Contacts of the helix formed by residues 522 - 567 (chain A) in PDB entry 3WOO
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 522 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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498A THR* 2.8 19.9 + - - -
499A LYS* 2.8 38.2 + - + +
500A LEU* 3.9 5.2 + - - +
505A GLU* 4.8 4.0 - - - +
509A TRP* 5.3 2.0 - - + +
520A SER* 2.8 16.9 + - - +
521A ASN* 1.3 74.9 - - - +
523A PRO* 1.3 65.2 - - - +
524A ALA* 3.0 11.6 + - - +
525A ILE* 3.1 24.9 + - + +
526A GLN* 2.9 27.9 + - - +
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Residues in contact with PRO 523 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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479A TRP* 4.8 3.3 + - - -
494A ARG* 3.2 45.8 - - + +
495A LEU* 3.8 8.9 - - + +
497A GLY* 3.8 8.7 - - - +
498A THR 3.8 19.1 - - - +
521A ASN 3.4 7.0 - - - +
522A ASP* 1.3 90.3 - - - +
524A ALA* 1.3 56.8 + - - +
526A GLN* 3.5 16.1 + - - +
527A TYR* 3.0 25.5 + - - +
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Residues in contact with ALA 524 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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404A MET* 4.2 13.0 - - + +
405A LEU* 4.5 9.1 - - + +
408A ALA* 3.3 15.0 - - + +
495A LEU* 4.2 11.4 - - + +
498A THR* 3.4 27.0 + - + +
500A LEU* 4.1 13.7 - - + -
522A ASP* 3.0 2.5 + - - +
523A PRO* 1.3 78.0 - - - +
525A ILE* 1.3 66.4 + - - +
527A TYR* 3.3 5.7 + - - +
528A ALA 3.0 17.8 + - - -
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Residues in contact with ILE 525 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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408A ALA* 4.3 6.7 - - + -
500A LEU* 4.3 13.5 - - + -
509A TRP* 3.1 55.4 - - + +
517A PHE* 3.3 50.9 - - + +
520A SER* 3.7 12.8 - - - +
522A ASP* 3.1 21.0 + - + +
524A ALA* 1.3 72.9 - - - +
526A GLN* 1.3 60.6 + - - +
528A ALA* 3.1 4.9 + - + +
529A VAL* 2.8 35.2 + - + +
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Residues in contact with GLN 526 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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479A TRP* 5.5 3.4 - - + +
494A ARG* 5.5 4.5 - - - -
520A SER 3.4 23.3 + - - +
521A ASN* 3.8 26.9 + - - +
522A ASP 2.9 15.7 + - - +
523A PRO* 3.6 18.3 - - - +
525A ILE* 1.3 77.8 - - - +
527A TYR* 1.3 56.8 + - - +
529A VAL* 3.3 6.8 + - - +
530A ALA* 2.9 30.5 + - - +
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Residues in contact with TYR 527 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396A LEU* 4.0 2.6 - - - +
399A PHE* 3.5 27.6 - + - -
400A ASN* 2.7 31.5 + - - -
405A LEU* 3.8 30.7 - - + -
409A THR* 4.4 5.6 - - + -
476A VAL* 3.9 11.7 - - + +
479A TRP* 3.8 44.7 - + + +
495A LEU* 4.5 1.1 - - + -
523A PRO 3.0 14.5 + - - +
524A ALA 3.4 9.2 - - - +
526A GLN* 1.3 77.2 - - - +
528A ALA* 1.3 66.4 + - + +
530A ALA* 3.2 6.7 + - + +
531A VAL* 3.0 55.3 + - + +
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Residues in contact with ALA 528 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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408A ALA* 3.7 35.4 - - + +
409A THR* 3.8 22.7 - - + +
412A TYR* 3.9 11.2 - - + -
524A ALA 3.0 11.2 + - - +
525A ILE* 3.1 9.2 + - - +
527A TYR* 1.3 75.6 - - - +
529A VAL* 1.3 63.2 + - - +
531A VAL* 3.7 1.4 - - - +
532A MET* 2.9 29.1 + - - +
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Residues in contact with VAL 529 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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412A TYR* 3.6 39.2 + - + +
517A PHE 4.0 22.4 - - - +
518A GLU* 4.3 15.0 - - + +
525A ILE* 2.8 25.8 + - + +
526A GLN* 3.8 6.7 - - - +
528A ALA* 1.3 76.4 - - - +
530A ALA* 1.3 65.2 + - - +
531A VAL 3.4 0.2 + - - -
532A MET* 4.2 0.5 - - - +
533A PRO* 3.6 16.3 - - - +
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Residues in contact with ALA 530 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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475A ALA* 3.7 20.3 - - + +
479A TRP* 5.4 10.3 - - + -
526A GLN 2.9 17.8 + - - +
527A TYR* 3.2 7.4 + - - +
529A VAL* 1.3 82.0 - - - +
531A VAL* 1.3 62.6 + - + +
533A PRO* 4.2 5.9 - - - +
534A THR* 5.1 0.7 + - - -
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Residues in contact with VAL 531 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396A LEU* 5.8 0.9 - - + -
400A ASN* 4.9 1.1 - - - +
409A THR* 4.3 1.8 - - + -
473A VAL* 6.0 0.4 - - + -
475A ALA* 4.3 14.4 - - + +
476A VAL* 3.7 20.9 - - + +
479A TRP* 6.1 0.2 - - + -
527A TYR* 3.0 62.1 + - + +
528A ALA* 3.7 7.6 - - - +
530A ALA* 1.3 79.6 - - + +
532A MET* 1.3 70.4 + - - +
533A PRO 3.3 2.5 - - - -
534A THR* 2.9 19.7 + - - -
535A LEU* 3.0 33.5 + - + +
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Residues in contact with MET 532 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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409A THR* 3.4 38.6 - - - +
412A TYR* 3.6 33.7 - - + -
413A ARG* 3.9 15.9 - - + +
416A ILE* 4.0 8.1 - - + -
528A ALA 2.9 16.4 + - - +
531A VAL* 1.3 77.2 - - - +
533A PRO* 1.4 71.8 - - + +
535A LEU* 3.1 13.2 + - + -
536A LEU* 2.9 45.0 + - + +
806A GOL 3.9 17.3 - - - +
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Residues in contact with PRO 533 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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412A TYR* 5.6 0.7 - - + -
529A VAL 3.6 13.2 - - - +
530A ALA 4.2 5.6 - - - +
531A VAL 3.7 2.0 - - - -
532A MET* 1.4 92.0 - - + +
534A THR* 1.3 55.9 + - - +
536A LEU* 3.5 11.5 + - + +
537A LYS* 3.1 26.7 + - - +
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Residues in contact with THR 534 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396A LEU* 4.8 6.5 - - + -
473A VAL* 3.5 32.2 - - + +
475A ALA* 3.9 18.5 + - - +
531A VAL* 2.9 13.8 + - + -
533A PRO* 1.3 76.6 - - - +
535A LEU* 1.3 61.3 + - + +
537A LYS* 3.2 19.1 + - - +
538A LEU* 2.9 47.3 + - + +
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Residues in contact with LEU 535 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396A LEU* 4.0 22.2 - - + -
400A ASN* 3.7 25.1 - - - +
409A THR* 4.2 12.3 - - + -
531A VAL* 3.0 33.4 + - + +
532A MET* 3.1 22.6 + - + +
534A THR* 1.3 76.9 - - - +
536A LEU* 1.3 58.7 - - - +
538A LEU* 3.3 8.8 + - + +
539A GLU* 2.9 29.5 + - - +
806A GOL 3.2 39.0 - - - +
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Residues in contact with LEU 536 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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413A ARG* 3.4 47.1 - - - +
416A ILE* 4.8 15.9 - - + -
417A GLU* 5.2 0.4 - - - +
532A MET* 2.9 40.2 + - + +
533A PRO* 3.7 8.5 - - + +
535A LEU* 1.3 77.8 - - - +
537A LYS* 1.3 55.2 + - - +
539A GLU* 3.4 8.7 + - - +
540A GLN* 3.1 31.0 + - - +
806A GOL 4.9 0.2 - - - +
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Residues in contact with LYS 537 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392A ARG* 5.4 5.3 - - - +
533A PRO 3.1 14.3 + - - +
534A THR* 3.2 19.0 + - - +
536A LEU* 1.3 72.4 - - - +
538A LEU* 1.3 88.5 + - - +
540A GLN* 3.2 9.3 + - - +
541A GLU* 3.1 34.1 + - + +
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Residues in contact with LEU 538 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392A ARG* 3.5 30.3 - - - +
393A ASP* 3.8 24.7 - - + +
396A LEU* 4.0 26.7 - - + -
534A THR* 2.9 29.2 + - + +
535A LEU* 3.7 8.1 - - + +
537A LYS* 1.3 97.1 - - - +
539A GLU* 1.3 62.8 + - - +
541A GLU* 3.2 16.0 + - - +
542A ARG* 2.9 38.1 + - + +
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Residues in contact with GLU 539 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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413A ARG* 2.9 39.1 + - - -
426A GLU* 3.7 21.8 - - - +
535A LEU 2.9 16.6 + - - +
536A LEU* 3.6 10.3 - - - +
537A LYS 3.2 0.2 - - - -
538A LEU* 1.3 76.8 - - - +
540A GLN* 1.3 53.9 + - + +
542A ARG* 3.0 27.1 + - + +
543A LYS* 2.7 50.9 + - + +
806A GOL 2.7 21.9 + - - +
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Residues in contact with GLN 540 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149A LEU* 3.6 33.1 - - + +
153A LYS* 3.7 15.9 + - - -
536A LEU 3.1 17.1 + - - +
537A LYS* 3.2 10.7 + - - +
539A GLU* 1.3 75.2 - - + +
541A GLU* 1.3 52.4 + - - +
543A LYS* 3.2 11.6 + - + +
544A THR* 2.8 40.9 + - - -
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Residues in contact with GLU 541 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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389A THR* 5.0 2.7 + - - +
392A ARG* 3.4 23.7 + - - -
393A ASP* 5.3 0.9 - - - +
537A LYS* 3.1 29.4 + - + +
538A LEU* 3.4 27.5 - - - +
540A GLN* 1.3 74.1 - - - +
542A ARG* 1.3 65.2 + - - +
544A THR* 3.3 6.9 + - - -
545A ARG* 3.0 47.6 + - - +
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Residues in contact with ARG 542 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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393A ASP* 5.9 4.4 - - - +
538A LEU* 2.9 36.6 + - + +
539A GLU* 3.0 25.7 + - + +
541A GLU* 1.3 80.1 - - - +
543A LYS* 1.3 57.3 + - + +
545A ARG* 3.4 25.4 + - - +
546A ALA* 2.9 28.8 + - - +
806A GOL 3.1 32.1 + - - -
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Residues in contact with LYS 543 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148A ALA 4.5 0.3 - - - +
149A LEU* 3.7 20.2 - - + -
152A THR* 2.8 36.2 + - + -
153A LYS* 5.7 7.5 - - + +
156A GLU* 3.2 29.3 + - - +
426A GLU* 2.6 40.7 + - - -
539A GLU* 2.7 41.4 + - + +
540A GLN* 3.6 9.6 - - + +
541A GLU 3.2 0.4 - - - -
542A ARG* 1.3 72.2 - - + +
544A THR* 1.3 59.3 + - - +
546A ALA* 3.2 6.1 + - - +
547A GLY* 2.9 12.6 + - - -
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Residues in contact with THR 544 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148A ALA* 3.5 15.8 - - + +
149A LEU* 4.0 27.2 - - + +
540A GLN* 2.8 22.5 + - - +
541A GLU* 3.6 7.8 - - - -
543A LYS* 1.3 76.4 - - - +
545A ARG* 1.3 64.9 + - + +
547A GLY 3.0 10.4 + - - -
548A GLU* 3.1 23.3 + - + +
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Residues in contact with ARG 545 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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382A LEU* 3.7 35.7 - - + +
385A GLN* 3.7 41.2 + - - +
386A SER* 3.6 23.0 + - - +
389A THR* 5.0 4.2 + - - +
393A ASP* 4.5 13.7 + - - -
541A GLU* 3.0 37.6 + - - +
542A ARG* 3.9 29.0 - - - +
544A THR* 1.3 77.1 - - + +
546A ALA* 1.3 57.6 + - - +
548A GLU* 3.2 9.8 + - - +
549A ASN* 2.9 27.9 + - - +
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Residues in contact with ALA 546 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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152A THR* 3.8 8.7 - - + +
542A ARG 2.9 18.0 + - - +
543A LYS* 3.5 8.7 - - - +
544A THR 3.2 0.2 - - - -
545A ARG* 1.3 77.3 - - - +
547A GLY* 1.3 58.2 + - - +
549A ASN* 3.4 9.5 + - - +
550A LEU* 2.9 31.2 + - + +
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Residues in contact with GLY 547 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148A ALA* 3.4 16.8 - - - -
151A ARG* 2.8 29.1 + - - -
152A THR* 3.1 18.8 + - - -
543A LYS 2.9 9.5 + - - -
544A THR 3.0 2.6 + - - -
546A ALA* 1.3 76.6 - - - +
548A GLU* 1.3 64.8 + - - +
550A LEU* 3.3 11.9 + - - -
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Residues in contact with GLU 548 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148A ALA* 3.6 15.2 - - + +
151A ARG* 4.0 7.2 + - - +
378A LYS* 3.5 32.2 + - - +
382A LEU* 3.5 34.8 - - + +
385A GLN* 4.7 7.3 + - - +
544A THR* 3.1 22.2 + - - +
545A ARG* 3.2 2.6 + - - +
547A GLY* 1.3 77.6 - - - +
549A ASN* 1.3 62.4 + - - +
551A ALA* 3.0 15.9 + - - +
552A ALA* 3.2 13.2 + - - +
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Residues in contact with ASN 549 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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379A LEU* 3.1 27.8 - - - +
382A LEU* 3.6 10.1 - - + +
545A ARG 2.9 14.4 + - - +
546A ALA* 3.5 13.2 - - - +
548A GLU* 1.3 77.2 - - - +
550A LEU* 1.4 58.7 + - - +
552A ALA 4.5 0.7 - - - +
553A ARG* 2.8 74.8 + - - +
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Residues in contact with LEU 550 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A ILE* 4.7 13.2 - - + +
151A ARG* 3.9 40.6 - - + +
152A THR* 4.2 8.7 - - + +
155A LEU* 3.7 34.5 - - + -
181A GLY 5.9 0.9 - - - +
182A GLY* 5.9 2.7 - - - -
185A TYR* 4.0 13.5 - - - +
546A ALA* 2.9 21.3 + - + +
547A GLY* 3.6 7.4 - - - +
548A GLU 3.2 0.8 - - - -
549A ASN* 1.4 75.1 - - - +
551A ALA* 1.3 62.3 + - - +
554A PRO* 3.1 23.1 - - + +
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Residues in contact with ALA 551 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A ILE* 6.3 0.4 - - - -
151A ARG* 3.8 27.8 - - - +
378A LYS* 6.3 1.6 - - + -
547A GLY 3.5 1.6 + - - -
548A GLU* 3.0 10.1 + - - +
550A LEU* 1.3 82.4 - - - +
552A ALA* 1.3 61.5 + - - +
554A PRO* 3.9 5.5 - - - +
555A VAL* 4.2 14.2 - - - +
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Residues in contact with ALA 552 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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375A ALA* 3.5 21.7 - - - +
378A LYS* 3.9 25.6 - - + -
379A LEU* 3.7 26.5 - - + -
548A GLU 3.2 7.3 + - - +
551A ALA* 1.3 79.5 - - + +
553A ARG* 1.3 66.6 + - - +
555A VAL* 3.2 11.8 + - - +
556A TYR* 3.2 12.1 + - - +
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Residues in contact with ARG 553 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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181A GLY* 3.6 22.4 - - - +
279A TYR 5.0 2.4 + - - -
280A ALA* 4.8 3.6 - - - +
281A LEU* 4.1 10.3 - - - +
284A GLU* 2.5 45.0 + - - -
379A LEU* 3.9 20.3 + - - +
549A ASN* 2.8 62.7 + - - +
550A LEU* 5.3 0.2 - - - -
552A ALA* 1.3 73.3 - - - +
554A PRO* 1.3 67.6 - - + +
555A VAL 3.1 0.2 + - - -
556A TYR* 3.4 0.3 + - - -
557A LEU* 2.9 56.8 + - + +
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Residues in contact with PRO 554 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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138A LYS* 6.2 1.1 - - - -
181A GLY 3.0 22.9 - - - +
182A GLY* 4.0 13.0 - - - +
183A ASN* 3.0 42.7 + - - +
549A ASN 3.8 0.2 - - - +
550A LEU* 3.1 29.6 - - + +
551A ALA 3.9 4.0 - - - +
552A ALA 3.7 2.5 - - - -
553A ARG* 1.3 86.7 - - + +
555A VAL* 1.3 63.3 + - + +
558A GLN* 3.0 13.5 + - - +
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Residues in contact with VAL 555 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371A PRO* 3.7 33.0 - - + +
372A ALA* 3.7 14.7 - - + +
375A ALA* 4.1 4.3 - - + -
551A ALA 4.2 12.6 - - - +
552A ALA* 3.2 7.8 + - - +
554A PRO* 1.3 79.9 - - + +
556A TYR* 1.3 64.5 + - - +
558A GLN* 3.8 4.7 - - - +
559A ALA* 3.3 18.9 + - - +
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Residues in contact with TYR 556 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280A ALA 5.5 0.4 - - - -
281A LEU* 3.6 33.4 - - + -
355A GLU* 4.0 17.1 + - - +
358A VAL* 4.0 9.1 - - + +
359A LEU* 4.2 3.6 - - + +
362A LEU* 4.4 15.0 - - + -
372A ALA* 3.7 21.5 - - + -
375A ALA* 4.0 7.1 - - + +
376A HIS* 3.5 32.4 - + + -
379A LEU* 3.7 24.2 - - + -
552A ALA 3.2 5.8 + - - +
553A ARG 4.1 0.4 - - - +
555A VAL* 1.3 81.1 - - - +
557A LEU* 1.3 65.7 + - + +
559A ALA* 3.0 7.9 + - + +
560A LEU* 2.9 59.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 557 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180A SER* 3.9 18.8 - - - +
181A GLY* 3.6 28.5 - - - +
183A ASN* 4.5 0.7 - - - -
279A TYR* 4.0 37.8 - - + +
280A ALA* 6.0 0.2 - - - -
281A LEU* 5.7 0.2 - - + -
553A ARG* 2.9 48.3 + - - +
554A PRO 4.3 0.4 - - - +
556A TYR* 1.3 87.4 - - + +
558A GLN* 1.3 57.6 + - - +
560A LEU* 3.3 18.3 + - + +
561A ALA* 2.9 27.7 + - - +
574A ASP* 5.4 1.6 - - - +
----------------------------------------------------------
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Residues in contact with GLN 558 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180A SER* 5.9 0.7 - - - -
183A ASN* 3.5 28.2 + - - +
554A PRO 3.0 19.7 + - - +
555A VAL* 3.8 4.7 - - - +
557A LEU* 1.3 77.6 - - - +
559A ALA* 1.3 55.9 + - - +
561A ALA* 3.3 12.5 + - - +
562A ASP* 2.9 65.9 + - - +
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Residues in contact with ALA 559 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A VAL* 5.1 2.2 - - + -
361A TRP* 3.6 7.9 - - + -
362A LEU* 4.2 18.6 - - + -
372A ALA* 3.7 29.4 - - + -
555A VAL 3.3 5.0 + - - +
556A TYR* 3.0 13.5 + - + +
558A GLN* 1.3 80.0 - - - +
560A LEU* 1.3 52.2 + - - +
562A ASP* 3.3 6.9 + - - +
563A TYR* 2.8 35.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 560 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279A TYR* 3.8 26.2 - - + -
280A ALA 4.3 19.7 - - - +
354A GLU* 6.3 0.9 - - + -
355A GLU* 6.3 0.4 - - - -
358A VAL* 3.8 23.1 - - + -
556A TYR* 2.9 56.8 + - + +
557A LEU* 3.4 20.0 - - + +
559A ALA* 1.3 73.1 - - - +
561A ALA* 1.3 63.7 + - - +
563A TYR* 3.2 6.0 + - - +
564A LYS* 2.9 31.8 + - - +
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Residues in contact with ALA 561 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180A SER* 6.4 2.2 - - - -
279A TYR* 3.8 18.5 - - + -
557A LEU 2.9 16.7 + - - +
558A GLN* 3.5 22.0 - - - +
560A LEU* 1.3 73.1 - - - +
562A ASP* 1.3 59.0 + - - +
564A LYS* 3.6 2.9 + - - +
565A LYS* 3.0 28.9 + - - +
571A VAL* 3.8 21.7 - - + +
----------------------------------------------------------
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Residues in contact with ASP 562 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361A TRP* 4.0 16.0 - - + -
558A GLN* 2.9 50.2 + - - +
559A ALA* 3.6 6.9 - - - +
561A ALA* 1.3 76.4 - - - +
563A TYR* 1.3 63.3 + - - +
565A LYS* 3.3 13.0 + - - +
566A SER* 3.0 21.8 + - - -
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Residues in contact with TYR 563 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354A GLU* 3.5 30.0 + - - -
357A ALA* 3.5 33.1 - - + +
358A VAL* 3.3 27.4 - - + -
361A TRP* 3.7 41.5 - + + -
559A ALA 2.8 17.8 + - - +
560A LEU* 3.2 4.5 + - - +
562A ASP* 1.3 73.8 - - - +
564A LYS* 1.3 68.9 + - + +
566A SER* 2.7 26.7 + - - -
567A GLN* 3.0 45.9 + - + +
569A GLU* 5.4 1.3 - - - -
----------------------------------------------------------
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Residues in contact with LYS 564 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26A GLU* 5.4 4.9 + - - -
278A ARG* 4.5 18.6 + - - +
279A TYR* 3.4 45.7 - - + +
354A GLU* 4.6 13.4 + - - +
560A LEU* 2.9 18.7 + - - +
561A ALA 3.7 4.3 - - - +
563A TYR* 1.3 78.3 - - + +
565A LYS* 1.3 62.5 + - - +
567A GLN* 3.0 9.3 + - - +
569A GLU* 3.0 51.7 + - + +
570A PHE 4.3 11.5 + - - +
571A VAL* 4.0 9.6 - - + -
572A TYR* 5.9 0.8 + - - -
----------------------------------------------------------
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Residues in contact with LYS 565 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561A ALA 3.0 18.6 + - - +
562A ASP* 3.7 10.3 - - - +
563A TYR 3.2 0.2 - - - -
564A LYS* 1.3 76.7 - - - +
566A SER* 1.3 58.4 + - - +
568A GLY* 3.0 19.2 + - - +
569A GLU 4.5 3.8 - - - -
571A VAL* 4.0 16.3 - - + +
----------------------------------------------------------
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Residues in contact with SER 566 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361A TRP* 4.3 16.1 + - - -
562A ASP 3.0 12.6 + - - -
563A TYR* 2.7 30.4 + - - -
565A LYS* 1.3 77.6 - - - +
567A GLN* 1.3 70.5 + - - +
568A GLY 3.3 1.0 + - - -
----------------------------------------------------------
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Residues in contact with GLN 567 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563A TYR* 3.0 53.4 + - + +
564A LYS 3.0 8.2 + - - +
566A SER* 1.3 91.5 + - - +
568A GLY* 1.3 59.6 + - - +
569A GLU* 3.5 24.1 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il