Contacts of the helix formed by residues 70 - 130 (chain D) in PDB entry 4AD7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 70 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48D ASP* 3.4 26.2 - - + +
50D PRO* 5.1 5.9 - - - +
54D ILE* 5.6 2.0 - - - -
58D HIS* 3.6 12.4 - - - -
68D CYS 4.1 0.6 + - - -
69D CYS* 1.3 76.1 - - - +
71D SER* 1.3 71.1 + - - +
72D GLU* 3.7 12.8 + - + +
73D MET* 3.2 26.0 + - + +
74D GLU* 2.9 27.1 + - - +
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Residues in contact with SER 71 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58D HIS* 3.6 27.4 - - - -
60D ARG* 6.1 4.5 - - - -
70D THR* 1.3 84.2 + - - +
72D GLU* 1.3 60.5 + - - +
74D GLU* 3.2 12.1 + - - +
75D GLU* 2.9 42.4 + - - +
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Residues in contact with GLU 72 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48D ASP* 4.1 21.7 - - - +
70D THR* 3.7 12.9 - - + +
71D SER* 1.3 85.6 + - - +
73D MET* 1.3 57.0 + - - +
75D GLU* 3.2 29.7 + - - +
76D ASN* 2.9 43.4 + - - +
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Residues in contact with MET 73 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35D VAL* 4.0 19.3 - - + -
39D TYR* 3.5 52.9 - - + +
48D ASP* 3.6 8.3 - - + +
49D VAL* 3.6 35.9 - - + -
50D PRO* 4.5 0.2 - - - -
68D CYS 3.7 21.3 - - - +
69D CYS* 4.0 12.1 - - + -
70D THR* 3.2 24.9 + - + +
72D GLU* 1.3 78.1 - - - +
74D GLU* 1.3 57.7 + - - +
76D ASN* 3.9 0.4 - - - +
77D LEU* 2.9 37.6 + - + +
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Residues in contact with GLU 74 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58D HIS 4.5 0.3 - - - +
59D LEU* 3.7 17.9 - - + +
60D ARG* 3.0 30.5 + - - +
61D ILE* 2.6 39.6 + - + -
62D CYS* 2.7 31.9 + - - +
69D CYS* 4.7 5.5 - - + +
70D THR 2.9 14.1 + - - +
71D SER* 3.4 13.7 - - - +
72D GLU 3.2 0.2 - - - -
73D MET* 1.3 75.3 - - - +
75D GLU* 1.3 65.8 + - + +
77D LEU* 3.9 5.3 - - - +
78D ALA* 2.9 25.7 + - - +
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Residues in contact with GLU 75 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60D ARG* 4.1 28.3 + - - +
71D SER* 2.9 27.2 + - - +
72D GLU* 3.3 30.2 - - - +
74D GLU* 1.3 75.7 - - + +
76D ASN* 1.3 60.9 + - - +
78D ALA* 3.2 8.4 + - - +
79D ASN* 2.9 29.2 + - - +
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Residues in contact with ASN 76 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39D TYR* 3.2 22.5 + - + +
44D PHE* 3.3 44.6 - - + -
48D ASP* 4.5 7.9 + - - -
72D GLU* 2.9 25.9 + - - +
73D MET 3.9 3.8 - - - +
75D GLU* 1.3 83.0 - - - +
77D LEU* 1.3 57.4 + - - +
79D ASN* 3.4 7.8 + - - +
80D ARG* 2.9 27.2 + - - +
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Residues in contact with LEU 77 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35D VAL* 5.7 3.6 - - + -
38D ILE 6.3 0.2 - - - -
39D TYR* 4.4 24.5 - - + -
42D LYS* 4.3 26.0 - - + -
44D PHE* 5.4 1.1 - - + -
69D CYS* 4.3 23.3 - - - -
73D MET* 2.9 23.4 + - + +
74D GLU* 4.0 4.3 - - - +
76D ASN* 1.3 73.8 - - - +
78D ALA* 1.3 60.8 + - - +
80D ARG* 3.4 7.2 - - + +
81D SER* 2.9 30.8 + - - -
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Residues in contact with ALA 78 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60D ARG* 5.9 0.4 - - - +
61D ILE* 3.7 24.2 - - + -
74D GLU 2.9 19.2 + - - +
75D GLU* 3.4 6.5 - - - +
77D LEU* 1.3 76.6 - - - +
79D ASN* 1.3 62.5 + - - +
81D SER* 2.8 22.3 + - - -
82D HIS* 3.0 12.7 + - - +
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Residues in contact with ASN 79 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44D PHE* 6.1 2.6 - - - -
75D GLU 2.9 17.1 + - - +
76D ASN* 3.7 7.6 - - - +
78D ALA* 1.3 75.1 - - - +
80D ARG* 1.3 59.6 + - - +
82D HIS* 3.4 13.5 + - - +
83D ALA* 2.9 32.3 + - - +
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Residues in contact with ARG 80 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42D LYS* 2.9 50.0 + - + +
44D PHE* 3.9 22.0 - - + -
76D ASN 2.9 14.5 + - - +
77D LEU* 3.4 15.5 - - + +
78D ALA 3.2 0.2 - - - -
79D ASN* 1.3 76.9 - - - +
81D SER* 1.3 64.4 + - - +
83D ALA* 3.0 11.3 + - - +
84D GLU* 2.9 53.2 + - - +
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Residues in contact with SER 81 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77D LEU 2.9 15.1 + - - -
78D ALA* 2.8 23.9 + - - -
80D ARG* 1.3 72.7 - - - +
82D HIS* 1.3 61.7 + - - +
84D GLU* 3.2 16.3 + - - +
85D LEU* 2.9 24.1 + - - +
----------------------------------------------------------
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Residues in contact with HIS 82 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78D ALA 3.0 18.1 + - - +
79D ASN* 3.5 13.4 + - - +
81D SER* 1.3 77.1 + - - +
83D ALA* 1.3 58.3 + - - +
85D LEU* 3.3 13.4 + - + +
86D GLU* 2.9 59.5 + - + +
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Residues in contact with ALA 83 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79D ASN* 2.9 23.9 + - - +
80D ARG* 3.4 13.0 - - - +
82D HIS* 1.3 80.0 + - - +
84D GLU* 1.3 58.5 + - + +
86D GLU* 3.4 10.1 + - - +
87D THR* 2.9 33.2 + - - +
90D ARG* 5.1 0.3 + - - -
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Residues in contact with GLU 84 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42D LYS* 4.0 15.9 - - - +
80D ARG* 2.9 44.8 + - - +
81D SER* 3.2 16.6 + - - +
83D ALA* 1.3 74.1 - - - +
85D LEU* 1.3 60.1 + - - +
87D THR* 3.2 8.6 + - - -
88D ALA* 3.0 27.7 + - - +
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Residues in contact with LEU 85 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81D SER 2.9 14.2 + - - +
82D HIS* 3.6 15.3 - - + +
84D GLU* 1.3 76.1 - - - +
86D GLU* 1.3 62.8 + - - +
88D ALA* 3.1 12.6 + - + +
89D LEU* 3.0 41.8 + - + +
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Residues in contact with GLU 86 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82D HIS* 2.9 46.9 + - + +
83D ALA* 3.6 9.5 - - - +
85D LEU* 1.3 76.4 - - - +
87D THR* 1.3 57.4 + - - +
89D LEU* 3.4 13.3 + - + +
90D ARG* 2.9 48.7 + - - +
----------------------------------------------------------
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Residues in contact with THR 87 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83D ALA* 2.9 21.6 + - - +
84D GLU* 3.4 11.8 - - - +
86D GLU* 1.3 73.4 - - - +
88D ALA* 1.3 60.5 + - - +
90D ARG* 3.3 23.1 + - - +
91D ASP* 2.9 50.4 + - - +
94D ARG* 5.6 0.2 - - - +
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Residues in contact with ALA 88 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84D GLU 3.0 12.4 + - - +
85D LEU* 3.4 16.4 - - + +
87D THR* 1.3 77.7 - - - +
89D LEU* 1.3 63.9 + - + +
91D ASP* 3.2 8.7 + - - +
92D SER* 3.0 24.0 + - - -
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Residues in contact with LEU 89 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85D LEU* 3.0 33.6 + - + +
86D GLU* 3.7 15.7 - - + +
88D ALA* 1.3 76.7 - - + +
90D ARG* 1.3 64.2 + - - +
92D SER* 3.7 7.4 - - - -
93D SER* 2.9 28.1 + - - -
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Residues in contact with ARG 90 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83D ALA 5.5 0.2 + - - -
86D GLU* 2.9 40.5 + - - +
87D THR* 3.3 41.1 + - - +
89D LEU* 1.3 75.9 - - - +
91D ASP* 1.3 56.0 + - - +
93D SER* 3.8 4.5 - - - -
94D ARG* 2.9 58.9 + - + +
----------------------------------------------------------
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Residues in contact with ASP 91 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87D THR* 2.9 30.0 + - - +
88D ALA* 3.5 9.2 - - - +
90D ARG* 1.3 76.7 - - - +
92D SER* 1.3 64.1 + - - +
94D ARG* 2.4 45.8 + - - +
95D VAL* 2.9 28.6 + - + +
----------------------------------------------------------
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Residues in contact with SER 92 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88D ALA 3.0 16.1 + - - -
89D LEU* 3.7 8.3 - - - -
91D ASP* 1.3 75.0 - - - +
93D SER* 1.3 63.4 + - - +
95D VAL* 3.1 11.0 + - - +
96D LEU* 3.0 21.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 93 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89D LEU 2.9 18.0 + - - -
90D ARG* 3.9 5.2 - - - -
92D SER* 1.3 75.9 - - - +
94D ARG* 1.3 56.5 + - - +
96D LEU* 3.3 10.5 + - - +
97D GLN* 2.9 46.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 94 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87D THR* 5.6 0.2 - - - +
90D ARG* 2.9 41.2 + - + +
91D ASP* 2.4 46.5 + - - +
93D SER* 1.3 73.9 - - - +
95D VAL* 1.3 67.0 + - + +
97D GLN* 3.3 15.3 + - + +
98D ALA* 2.9 24.4 + - - +
----------------------------------------------------------
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Residues in contact with VAL 95 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91D ASP* 2.9 20.2 + - + +
92D SER* 3.1 9.8 + - - +
94D ARG* 1.3 77.3 - - + +
96D LEU* 1.3 63.5 + - - +
98D ALA* 3.1 8.9 + - + +
99D MET* 3.0 23.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 96 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92D SER 3.0 11.7 + - - +
93D SER* 3.5 12.6 - - - +
95D VAL* 1.3 78.4 - - - +
97D GLN* 1.3 64.2 + - + +
99D MET* 3.2 27.6 + - + +
100D LEU* 3.0 37.6 + - + +
----------------------------------------------------------
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Residues in contact with GLN 97 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93D SER* 2.9 39.9 + - - +
94D ARG* 3.6 14.1 - - + +
96D LEU* 1.3 75.2 - - + +
98D ALA* 1.3 59.0 + - - +
100D LEU* 3.9 8.5 - - + +
101D ALA* 2.9 32.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 98 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94D ARG 2.9 13.3 + - - +
95D VAL* 3.4 12.6 - - + +
97D GLN* 1.3 76.7 - - - +
99D MET* 1.3 62.6 + - - +
101D ALA* 3.4 5.3 + - - +
102D THR* 3.0 28.7 + - - +
----------------------------------------------------------
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Residues in contact with MET 99 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95D VAL* 3.0 13.4 + - + +
96D LEU* 3.2 31.4 + - + +
98D ALA* 1.3 76.4 - - - +
100D LEU* 1.3 81.5 + - + +
102D THR* 3.1 8.8 + - - -
103D GLN* 3.0 49.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 100 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96D LEU* 3.0 36.9 + - + +
97D GLN* 4.0 6.7 - - + +
99D MET* 1.3 98.1 - - + +
101D ALA* 1.3 58.9 + - - +
103D GLN* 3.4 7.3 + - + +
104D LEU* 2.9 29.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 101 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97D GLN 2.9 19.7 + - - +
98D ALA* 3.6 6.3 - - - +
100D LEU* 1.3 76.1 - - - +
102D THR* 1.3 63.2 + - - +
104D LEU* 3.2 10.5 + - - +
105D ARG* 2.9 26.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 102 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98D ALA 3.0 16.2 + - - -
99D MET* 3.1 11.1 + - - -
101D ALA* 1.3 77.3 - - - +
103D GLN* 1.3 70.5 + - - +
105D ARG* 3.4 22.6 + - - +
106D SER* 2.9 36.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 103 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99D MET* 3.0 41.3 + - - +
100D LEU* 3.6 10.5 - - + +
102D THR* 1.3 82.4 - - - +
104D LEU* 1.3 64.1 + - - +
106D SER* 3.2 5.8 + - - -
107D PHE* 3.0 53.4 + - + -
----------------------------------------------------------
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Residues in contact with LEU 104 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100D LEU 2.9 14.8 + - - +
101D ALA* 3.2 13.7 + - - +
103D GLN* 1.3 77.3 - - - +
105D ARG* 1.3 64.1 + - - +
107D PHE* 4.0 2.2 - - - +
108D ASP* 3.0 34.2 + - + +
----------------------------------------------------------
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Residues in contact with ARG 105 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101D ALA 2.9 17.4 + - - +
102D THR* 3.8 22.3 + - - +
104D LEU* 1.3 74.6 - - - +
106D SER* 1.3 65.5 + - - +
108D ASP* 4.6 4.0 - - - -
109D ASP* 2.9 49.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 106 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102D THR* 2.9 26.8 + - - +
103D GLN* 3.4 13.1 - - - -
104D LEU 3.2 0.2 - - - -
105D ARG* 1.3 77.8 - - - +
107D PHE* 1.3 70.5 + - - +
109D ASP* 3.8 3.3 - - - +
110D HIS* 2.9 23.3 + - - +
----------------------------------------------------------
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Residues in contact with PHE 107 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103D GLN* 3.0 50.0 + - + +
104D LEU* 4.2 2.2 - - + +
106D SER* 1.3 81.6 - - - +
108D ASP* 1.3 63.0 + - - +
110D HIS* 3.1 11.3 + + + +
111D PHE* 2.9 57.0 + + + -
----------------------------------------------------------
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Residues in contact with ASP 108 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104D LEU* 3.0 26.9 + - + +
105D ARG* 3.9 4.0 - - - +
107D PHE* 1.3 76.1 - - - +
109D ASP* 1.3 67.3 + - - +
111D PHE* 3.2 11.9 + - - +
112D GLN* 3.0 47.5 + - - +
----------------------------------------------------------
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Residues in contact with ASP 109 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105D ARG* 2.9 41.5 + - - +
106D SER* 3.9 3.4 - - - +
108D ASP* 1.3 80.6 - - - +
110D HIS* 1.3 56.9 - - - +
112D GLN* 3.7 17.8 - - - +
113D HIS* 2.9 43.4 + - + +
----------------------------------------------------------
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Residues in contact with HIS 110 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106D SER 2.9 15.3 + - - +
107D PHE* 3.1 15.2 + + + +
109D ASP* 1.3 77.9 - - - +
111D PHE* 1.3 74.1 + + - +
113D HIS* 3.2 10.1 + - - +
114D LEU* 2.9 57.1 + - + +
----------------------------------------------------------
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Residues in contact with PHE 111 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107D PHE* 2.9 50.6 + + + -
108D ASP* 3.7 9.9 - - - +
110D HIS* 1.3 88.9 - + - +
112D GLN* 1.3 67.7 + - + +
114D LEU* 3.0 18.0 + - + +
115D LEU* 3.0 23.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 112 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108D ASP* 3.0 42.4 + - - +
109D ASP* 3.7 18.7 - - - +
111D PHE* 1.3 75.0 - - + +
113D HIS* 1.3 57.4 + - - +
115D LEU* 3.3 5.6 + - - +
116D ASN* 2.9 40.3 + - - +
----------------------------------------------------------
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Residues in contact with HIS 113 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109D ASP* 2.9 32.3 + - + +
110D HIS* 3.3 12.3 - - - +
111D PHE 3.1 0.2 - - - -
112D GLN* 1.3 74.9 - - - +
114D LEU* 1.3 60.9 + - + +
116D ASN* 3.8 4.7 - - - +
117D ASP* 2.9 41.8 + - - +
120D ARG* 4.7 12.5 + - - -
----------------------------------------------------------
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Residues in contact with LEU 114 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110D HIS* 2.9 53.1 + - + +
111D PHE* 3.0 21.3 + - + +
113D HIS* 1.3 79.4 - - + +
115D LEU* 1.3 64.1 + - - +
117D ASP* 3.2 11.3 + - + +
118D SER* 3.0 22.0 + - - -
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Residues in contact with LEU 115 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111D PHE 3.0 11.5 + - - +
112D GLN* 3.8 9.4 - - - +
114D LEU* 1.3 76.8 - - - +
116D ASN* 1.3 62.9 + - - +
118D SER* 3.0 14.5 + - - -
119D GLU* 2.9 27.9 + - + +
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Residues in contact with ASN 116 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112D GLN* 2.9 22.8 + - - +
113D HIS* 4.0 3.1 - - - +
115D LEU* 1.3 80.9 - - - +
117D ASP* 1.3 57.6 + - - +
119D GLU* 3.4 13.2 + - - +
120D ARG* 2.9 56.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 117 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113D HIS* 2.9 28.3 + - - +
114D LEU* 3.3 12.0 - - - +
116D ASN* 1.3 73.6 - - - +
118D SER* 1.3 61.8 + - - +
120D ARG* 2.9 28.8 + - - +
121D THR* 2.8 36.0 + - - +
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Residues in contact with SER 118 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114D LEU 3.0 12.4 + - - -
115D LEU* 3.3 18.6 - - - -
117D ASP* 1.3 76.9 - - - +
119D GLU* 1.3 56.3 + - - +
121D THR* 3.4 7.2 + - - -
122D LEU* 2.9 29.3 + - - +
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Residues in contact with GLU 119 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115D LEU* 2.9 13.4 + - + +
116D ASN* 3.8 14.7 + - - +
117D ASP 3.3 0.2 - - - -
118D SER* 1.3 77.4 - - - +
120D ARG* 1.3 56.9 + - - +
122D LEU* 3.2 12.9 + - + +
123D GLN* 2.9 54.3 + - + +
----------------------------------------------------------
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Residues in contact with ARG 120 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113D HIS* 4.2 12.3 + - - -
116D ASN* 2.9 45.5 + - - +
117D ASP* 2.9 29.9 + - - +
119D GLU* 1.3 73.9 - - + +
121D THR* 1.3 64.8 + - - +
123D GLN* 3.1 15.4 + - - +
124D ALA* 2.9 25.6 + - - +
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Residues in contact with THR 121 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117D ASP* 2.8 24.2 + - - +
118D SER* 3.6 7.1 - - - -
120D ARG* 1.3 76.4 - - - +
122D LEU* 1.3 58.5 + - - +
124D ALA* 3.9 4.9 - - - +
125D THR* 2.9 44.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 122 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118D SER* 2.9 15.3 + - - +
119D GLU* 3.4 16.8 - - + +
120D ARG 3.1 0.2 - - - -
121D THR* 1.3 77.0 - - - +
123D GLN* 1.3 68.7 + - + +
125D THR* 4.7 0.2 - - - -
126D PHE* 2.9 84.4 + - + +
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Residues in contact with GLN 123 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119D GLU* 2.9 41.5 + - + +
120D ARG* 3.1 13.8 + - - +
122D LEU* 1.3 86.5 - - + +
124D ALA* 1.3 57.2 + - - +
127D PRO* 3.3 25.6 - - - +
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Residues in contact with ALA 124 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120D ARG 2.9 15.5 + - - +
121D THR* 4.0 5.6 - - - +
123D GLN* 1.3 76.9 - - - +
125D THR* 1.3 63.6 + - - +
127D PRO* 4.1 4.7 - - - +
128D GLY 5.0 1.9 + - - -
----------------------------------------------------------
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Residues in contact with THR 125 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121D THR* 2.9 28.3 + - - +
122D LEU* 4.1 0.7 - - - -
124D ALA* 1.3 80.3 - - - +
126D PHE* 1.3 88.5 + - + +
127D PRO 3.6 0.2 - - - -
128D GLY* 3.3 5.9 + - - -
129D ALA* 3.3 24.3 + - + +
----------------------------------------------------------
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Residues in contact with PHE 126 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122D LEU* 2.9 64.7 + - + +
123D GLN* 5.5 0.2 - - - -
125D THR* 1.3 86.8 - - + +
127D PRO* 1.3 63.3 - - + +
129D ALA 3.0 0.5 + - - -
130D PHE* 2.6 69.8 + + + +
----------------------------------------------------------
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Residues in contact with PRO 127 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123D GLN* 3.3 25.1 - - - +
124D ALA 4.1 3.6 - - - +
125D THR 3.7 2.5 - - - -
126D PHE* 1.3 91.7 - - + +
128D GLY* 1.3 56.3 + - - +
130D PHE 2.7 18.3 - - - +
131D GLY* 4.8 3.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 128 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124D ALA 5.0 1.4 + - - -
125D THR 3.3 6.7 + - - -
126D PHE 3.1 0.6 - - - -
127D PRO* 1.3 80.7 - - - +
129D ALA* 1.3 63.8 + - - +
130D PHE 3.6 1.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 129 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125D THR* 3.3 18.4 + - + +
126D PHE* 3.0 3.6 + - - +
128D GLY* 1.3 76.9 - - - +
130D PHE* 1.3 92.7 + - + +
----------------------------------------------------------
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Residues in contact with PHE 130 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125D THR* 5.5 0.4 - - + -
126D PHE* 2.6 70.0 + + + +
127D PRO* 2.7 29.7 - - - +
128D GLY 4.7 1.1 - - - -
129D ALA* 1.3 94.4 - - + +
131D GLY* 1.3 65.4 + - - +
133D LEU* 5.2 7.4 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il