Contacts of the helix formed by residues 221 - 259 (chain A) in PDB entry 3VG9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 221 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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211A MET* 4.4 0.2 - - - -
217A PRO* 6.4 0.7 - - - -
220A ARG* 1.3 86.1 - - - +
222A ARG* 1.3 63.3 + - - +
223A SER* 4.0 5.4 - - - +
224A THR* 3.8 21.6 - - - +
225A LEU* 3.4 14.9 + - - +
49B TYR* 6.2 0.7 - - + -
56B ASP* 2.9 25.8 - - - +
110C TYR* 5.8 1.1 - - + +
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Residues in contact with ARG 222 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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208A LEU* 3.8 20.8 + - + +
211A MET* 3.1 45.3 - - + -
212A GLU* 3.4 26.9 + - - -
216A LEU* 3.4 26.9 - - + +
220A ARG 3.4 1.0 + - - -
221A ALA* 1.3 69.9 - - - +
223A SER* 1.3 66.8 + - - +
225A LEU* 3.0 4.6 + - - +
226A GLN* 2.9 56.5 + - - +
56B ASP* 3.0 9.2 + - - +
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Residues in contact with SER 223 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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221A ALA* 4.0 4.9 - - - +
222A ARG* 1.3 77.7 - - - +
224A THR* 1.3 63.8 + - - -
226A GLN* 3.4 16.2 + - - +
227A LYS* 2.9 39.3 + - - +
49B TYR* 2.7 28.3 + - - -
54B LEU 4.0 10.5 + - - -
55B ALA 5.3 0.2 - - - -
56B ASP* 2.9 22.4 + - - -
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Residues in contact with THR 224 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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220A ARG* 4.7 8.5 - - - +
221A ALA* 3.8 23.4 + - - +
222A ARG 3.2 0.6 - - - -
223A SER* 1.3 78.6 + - - +
225A LEU* 1.3 68.7 + - - +
227A LYS* 3.0 8.8 + - - +
228A GLU* 3.0 28.7 + - - +
49B TYR* 3.5 11.4 + - - -
101C ASN 5.3 1.1 - - - +
102C TYR* 3.8 31.8 - - + -
110C TYR* 3.2 25.1 + - - +
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Residues in contact with LEU 225 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A ILE* 4.0 17.9 - - + -
204A ALA* 4.0 4.9 - - + +
207A GLN* 3.6 35.4 - - + +
208A LEU* 3.5 29.4 - - + -
211A MET* 4.4 6.7 - - + -
220A ARG* 3.3 32.5 - - - +
221A ALA 3.4 11.3 + - - +
222A ARG 3.0 9.2 + - - +
224A THR* 1.3 81.1 - - - +
226A GLN* 1.3 65.9 + - - +
228A GLU* 3.1 10.2 + - - +
229A VAL* 2.9 32.8 + - + +
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Residues in contact with GLN 226 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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208A LEU* 3.5 26.7 - - + +
222A ARG* 2.9 49.0 + - - +
223A SER* 3.6 21.9 + - - +
225A LEU* 1.3 73.8 - - - +
227A LYS* 1.3 58.7 + - + +
229A VAL* 3.4 7.2 + - - +
230A HIS* 2.9 30.1 + - - +
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Residues in contact with LYS 227 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223A SER* 2.9 31.6 + - - +
224A THR 3.0 5.6 + - - +
226A GLN* 1.3 77.5 - - + +
228A GLU* 1.3 58.4 + - - +
230A HIS* 3.2 8.8 + - - +
231A ALA* 3.0 26.5 + - - +
49B TYR* 2.5 39.3 + - + +
53B ASN* 3.1 34.5 - - - +
54B LEU 4.0 4.0 + - - +
102C TYR* 3.3 34.8 - - + +
104C ASP* 5.1 5.2 - - + +
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Residues in contact with GLU 228 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A ARG* 4.7 8.5 + - - +
105A ALA* 4.6 7.3 - - - +
106A ILE* 3.8 27.6 - - + +
220A ARG* 2.5 38.8 + - - -
224A THR* 3.0 16.6 + - - +
225A LEU* 3.4 14.5 - - + +
227A LYS* 1.3 76.7 - - - +
229A VAL* 1.3 57.0 + - - +
231A ALA* 3.5 2.6 + - - +
232A ALA* 2.9 25.8 + - - +
101C ASN 4.9 0.5 - - - +
102C TYR* 3.3 29.6 - - + +
103C TYR 3.7 23.0 + - - +
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Residues in contact with VAL 229 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A ILE* 4.2 11.4 - - + -
200A ILE* 4.8 4.7 - - + -
201A PHE* 4.4 11.2 - - + -
204A ALA* 3.5 30.1 - - + -
205A ARG* 4.5 6.5 - - - +
208A LEU* 6.0 2.7 - - + -
225A LEU* 2.9 29.0 + - + +
226A GLN* 3.8 7.2 - - - +
228A GLU* 1.3 76.3 - - - +
230A HIS* 1.3 60.3 + - - +
232A ALA* 3.1 7.7 + - - +
233A LYS* 2.9 54.2 + - - +
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Residues in contact with HIS 230 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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226A GLN 2.9 17.6 + - - +
227A LYS* 3.5 7.9 - - - +
229A VAL* 1.3 77.0 - - - +
231A ALA* 1.3 64.4 + - - +
233A LYS* 3.2 15.6 + - - +
234A SER* 3.0 30.7 + - - -
291A ARG* 3.4 46.9 + - - -
403A STE 5.1 2.7 - - - -
404A STE 4.2 9.2 + - - -
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Residues in contact with ALA 231 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A ARG* 5.9 0.2 - - - -
227A LYS 3.0 11.6 + - - +
228A GLU 3.6 5.6 - - - +
230A HIS* 1.3 80.7 - - - +
232A ALA* 1.3 56.8 + - - +
234A SER* 3.2 9.0 + - - -
235A LEU* 2.9 33.8 + - - +
292A ILE* 5.8 2.8 - - + +
103C TYR* 3.5 33.4 - - + +
104C ASP* 3.9 20.4 - - - +
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Residues in contact with ALA 232 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A ARG* 4.6 10.9 - - + +
106A ILE* 3.9 19.3 - - + -
197A TYR* 3.8 12.1 - - + -
200A ILE* 4.7 2.2 - - + -
201A PHE* 3.9 16.4 - - + -
228A GLU 2.9 16.0 + - - +
229A VAL* 3.1 10.3 + - - +
231A ALA* 1.3 76.4 - - - +
233A LYS* 1.3 57.1 + - - +
235A LEU* 3.1 8.3 + - - +
236A ALA* 2.9 28.2 + - - +
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Residues in contact with LYS 233 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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201A PHE* 3.5 29.6 - - + -
205A ARG* 2.8 45.9 - - - +
229A VAL* 2.9 31.7 + - + +
230A HIS* 3.5 15.2 + - - +
232A ALA* 1.3 73.2 - - - +
234A SER* 1.3 65.9 + - - +
236A ALA* 3.1 2.2 + - - +
237A ILE* 2.9 27.8 + - - +
291A ARG* 4.1 9.4 - - - +
404A STE 4.0 31.4 - - + +
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Residues in contact with SER 234 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230A HIS* 3.0 19.0 + - - -
231A ALA* 3.5 11.6 - - - -
233A LYS* 1.3 77.3 - - - +
235A LEU* 1.3 62.1 - - - +
237A ILE* 3.4 16.3 + - - +
238A ILE* 3.7 9.7 + - - +
287A ILE* 4.5 5.8 - - - +
291A ARG* 2.9 54.7 + - - +
292A ILE* 4.5 15.3 - - - -
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Residues in contact with LEU 235 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41A THR* 4.1 3.4 - - + -
45A VAL* 4.7 14.8 - - + -
95A LEU* 5.1 1.6 - - - +
98A ILE* 3.8 21.8 - - + +
102A ARG* 3.7 34.8 - - + -
197A TYR* 3.8 14.3 + - - +
231A ALA 2.9 14.9 + - - +
232A ALA 3.1 7.8 + - - +
234A SER* 1.3 78.8 - - - +
236A ALA* 1.3 60.3 + - - +
238A ILE* 3.3 24.0 - - + +
239A VAL* 3.8 5.9 + - - +
288A TYR* 5.1 10.8 - - + +
292A ILE* 5.0 13.0 - - + -
103C TYR* 3.8 28.5 - - + +
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Residues in contact with ALA 236 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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197A TYR* 3.7 39.9 + - + -
201A PHE* 4.2 10.1 - - + -
232A ALA 2.9 15.8 + - - +
233A LYS* 3.1 4.7 + - - +
235A LEU* 1.3 73.6 - - - +
237A ILE* 1.3 59.9 + - - +
238A ILE 3.2 0.4 - - - -
239A VAL* 3.1 6.4 + - - +
240A GLY* 3.0 23.9 + - - -
404A STE 4.2 18.1 - - + +
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Residues in contact with ILE 237 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233A LYS 2.9 17.0 + - - +
234A SER* 3.5 9.0 - - - +
235A LEU 3.3 0.4 - - - -
236A ALA* 1.3 77.1 - - - +
238A ILE* 1.3 61.8 + - - +
240A GLY* 3.1 4.2 + - - +
241A LEU* 2.9 36.0 + - + +
287A ILE* 4.4 22.4 - - + -
291A ARG* 3.9 38.1 - - + +
403A STE 4.6 31.0 - - + -
404A STE 3.8 31.0 - - + -
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Residues in contact with ILE 238 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48A LEU* 4.4 4.5 - - + -
95A LEU* 3.7 22.0 - - + -
234A SER 3.9 9.2 - - - +
235A LEU* 3.3 20.4 - - + +
236A ALA 3.2 0.2 - - - -
237A ILE* 1.3 78.3 - - - +
239A VAL* 1.3 57.1 + - - +
241A LEU* 3.3 5.8 + - - +
242A PHE* 2.9 27.8 + - + +
280A ASN* 5.3 1.6 - - - +
284A ASN* 3.4 35.8 - - - +
287A ILE* 3.6 34.5 - - + -
288A TYR* 4.0 24.5 - - + +
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Residues in contact with VAL 239 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95A LEU* 3.9 22.0 - - + +
190A LEU* 4.0 14.1 - - + +
193A MET* 3.4 44.0 - - + -
194A LEU* 5.7 2.5 - - - +
197A TYR* 4.2 21.1 - - + +
235A LEU 4.3 3.8 - - - +
236A ALA* 3.1 10.8 + - - +
238A ILE* 1.3 76.6 - - - +
240A GLY* 1.3 64.3 + - - +
242A PHE* 3.0 10.6 + - - +
243A ALA* 2.9 21.8 + - - +
404A STE 5.1 11.7 - - + -
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Residues in contact with GLY 240 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236A ALA 3.0 12.9 + - - -
237A ILE* 3.1 5.5 + - - -
239A VAL* 1.3 77.3 - - - +
241A LEU* 1.3 59.7 + - - +
243A ALA* 3.4 4.0 + - - +
244A LEU* 2.9 26.3 + - - +
403A STE 4.1 16.4 - - - +
404A STE 4.2 26.9 - - - +
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Residues in contact with LEU 241 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237A ILE* 2.9 25.7 + - + +
238A ILE* 3.8 6.1 - - - +
240A GLY* 1.3 75.8 - - - +
242A PHE* 1.3 68.1 + - - +
244A LEU* 3.2 19.3 + - + +
245A CYS* 2.9 29.1 + - - +
280A ASN* 4.8 1.3 - - - +
283A VAL* 4.4 25.6 - - + -
284A ASN* 6.2 0.2 - - - +
287A ILE* 4.3 26.2 - - + -
403A STE 4.1 26.9 - - + -
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Residues in contact with PHE 242 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88A THR* 3.5 18.8 - - + -
91A SER* 3.6 25.6 - - - -
92A ILE* 3.3 38.1 - - + -
95A LEU* 3.8 19.7 - - + -
186A VAL* 5.4 5.4 - - + -
190A LEU* 4.4 14.8 - - + -
238A ILE* 2.9 15.1 + - + +
239A VAL 3.2 9.6 - - - +
241A LEU* 1.3 75.2 - - - +
243A ALA* 1.3 59.9 + - - +
245A CYS* 2.8 18.4 + - - +
246A TRP* 3.0 31.5 + + + -
280A ASN* 3.5 36.7 + - - +
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Residues in contact with ALA 243 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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190A LEU* 3.7 16.6 - - + -
239A VAL 2.9 10.6 + - - +
240A GLY 3.5 9.4 - - - +
242A PHE* 1.3 76.4 - - - +
244A LEU* 1.3 57.1 + - - +
245A CYS 2.8 9.8 + - - -
246A TRP* 4.7 0.9 - - - +
247A LEU* 2.8 36.2 + - + +
403A STE 4.6 5.6 - - + -
404A STE 3.5 32.3 - - + -
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Residues in contact with LEU 244 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240A GLY 2.9 17.6 + - - +
241A LEU* 3.2 24.0 + - + +
243A ALA* 1.3 75.0 - - - +
245A CYS* 1.3 56.7 + - - +
247A LEU* 4.7 3.4 - - + -
248A PRO* 3.3 22.1 - - + +
276A LEU* 4.0 6.4 - - - +
403A STE 4.0 32.2 - - + +
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Residues in contact with CYS 245 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241A LEU* 2.9 13.6 + - - +
242A PHE 2.8 10.0 + - - +
243A ALA 2.8 1.8 - - - -
244A LEU* 1.3 78.1 - - - +
246A TRP* 1.3 62.1 + - + +
247A LEU 3.1 3.4 - - - -
248A PRO* 2.9 17.7 - - - +
249A LEU* 4.5 2.1 + - - +
273A ALA 5.1 0.2 - - - +
276A LEU* 2.7 41.5 - - + +
277A SER* 4.4 1.7 + - - -
279A THR* 3.9 9.2 - - - -
280A ASN* 3.4 42.4 - - + -
283A VAL* 6.0 1.6 - - - -
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Residues in contact with TRP 246 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84A VAL* 4.2 17.7 - - + -
88A THR* 3.0 36.1 + - + +
186A VAL* 5.9 4.5 - - + -
242A PHE* 3.0 43.1 + + + +
243A ALA* 5.7 0.7 - - - -
245A CYS* 1.3 81.5 - - + +
247A LEU* 1.3 57.7 + - - +
248A PRO 3.5 0.2 - - - -
249A LEU* 3.5 14.7 + - + +
250A HIS* 3.0 49.1 + + + +
274A ILE* 5.9 2.0 - - + -
277A SER* 3.2 47.2 + - - -
278A HIS* 5.3 4.9 - + - -
280A ASN* 3.6 20.2 - - - +
401A ZMA 3.5 38.4 - + - -
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Residues in contact with LEU 247 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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182A PHE* 4.7 10.3 - - + -
187A LEU* 5.2 4.7 - - + -
190A LEU* 5.7 2.9 - - + -
243A ALA* 2.8 23.8 + - + +
244A LEU* 4.7 3.1 - - + -
246A TRP* 1.3 74.4 - - - +
248A PRO* 1.3 73.3 - - + +
250A HIS* 3.3 4.8 + - - +
251A ILE* 2.9 51.2 + - + +
403A STE 3.7 30.7 - - + -
404A STE 5.4 6.1 - - + -
407A STE 3.5 38.1 - - + -
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Residues in contact with PRO 248 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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244A LEU* 3.3 18.2 - - + +
245A CYS 2.9 24.9 - - - +
247A LEU* 1.3 89.1 - - + +
249A LEU* 1.3 62.7 + - - +
251A ILE* 3.1 14.0 + - + +
252A ILE* 2.9 30.1 + - + +
273A ALA* 4.4 6.7 - - + -
276A LEU* 3.7 17.9 - - + -
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Residues in contact with LEU 249 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245A CYS 4.5 0.6 + - - +
246A TRP* 3.5 24.6 + - + +
247A LEU 3.3 0.6 - - - -
248A PRO* 1.3 79.5 - - - +
250A HIS* 1.3 69.0 + - + +
252A ILE* 3.2 6.9 + - + +
253A ASN* 2.9 37.4 + - - +
270A MET* 6.2 2.0 - - + -
273A ALA* 3.2 42.9 - - + +
274A ILE* 4.3 5.2 - - + +
277A SER* 4.5 1.1 - - - +
401A ZMA 2.8 62.4 - - + +
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Residues in contact with HIS 250 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88A THR* 6.0 2.0 - - + -
177A MET* 3.6 9.8 + - + -
178A VAL* 5.4 0.2 - - - +
181A ASN* 3.7 15.1 + - - -
182A PHE* 3.1 66.9 + + + -
186A VAL* 4.7 13.9 - - + +
246A TRP* 3.0 42.2 + + + +
247A LEU 3.9 0.7 - - - +
249A LEU* 1.3 82.1 - - + +
251A ILE* 1.3 50.5 + - - +
253A ASN* 4.3 4.3 - - + +
254A CYS* 2.5 37.2 + - - +
401A ZMA 3.5 32.4 - + - -
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Residues in contact with ILE 251 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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182A PHE* 4.6 0.7 - - + -
247A LEU* 2.9 50.9 + - + +
248A PRO* 3.1 11.4 + - + +
250A HIS* 1.3 76.0 - - - +
252A ILE* 1.3 68.9 + - + +
254A CYS* 3.0 7.0 + - + +
255A PHE* 2.9 31.9 + - + +
407A STE 4.4 33.0 - - + -
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Residues in contact with ILE 252 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
248A PRO* 2.9 18.8 + - + +
249A LEU* 3.3 7.0 - - - +
251A ILE* 1.3 78.8 - - + +
253A ASN* 1.3 70.0 + - - +
255A PHE* 3.4 9.6 - - + -
256A THR* 2.9 32.1 + - - +
264A HIS* 5.6 0.9 - - + -
265A ALA* 4.0 14.6 - - + -
269A LEU* 3.7 31.2 - - + +
270A MET* 3.6 39.3 - - - -
273A ALA* 4.1 21.1 - - + -
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Residues in contact with ASN 253 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174A MET* 3.7 14.9 - - - +
177A MET* 3.7 23.8 - - + +
178A VAL* 3.2 13.7 - - + +
249A LEU* 2.9 26.2 + - - +
250A HIS* 4.3 6.5 - - + +
252A ILE* 1.3 81.2 - - - +
254A CYS* 1.3 64.0 + - - +
256A THR* 4.3 1.6 - - - -
257A PHE* 2.9 28.8 + - - +
270A MET* 4.2 3.1 - - - +
401A ZMA 3.2 45.1 + - - -
----------------------------------------------------------
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Residues in contact with CYS 254 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A VAL* 3.7 13.2 - - - -
182A PHE* 4.0 16.6 - - + -
183A PHE* 4.9 5.6 - - - -
250A HIS 2.5 25.0 + - - +
251A ILE* 3.0 12.1 + - - +
253A ASN* 1.3 79.6 - - - +
255A PHE* 1.3 59.3 + - - +
257A PHE* 3.6 2.6 - - - +
258A PHE* 3.0 43.5 + - - -
407A STE 4.0 34.1 - - - -
----------------------------------------------------------
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Residues in contact with PHE 255 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
251A ILE* 2.9 20.9 + - + +
252A ILE* 3.4 17.5 - - + -
254A CYS* 1.3 70.6 - - + +
256A THR* 1.3 96.3 + - - +
257A PHE 3.1 1.6 - - - -
258A PHE* 3.9 3.4 - - - +
259A CYS* 3.4 24.1 + - + +
263A SER* 5.4 8.2 - - - +
264A HIS 5.7 5.6 - - - -
265A ALA* 5.6 6.3 - - + -
407A STE 3.9 40.5 - - + +
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Residues in contact with THR 256 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169A GLU* 4.8 1.8 - - - +
174A MET* 3.5 24.9 - - + +
252A ILE* 2.9 26.2 + - - +
253A ASN* 4.0 1.8 - - - -
255A PHE* 1.3 92.0 - - - +
257A PHE* 1.3 58.5 + - - +
259A CYS 3.2 20.4 - - - +
260A PRO* 3.5 6.6 - - - +
263A SER 4.4 10.9 - - - +
264A HIS* 3.7 40.4 + - + +
265A ALA 4.0 3.3 + - - -
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Residues in contact with PHE 257 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174A MET* 2.9 48.2 - - + -
175A ASN* 3.1 31.9 - - + -
178A VAL* 3.5 19.1 - - + -
179A TYR* 3.4 37.5 - + - -
253A ASN 2.9 19.4 + - - +
254A CYS 3.6 0.9 - - - +
256A THR* 1.3 75.7 - - - +
258A PHE* 1.3 65.2 + + - +
259A CYS 3.0 5.4 - - - -
260A PRO* 2.9 26.4 - - + +
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Residues in contact with PHE 258 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A VAL* 3.8 13.7 - - + -
179A TYR* 3.1 44.0 - + - -
183A PHE* 4.1 19.7 - + - -
254A CYS* 3.0 39.6 + - - +
255A PHE* 3.7 6.2 + - - +
256A THR 3.6 0.2 - - - -
257A PHE* 1.3 82.0 - + - +
259A CYS* 1.3 61.3 + - - +
260A PRO* 3.4 5.7 - - - +
407A STE 4.3 22.9 - - + -
----------------------------------------------------------
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Residues in contact with CYS 259 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
255A PHE* 3.4 14.8 + - + +
256A THR 3.2 9.0 - - - +
257A PHE 3.0 0.2 - - - -
258A PHE* 1.3 81.8 - - - +
260A PRO* 1.3 59.9 - - - +
261A ASP 3.2 2.5 - - - -
262A CYS* 2.6 68.3 + - + +
263A SER 3.9 2.4 - - - +
407A STE 4.5 17.5 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il