Contacts of the strand formed by residues 175 - 199 (chain B) in PDB entry 3ZJX
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 175 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91B THR* 5.3 0.4 - - - -
92B ASN* 2.9 28.0 + - - +
93B ASP* 5.3 1.1 + - - -
171B VAL* 3.3 18.0 - - + +
172B PRO* 3.5 23.0 + - + +
173B ALA 3.0 14.6 + - - -
174B ASN* 1.3 76.0 + - - +
176B THR* 1.3 77.6 + - - +
177B VAL* 4.4 3.8 - - + -
258B ASN* 3.6 33.0 + - - +
260B ASN* 3.1 14.6 + - - +
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Residues in contact with THR 176 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89B LEU* 4.1 15.9 - - + -
90B LEU 3.4 5.2 - - - +
91B THR* 2.8 37.1 + - - +
93B ASP* 5.0 1.0 + - - -
175B THR* 1.3 77.4 - - - +
177B VAL* 1.3 69.2 + - - +
259B LEU* 3.1 53.5 + - + +
260B ASN* 5.2 2.2 + - - -
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Residues in contact with VAL 177 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89B LEU* 3.3 6.9 - - - +
90B LEU* 2.9 55.6 + - + +
169B ILE* 4.5 8.3 - - + -
171B VAL* 4.1 21.3 - - + -
175B THR* 4.0 3.8 - - + -
176B THR* 1.3 80.5 - - - +
178B GLU* 1.3 60.3 + - - +
179B VAL* 4.1 15.7 - - + -
256B VAL* 4.5 4.5 - - + -
257B ARG 3.2 14.4 - - - +
258B ASN* 4.3 8.5 - - + -
259B LEU* 4.4 0.4 - - - -
292B ALA* 3.7 29.2 - - + -
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Residues in contact with GLU 178 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B LYS* 3.2 43.9 + - + +
88B ALA 3.4 9.0 - - - +
89B LEU* 3.7 16.8 - - + +
177B VAL* 1.3 74.0 - - - +
179B VAL* 1.3 65.4 + - - +
180B ILE* 4.3 11.2 + - + +
255B LYS 3.7 1.4 - - - +
256B VAL* 3.6 0.9 - - - -
257B ARG* 2.9 68.2 + - + +
259B LEU* 4.0 15.8 - - + +
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Residues in contact with VAL 179 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B LYS* 3.3 4.5 - - - +
88B ALA* 2.7 45.0 + - + +
90B LEU* 4.5 7.0 - - + -
169B ILE* 3.6 25.8 - - + -
177B VAL* 4.1 15.5 - - + +
178B GLU* 1.3 77.5 - - - +
180B ILE* 1.3 62.4 + - - +
254B VAL* 3.4 33.2 - - + -
255B LYS 3.4 3.4 - - - +
256B VAL* 4.3 7.4 - - + -
1296B BOG 3.5 30.3 - - + +
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Residues in contact with ILE 180 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84B TYR* 3.9 19.3 - - + -
86B GLY 3.4 9.6 - - - +
87B LYS* 4.1 19.3 - - + -
178B GLU* 4.3 15.9 - - + +
179B VAL* 1.3 79.7 - - - +
181B ALA* 1.3 71.5 + - - +
182B TYR* 4.2 12.6 + - + -
253B ILE 3.8 0.3 - - - +
254B VAL* 3.2 4.4 - - - -
255B LYS* 2.9 43.2 + - + +
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Residues in contact with ALA 181 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84B TYR* 4.2 0.5 - - - -
85B VAL* 3.0 32.3 + - + -
86B GLY 2.9 13.3 + - - +
105B PHE* 4.1 17.9 - - + -
180B ILE* 1.3 77.1 - - - +
182B TYR* 1.3 63.0 + - - +
252B LEU* 4.9 4.3 - - + -
253B ILE 3.2 8.3 - - - +
254B VAL* 4.1 5.2 - - + -
1296B BOG 3.7 26.8 - - + +
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Residues in contact with TYR 182 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B ASP* 3.1 42.9 + - + -
83B VAL 3.1 17.9 - - - +
84B TYR* 4.2 4.9 - - + -
85B VAL* 4.1 3.4 - - - -
180B ILE* 4.5 15.5 - - + -
181B ALA* 1.3 76.5 - - - +
183B LEU* 1.3 62.6 + - - +
184B LYS* 4.2 5.8 + - + -
252B LEU* 3.7 6.5 - - - +
253B ILE* 2.8 75.1 + - + +
255B LYS* 3.5 40.6 + - + -
266B GLU* 4.1 3.3 + - - -
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Residues in contact with LEU 183 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B ASP* 3.5 3.5 - - - -
83B VAL* 2.8 47.4 + - + +
85B VAL* 4.2 8.7 - - + +
107B CYS* 5.1 12.1 - - - -
108B LYS 5.4 1.1 - - - +
109B ASN* 3.8 37.9 - - + +
182B TYR* 1.3 74.3 - - - +
184B LYS* 1.3 70.5 + - - +
185B LYS* 4.9 2.7 - - + -
249B GLY* 4.5 5.6 - - - -
250B ASP 4.1 11.4 - - - +
251B GLU 3.7 16.2 - - - +
252B LEU* 4.0 21.3 - - + +
285B TYR* 4.6 7.2 - - - +
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Residues in contact with LYS 184 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79B TYR* 3.6 40.8 - - + +
80B LEU 5.4 0.2 + - - -
82B ASP* 2.9 38.4 + - - +
182B TYR* 4.1 7.7 + - + -
183B LEU* 1.3 77.7 - - - +
185B LYS* 1.3 64.6 + - - +
250B ASP* 2.8 31.0 + - + +
251B GLU* 2.9 31.6 + - + +
253B ILE* 3.5 33.4 - - + -
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Residues in contact with LYS 185 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79B TYR* 3.4 7.5 - - - -
80B LEU* 2.7 53.4 + - + +
81B GLU 4.2 14.8 + - - +
82B ASP* 4.7 0.2 + - - -
83B VAL* 3.7 28.9 - - + -
109B ASN* 3.7 17.9 - - - +
183B LEU* 3.9 3.7 + - + +
184B LYS* 1.3 81.6 - - - +
186B VAL* 1.3 59.3 + - - +
247B VAL* 3.9 23.1 - - + -
248B MET 3.3 10.8 - - - +
249B GLY* 4.1 7.6 - - - -
250B ASP 4.4 0.4 - - - +
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Residues in contact with VAL 186 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77B MET* 3.6 31.9 - - + -
78B ASN 3.5 15.7 - - - +
79B TYR* 3.9 25.1 - - + +
80B LEU* 4.3 3.1 - - - -
185B LYS* 1.3 77.5 - - - +
187B ASN* 1.3 71.5 - - - +
188B VAL* 4.1 4.0 - - + -
246B ALA 3.6 0.9 - - - +
247B VAL* 3.4 4.5 - - - +
248B MET* 2.9 41.6 + - + +
250B ASP* 3.9 22.7 - - + +
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Residues in contact with ASN 187 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76B SER 3.5 1.6 - - - +
77B MET* 3.3 6.4 - - - -
78B ASN* 2.7 41.8 + - + +
80B LEU* 3.8 29.1 - - + +
186B VAL* 1.3 73.1 - - - +
188B VAL* 1.3 62.7 + - - +
189B LYS* 3.4 35.8 - - - +
245B SER* 3.2 19.0 + - - -
246B ALA 2.9 17.2 - - - +
247B VAL* 4.4 3.8 - - - +
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Residues in contact with VAL 188 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B PRO* 3.7 26.5 - - + -
76B SER 3.5 2.0 - - - -
77B MET* 3.9 31.4 - - + -
133B VAL* 5.5 1.3 - - + -
134B PRO* 3.9 19.1 - - + +
135B PHE* 4.3 11.0 - - + +
186B VAL* 4.1 5.6 - - + -
187B ASN* 1.3 74.0 - - - +
189B LYS* 1.3 61.3 + - - +
244B TYR* 3.8 15.0 - - + -
245B SER* 3.3 1.9 - - - -
246B ALA* 2.8 44.5 + - + +
248B MET* 4.5 15.3 - - + -
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Residues in contact with LYS 189 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B PRO* 3.4 3.1 - - - +
76B SER* 2.8 54.1 + - - +
78B ASN* 4.5 12.5 - - - +
187B ASN* 3.4 32.3 - - - +
188B VAL* 1.3 71.7 - - - +
190B GLY* 1.3 57.7 + - - +
244B TYR* 3.4 11.7 - - - +
245B SER* 3.8 21.8 - - - +
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Residues in contact with GLY 190 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74B GLU 5.1 3.1 - - - -
75B PRO* 4.7 3.8 - - - -
76B SER 5.0 0.2 - - - -
189B LYS* 1.3 77.0 - - - +
191B ASN* 1.3 65.4 + - - -
243B ASN* 3.2 6.1 - - - +
244B TYR* 3.0 48.4 + - - +
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Residues in contact with ASN 191 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B LEU* 3.9 2.4 - - - +
72B ASP* 2.9 47.4 + - + +
73B GLY 4.6 2.7 + - - +
190B GLY* 1.3 75.0 - - - -
192B VAL* 1.3 69.8 + - - +
242B GLY 3.4 6.0 - - - +
243B ASN* 3.4 22.0 + - - +
244B TYR* 3.8 4.7 + - - -
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Residues in contact with VAL 192 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B VAL* 3.6 24.7 - - + -
70B GLU 3.1 13.9 - - - +
71B LEU* 4.6 1.3 - - - -
72B ASP* 3.8 7.2 - - - +
131B PHE* 3.9 11.4 - - + -
146B TYR* 3.6 26.7 - - + +
191B ASN* 1.3 80.4 - - - +
193B LYS* 1.3 60.8 + - - +
194B LEU* 4.0 6.5 - - + -
241B LYS* 3.5 7.1 - - - +
242B GLY* 2.9 43.1 + - - +
244B TYR* 3.7 24.5 - - + -
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Residues in contact with LYS 193 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68B LYS 3.8 0.7 - - - +
69B VAL* 3.6 2.6 - - - -
70B GLU* 2.7 64.9 + - + +
71B LEU 4.7 4.9 - - - +
72B ASP* 4.0 13.6 - - + +
192B VAL* 1.3 75.4 - - - +
194B LEU* 1.3 62.1 + - - +
195B VAL* 3.9 12.7 + - + -
239B ASN* 5.5 3.6 - - + +
240B GLY 3.3 10.3 - - - +
241B LYS* 4.5 2.2 - - + +
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Residues in contact with LEU 194 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68B LYS 3.7 3.4 - - - -
69B VAL* 4.0 19.3 - - + -
117B THR* 3.8 27.4 - - + +
119B HIS 4.9 0.4 - - - +
146B TYR* 3.6 30.3 - - + -
147B SER 3.9 11.2 - - - +
148B PHE* 3.7 31.7 - - + +
192B VAL* 4.0 5.6 - - + -
193B LYS* 1.3 76.9 - - - +
195B VAL* 1.3 58.5 + - - +
238B ILE 4.3 0.3 - - - -
239B ASN* 3.1 6.6 - - - -
240B GLY* 2.7 46.4 + - - +
241B LYS 4.0 20.0 - - - +
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Residues in contact with VAL 195 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B ASN 3.8 0.8 - - - +
67B PRO* 3.3 3.8 - - - +
68B LYS* 2.9 54.6 + - + +
70B GLU* 3.7 32.3 - - + +
148B PHE* 3.5 7.2 - - - -
193B LYS* 4.0 13.9 - - + +
194B LEU* 1.3 79.7 - - - +
196B GLY* 1.3 59.4 + - - +
197B GLN* 5.5 4.7 - - - +
238B ILE 3.4 10.5 - - - +
239B ASN* 4.4 9.9 - - + -
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Residues in contact with GLY 196 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B ILE* 4.2 11.9 - - - -
65B ASN 3.6 11.2 - - - -
66B ASN 4.0 3.4 - - - -
195B VAL* 1.3 77.4 - - - +
197B GLN* 1.3 74.5 + - - +
237B ASN* 3.6 4.0 - - - +
238B ILE* 2.9 35.8 + - - +
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Residues in contact with GLN 197 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B ILE* 4.5 0.4 - - - -
65B ASN* 2.7 60.5 + - + +
66B ASN* 3.7 22.7 + - - +
68B LYS* 6.2 1.8 - - - +
195B VAL* 5.1 4.6 - - - +
196B GLY* 1.3 92.7 + - - +
198B VAL* 1.3 58.8 + - - +
231B ASN* 3.7 12.8 - - - +
233B ASP* 5.4 2.2 - - - +
235B THR* 3.4 20.2 - - + +
236B ILE 3.2 4.3 - - - -
237B ASN* 3.7 21.6 + - - +
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Residues in contact with VAL 198 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20B VAL* 4.1 6.3 - - + -
63B TYR 3.2 11.0 - - - +
64B ILE* 4.1 7.6 - - + -
125B ILE* 3.6 16.4 - - + -
197B GLN* 1.3 71.0 - - - +
199B SER* 1.3 67.3 + - - +
221B LEU* 3.4 35.4 - - + +
222B SER* 6.0 0.3 + - - -
235B THR* 3.4 6.1 - - - -
236B ILE* 2.7 38.1 + - + +
238B ILE* 3.3 48.2 - - + -
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Residues in contact with SER 199 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61B ASP 5.0 0.3 + - - -
62B PHE* 3.4 5.1 - - - -
63B TYR* 3.0 37.0 + - - +
65B ASN* 3.2 21.7 + - - -
197B GLN 3.7 0.8 + - - -
198B VAL* 1.3 80.7 - - - +
200B GLY* 1.3 63.5 + - - +
221B LEU* 5.4 2.5 - - - -
234B GLY 5.8 1.1 - - - -
235B THR* 4.1 12.8 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il