.2 + - - +
401B GLU* 3.1 17.5 + - - +
402B MET* 3.0 26.5 + - + +
434B LEU* 4.0 38.6 - - + +
437B LYS* 3.9 17.5 - - + -
438B LEU* 3.8 39.7 - - + +
441B LEU* 3.8 20.6 - - + -
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Residues in contact with SER 399 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76A ILE* 3.8 18.4 - - - -
268B LYS* 3.3 18.2 + - - -
395B ILE* 2.9 17.6 + - - -
396B HIS* 2.8 20.4 + - - -
398B LEU* 1.3 76.4 - - - +
400B LEU* 1.3 55.8 + - - +
402B MET* 3.2 16.5 + - - +
403B GLU* 2.9 35.4 + - - +
438B LEU* 4.4 5.8 - - - +
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Residues in contact with LEU 400 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
260B LEU* 4.2 5.6 - - + -
264B GLU* 3.6 46.0 - - + +
267B GLU* 3.7 31.9 - - + +
268B LYS* 4.0 32.8 - - + +
396B HIS 3.0 16.9 + - - +
397B LYS 3.6 4.5 - - - +
399B SER* 1.3 77.8 + - - +
401B GLU* 1.3 65.4 + - - +
403B GLU* 3.4 17.4 + - + +
404B LYS* 3.2 26.5 + - - +
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Residues in contact with GLU 401 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397B LYS 3.1 12.4 + - - +
398B LEU* 3.3 18.9 - - - +
400B LEU* 1.3 76.8 - - - +
402B MET* 1.3 62.8 + - - +
404B LYS* 3.0 39.7 - - - +
405B GLN* 3.3 21.5 + - + +
430B LYS* 4.3 12.8 + - - -
434B LEU* 3.8 26.1 - - + +
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Residues in contact with MET 402 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76A ILE* 3.4 28.7 - - + -
398B LEU* 3.0 13.2 + - - +
399B SER* 3.6 10.1 - - - +
401B GLU* 1.3 75.4 - - - +
403B GLU* 1.3 61.8 + - - +
405B GLN* 3.1 24.0 + - - +
406B LEU* 3.3 3.6 + - - +
431B HIS* 3.3 31.6 - - + +
434B LEU* 3.7 39.3 - - + +
435B ASN* 4.0 20.2 - - - +
438B LEU* 3.1 36.1 - - + -
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Residues in contact with GLU 403 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76A ILE* 4.5 10.4 - - + +
78A SER* 5.7 1.3 + - - -
79A SER* 3.7 31.8 + - - +
82A ARG* 4.1 19.1 + - - +
267B GLU* 4.3 6.8 - - - +
268B LYS* 3.1 26.1 + - - -
399B SER* 2.9 30.2 + - - +
400B LEU* 3.6 21.3 - - + +
402B MET* 1.3 77.2 - - - +
404B LYS* 1.3 58.4 + - - +
406B LEU* 3.0 27.0 + - - +
407B GLU* 3.7 5.5 + - - +
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Residues in contact with LYS 404 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400B LEU 3.2 9.8 + - - +
401B GLU* 3.0 43.1 - - - +
403B GLU* 1.3 78.1 - - - +
405B GLN* 1.3 61.1 + - + +
406B LEU 3.3 0.2 - - - -
407B GLU* 3.8 15.4 - - - +
408B THR* 3.2 22.2 + - - -
----------------------------------------------------------
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Residues in contact with GLN 405 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401B GLU* 3.3 21.7 + - + +
402B MET* 3.1 12.4 + - - +
403B GLU 3.1 0.8 - - - -
404B LYS* 1.3 78.7 - - + +
406B LEU* 1.3 54.9 + - - +
408B THR* 3.1 6.6 + - - -
409B ILE* 2.7 43.2 + - + +
427B LEU* 4.0 23.7 - - + +
430B LYS* 3.8 28.1 - - - +
431B HIS* 2.9 36.5 + - - +
434B LEU* 3.6 20.1 - - - +
----------------------------------------------------------
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Residues in contact with LEU 406 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A VAL* 4.6 0.4 - - + -
65A TRP* 4.0 28.1 - - + -
76A ILE* 4.3 6.3 - - + -
79A SER* 3.2 33.0 - - - +
80A TYR* 3.6 32.1 - - + -
402B MET 3.5 8.5 - - - +
403B GLU 3.0 6.7 + - - +
405B GLN* 1.3 73.5 - - - +
407B GLU* 1.3 66.1 - - - +
409B ILE* 3.2 11.2 + - + +
410B ASN* 3.0 25.5 + - - +
431B HIS* 3.4 30.3 - - + +
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Residues in contact with GLU 407 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
403B GLU 3.7 4.0 + - - +
404B LYS* 3.8 20.4 - - - +
406B LEU* 1.3 77.7 - - - +
408B THR* 1.3 57.9 + - - +
410B ASN* 3.3 21.0 + - - +
411B ASP* 3.7 9.4 + - - +
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Residues in contact with THR 408 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
404B LYS 3.2 14.4 + - - -
405B GLN* 3.1 8.8 + - - -
407B GLU* 1.3 77.5 - - - +
409B ILE* 1.3 63.6 + - - +
410B ASN 3.0 1.6 - - - -
411B ASP* 2.8 20.3 - - - +
412B LEU* 3.0 27.2 - - + +
427B LEU* 3.6 19.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE 409 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A PHE* 4.5 18.4 - - + -
65A TRP* 4.5 7.2 - - + -
405B GLN 2.7 33.3 + - - +
406B LEU* 3.2 16.1 + - + +
408B THR* 1.3 73.1 - - - +
410B ASN* 1.3 62.7 + - - +
412B LEU* 3.8 4.4 - - - +
413B ILE* 3.1 23.9 + - + +
424B ALA* 3.8 17.1 - - + +
427B LEU* 3.5 26.7 - - + +
428B LEU* 3.8 43.3 - - + +
431B HIS* 4.3 9.2 - - + -
----------------------------------------------------------
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Residues in contact with ASN 410 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A PHE* 4.4 8.3 - - - -
63A GLN* 3.2 31.6 + - - -
65A TRP* 4.7 6.6 - - + -
406B LEU 3.0 13.0 + - - +
407B GLU* 3.3 15.3 + - - +
408B THR 3.0 1.2 - - - -
409B ILE* 1.3 75.6 - - - +
411B ASP* 1.3 69.0 + - - +
413B ILE* 3.1 12.2 - - - +
414B MET* 2.9 37.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP 411 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407B GLU 3.7 4.8 + - - +
408B THR* 2.8 35.2 - - - +
410B ASN* 1.3 82.1 - - - +
412B LEU* 1.3 78.3 + - - +
414B MET* 2.9 20.8 + - + +
415B SER* 3.0 16.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 412 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408B THR* 3.0 41.3 - - + +
411B ASP* 1.3 95.4 + - - +
413B ILE* 1.3 53.0 + - - +
415B SER* 3.3 12.5 - - - -
420B GLU* 3.5 34.4 - - + +
421B ASN* 2.7 26.2 - - - +
423B GLU* 4.2 19.3 - - + +
424B ALA* 3.7 29.8 - - + +
427B LEU* 4.3 8.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE 413 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A PHE* 3.0 47.8 - - + +
50A ILE* 3.8 29.3 - - + +
61A LYS* 5.2 0.7 + - - -
409B ILE* 3.1 13.2 + - + +
410B ASN 3.1 10.3 - - - +
412B LEU* 1.3 77.6 - - - +
414B MET* 1.3 74.8 - - - +
415B SER 3.1 7.8 - - - +
421B ASN* 3.8 15.6 - - + +
424B ALA* 4.1 15.0 - - + -
425B THR* 6.0 1.1 - - - +
----------------------------------------------------------
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Residues in contact with MET 414 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8A TYR* 4.1 15.9 - - + +
11A LEU* 4.1 19.5 - - + -
50A ILE* 4.6 4.0 - - - -
61A LYS* 3.6 56.0 + - + +
63A GLN* 4.2 17.7 - - - +
410B ASN* 2.9 31.4 + - - +
411B ASP* 3.1 18.2 - - + +
413B ILE* 1.3 86.2 - - - +
415B SER* 1.3 63.2 + - - +
416B THR* 3.6 1.7 + - - -
----------------------------------------------------------
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Residues in contact with SER 415 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
411B ASP 3.0 10.8 + - - -
412B LEU 3.3 10.5 - - - -
413B ILE 3.1 3.3 - - - +
414B MET* 1.3 82.3 - - - +
416B THR* 1.3 56.6 + - - +
417B ASP* 3.1 22.2 + - - -
420B GLU* 2.8 21.9 + - - -
421B ASN* 2.4 26.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il