Contacts of the helix formed by residues 460 - 497 (chain A) in PDB entry 4C48
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 460 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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458A PHE 3.4 4.7 + - - -
459A PHE* 1.3 74.0 - - - +
461A GLY* 1.3 65.8 + - - +
463A THR* 2.8 20.1 + - - -
464A GLY 3.1 4.5 + - - -
468A ARG* 4.8 6.1 - - - -
869A SER* 5.7 4.8 - - - +
872A GLN* 5.9 3.0 - - - +
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Residues in contact with GLY 461 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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460A GLY* 1.3 70.4 - - - +
462A SER* 1.3 61.2 - - - -
463A THR* 3.1 5.6 - - - -
465A ALA* 2.9 24.7 + - - +
865A GLN* 4.3 16.2 - - - -
868A LEU* 5.7 5.3 - - - +
869A SER 6.2 0.2 - - - -
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Residues in contact with SER 462 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A ILE* 3.4 25.4 - - - -
39A ALA* 5.5 3.1 - - - -
40A PRO* 6.1 2.5 - - - -
461A GLY* 1.3 69.0 - - - -
463A THR* 1.3 70.7 + - - +
465A ALA* 3.1 11.0 - - - +
466A ILE* 3.0 32.0 + - - +
862A MET* 5.6 6.1 - - - +
865A GLN* 4.9 12.0 + - - +
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Residues in contact with THR 463 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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459A PHE* 4.7 6.6 - - - +
460A GLY 2.8 13.7 + - - -
461A GLY* 4.0 2.4 - - - -
462A SER* 1.3 86.4 + - - +
464A GLY* 1.3 63.1 + - - -
466A ILE* 3.2 11.2 + - - +
467A TYR* 3.0 41.6 + - - -
563A PHE* 4.6 24.0 - - + -
869A SER 5.3 5.5 + - - +
870A GLY* 6.1 2.7 - - - +
925A VAL* 5.0 1.5 - - - +
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Residues in contact with GLY 464 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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456A MET 5.3 0.2 - - - -
457A ALA 4.8 0.5 - - - +
459A PHE* 3.1 41.5 - - - -
460A GLY 3.1 3.6 + - - -
463A THR* 1.3 81.5 + - - +
465A ALA* 1.3 66.9 + - - +
467A TYR* 3.6 4.5 - - - +
468A ARG* 2.9 30.3 + - - +
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Residues in contact with ALA 465 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37A THR 5.2 2.7 - - - +
38A ILE* 3.6 19.5 - - + -
459A PHE 4.3 0.4 + - - -
461A GLY 2.9 9.6 + - - +
462A SER* 3.1 23.6 - - - +
464A GLY* 1.3 76.9 - - - +
466A ILE* 1.3 54.1 + - - +
468A ARG* 3.3 18.2 - - - +
469A GLN* 2.8 26.7 + - - +
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Residues in contact with ILE 466 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A ILE* 4.1 24.9 - - + -
393A LEU* 5.4 7.4 - - + +
462A SER* 3.0 23.6 + - - +
463A THR* 3.4 9.4 - - - +
464A GLY 3.1 0.2 - - - -
465A ALA* 1.3 75.6 - - - +
467A TYR* 1.3 62.7 + - - +
468A ARG 3.2 1.4 + - - -
469A GLN* 3.3 24.6 + - - +
470A PHE* 4.0 10.7 + - + -
563A PHE* 6.3 4.9 - - + -
564A LEU* 4.7 22.0 - - + -
671A ILE* 4.7 18.2 - - + -
925A VAL* 4.1 31.0 - - + -
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Residues in contact with TYR 467 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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456A MET* 3.4 31.9 - - + +
459A PHE* 4.4 22.7 - + + -
463A THR* 3.0 38.5 + - + -
464A GLY* 3.6 11.0 - - - +
466A ILE* 1.3 75.5 - - - +
468A ARG* 1.3 57.2 + - - +
470A PHE* 3.5 9.8 + + + +
471A SER* 2.9 32.0 + - - -
877A TYR* 6.1 0.2 - - - -
924A ASP 4.8 0.2 - - - -
925A VAL* 3.8 33.5 + - + +
928A GLN* 3.2 42.2 - - + +
929A VAL* 5.2 3.6 - - + -
932A LEU* 5.8 3.1 - - + -
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Residues in contact with ARG 468 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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388A PHE* 4.4 10.3 - - + -
457A ALA* 2.8 37.7 + - + +
458A PHE* 4.6 10.5 + - - +
459A PHE 3.5 17.4 + - - -
460A GLY* 4.8 4.4 - - - -
464A GLY 2.9 28.1 + - - +
465A ALA* 3.3 15.0 - - - +
466A ILE 3.1 0.4 - - - -
467A TYR* 1.3 74.3 - - - +
469A GLN* 1.3 77.5 - - - +
471A SER* 4.1 5.6 - - - -
472A ILE* 3.0 30.3 + - + +
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Residues in contact with GLN 469 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36A PRO* 3.5 37.5 + - + +
38A ILE* 5.2 2.2 - - - +
388A PHE* 3.7 19.4 - - + -
393A LEU* 4.3 15.7 - - + +
394A THR* 3.7 26.5 - - + +
465A ALA 2.8 24.9 + - - -
466A ILE* 3.3 14.2 + - - +
468A ARG* 1.3 86.6 - - - +
470A PHE* 1.3 57.2 + - + +
472A ILE* 4.0 1.2 - - - +
473A THR* 2.3 40.6 + - - -
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Residues in contact with PHE 470 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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393A LEU* 3.3 40.4 - - + -
394A THR* 5.5 0.7 - - - -
396A PHE* 4.0 4.5 - + - -
397A GLY* 3.4 26.9 - - - -
400A LEU* 5.5 1.6 - - + -
466A ILE* 4.2 13.9 - - + -
467A TYR* 3.5 8.9 + + + +
468A ARG 3.3 0.4 - - - -
469A GLN* 1.3 79.0 - - + +
471A SER* 1.3 67.9 + - - +
473A THR* 2.9 16.5 + - - -
474A ILE* 3.1 20.2 + - + +
925A VAL* 3.5 32.8 - - + -
926A TYR* 3.4 30.7 - + - -
929A VAL* 3.8 35.2 - - + -
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Residues in contact with SER 471 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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453A PHE* 2.6 38.4 + - - -
454A VAL* 3.4 3.9 + - - -
456A MET* 4.0 4.9 - - - -
457A ALA* 3.0 33.6 + - - +
467A TYR 2.9 20.3 + - - -
468A ARG 3.5 4.7 - - - -
470A PHE* 1.3 77.3 - - - +
472A ILE* 1.3 59.1 + - - +
474A ILE* 3.7 4.1 - - - +
475A VAL* 2.8 22.2 - - - +
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Residues in contact with ILE 472 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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383A LEU* 4.6 10.8 - - + -
386A PHE* 4.6 19.5 - - + -
388A PHE* 3.5 40.6 - - + -
454A VAL* 6.2 0.4 - - - +
457A ALA* 4.4 12.8 - - + -
468A ARG* 3.0 18.6 + - + +
469A GLN 4.0 0.2 - - - +
471A SER* 1.3 79.7 - - - +
473A THR* 1.3 76.0 - - - +
474A ILE 3.1 2.0 - - - -
475A VAL* 2.8 20.2 + - + +
476A SER* 2.9 23.8 + - - -
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Residues in contact with THR 473 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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379A THR* 4.5 4.9 - - + -
383A LEU* 4.3 23.5 - - + +
388A PHE* 5.0 1.7 - - - -
394A THR* 3.8 36.3 - - - +
397A GLY* 5.0 2.5 - - - -
398A MET* 4.6 15.3 - - + +
469A GLN* 2.3 31.3 + - - -
470A PHE* 3.7 4.9 - - - -
472A ILE* 1.3 81.4 - - - +
474A ILE* 1.3 59.2 + - - +
476A SER* 2.5 23.2 + - - -
477A ALA* 3.1 12.2 + - - +
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Residues in contact with ILE 474 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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397A GLY* 4.2 22.7 - - - +
400A LEU* 5.3 4.3 - - + -
401A ALA* 4.5 13.6 - - + +
404A LEU* 5.8 4.5 - - + -
453A PHE* 3.3 44.6 - - + -
470A PHE* 3.1 21.5 + - - +
471A SER* 3.7 7.2 - - - +
472A ILE 3.1 0.6 - - - -
473A THR* 1.3 78.1 - - - +
475A VAL* 1.3 61.3 + - - +
477A ALA* 3.8 5.9 - - - +
478A MET* 2.8 31.6 + - - +
929A VAL* 5.1 14.8 - - + -
932A LEU* 5.3 1.3 - - + -
933A THR* 4.6 18.8 - - + -
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Residues in contact with VAL 475 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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450A SER* 3.6 29.6 - - - -
453A PHE* 3.3 16.6 - - + -
454A VAL* 3.4 21.5 - - + -
471A SER 2.8 29.6 - - - +
472A ILE* 2.8 16.5 + - + +
474A ILE* 1.3 70.2 - - - +
476A SER* 1.3 59.2 + - - +
478A MET* 4.1 7.9 - - + -
479A ALA* 2.8 40.5 + - + +
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Residues in contact with SER 476 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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379A THR* 3.1 15.1 - - - +
382A VAL* 4.1 27.4 - - - -
383A LEU* 4.9 3.5 - - - +
386A PHE* 6.0 0.7 - - - -
472A ILE* 2.9 20.9 + - - +
473A THR* 2.5 28.4 + - - -
475A VAL* 1.3 79.8 - - - +
477A ALA* 1.3 63.8 + - - -
478A MET 3.0 0.2 + - - -
479A ALA* 3.1 7.7 + - - +
480A LEU* 3.0 23.9 + - - +
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Residues in contact with ALA 477 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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375A VAL* 3.3 3.3 - - - +
376A LEU* 6.1 0.2 - - - -
379A THR* 3.5 27.3 - - + +
398A MET* 5.6 1.1 - - + -
401A ALA* 3.6 29.6 - - + -
405A LEU* 5.0 5.8 - - + -
473A THR* 3.1 15.0 + - + +
474A ILE 3.8 2.9 - - - +
476A SER* 1.3 81.2 + - - +
478A MET* 1.3 56.4 + - - +
480A LEU* 3.3 6.8 - - - +
481A SER* 3.0 26.9 + - - -
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Residues in contact with MET 478 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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404A LEU* 4.1 17.3 - - + -
405A LEU* 5.6 0.9 - - - -
408A ASP* 4.5 4.0 - - - +
446A ALA* 3.2 45.5 - - + +
449A LEU* 3.4 37.7 - - + -
450A SER* 4.2 2.0 - - - -
453A PHE* 4.2 6.5 - - + -
474A ILE 2.8 22.7 + - - +
475A VAL* 3.9 20.6 - - + +
476A SER 3.1 0.2 - - - -
477A ALA* 1.3 71.7 - - - +
479A ALA* 1.3 79.2 + - + +
481A SER* 2.6 25.9 + - - +
482A VAL* 2.8 14.8 + - + +
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Residues in contact with ALA 479 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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446A ALA* 5.5 0.9 - - - -
475A VAL* 2.8 25.9 + - + +
476A SER* 3.9 3.4 - - - +
478A MET* 1.3 83.4 - - + +
480A LEU* 1.3 60.8 + - - +
482A VAL* 3.2 9.4 + - - +
483A LEU* 2.9 29.9 + - + +
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Residues in contact with LEU 480 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19A ILE* 6.2 3.4 - - + -
374A VAL 5.0 0.2 - - - +
375A VAL* 3.1 39.9 - - + +
378A GLY* 3.6 19.7 - - - +
379A THR* 3.7 9.9 - - - +
382A VAL* 3.6 31.4 - - + -
476A SER* 3.0 26.6 + - - +
477A ALA 3.3 17.9 - - - +
479A ALA* 1.3 73.6 - - - +
481A SER* 1.3 68.6 + - - +
483A LEU* 2.9 8.6 + - + +
484A VAL* 2.8 35.6 + - + +
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Residues in contact with SER 481 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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375A VAL* 3.6 24.9 - - - +
405A LEU* 3.7 15.8 - - - +
408A ASP* 2.6 30.6 + - - +
477A ALA 3.0 20.0 + - - -
478A MET* 2.6 22.6 + - - -
480A LEU* 1.3 77.3 - - - +
482A VAL* 1.3 53.8 + - - +
484A VAL* 3.4 2.3 - - - +
485A ALA* 3.0 30.8 + - - +
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Residues in contact with VAL 482 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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408A ASP* 4.0 15.7 - - - +
442A LEU* 3.7 26.2 - - + +
443A VAL* 4.7 13.0 - - + +
445A ILE* 5.5 2.2 - - + -
446A ALA* 3.5 29.2 - - + -
478A MET* 2.8 17.2 + - + +
479A ALA* 3.4 9.9 - - - +
481A SER* 1.3 73.7 + - - +
483A LEU* 1.3 64.6 + - + +
485A ALA* 3.2 4.4 + - - +
486A LEU* 2.7 47.2 + - + +
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Residues in contact with LEU 483 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A MET* 5.4 4.0 - - + -
479A ALA 2.9 17.4 + - - +
480A LEU* 2.9 10.7 + - + +
482A VAL* 1.3 84.6 - - + +
484A VAL* 1.3 59.2 + - + +
486A LEU* 3.4 14.1 + - + +
487A ILE* 2.9 47.4 + - + +
2047A LMT 4.7 19.3 - - + -
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Residues in contact with VAL 484 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A ILE* 6.0 2.9 - - + -
19A ILE* 4.3 19.5 - - + -
371A ALA* 4.5 9.9 - - + +
374A VAL* 4.3 23.6 - - + +
375A VAL* 3.3 37.0 - - + +
480A LEU* 2.8 30.1 + - + +
481A SER 3.4 5.6 - - - +
483A LEU* 1.3 69.2 - - + +
485A ALA* 1.3 66.5 + - + +
486A LEU 3.1 0.9 - - - -
487A ILE* 3.0 2.9 + - - +
488A LEU* 2.7 42.3 + - + +
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Residues in contact with ALA 485 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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371A ALA* 6.0 1.1 - - - -
408A ASP* 4.0 29.4 - - + +
409A ALA* 4.4 8.1 - - + +
412A VAL* 5.0 4.5 - - + +
442A LEU* 5.5 7.4 - - + +
481A SER 3.0 17.8 + - - +
482A VAL* 3.7 4.7 - - - +
484A VAL* 1.3 83.4 - - + +
486A LEU* 1.3 57.0 + - - +
489A THR* 3.3 16.4 - - + +
490A PRO* 2.8 25.3 - - - +
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Residues in contact with LEU 486 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A MET* 3.8 36.3 - - + -
2A PRO* 3.7 33.3 - - + +
5A PHE* 4.8 0.2 - - - -
435A MET* 6.2 1.1 - - - -
439A GLN* 4.5 20.2 - - + +
442A LEU* 5.0 13.4 - - + +
482A VAL* 2.7 28.2 + - + +
483A LEU* 3.4 20.9 - - + +
485A ALA* 1.3 75.1 - - - +
487A ILE* 1.3 58.9 + - + +
490A PRO* 3.5 15.6 - - + +
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Residues in contact with ILE 487 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A MET* 3.5 26.9 - - + -
5A PHE* 3.3 66.6 - - + +
12A ALA* 3.6 17.3 - - + +
15A ILE* 4.5 20.2 - - + -
483A LEU* 2.9 37.1 + - + +
484A VAL* 4.1 2.5 - - - +
486A LEU* 1.3 81.6 - - + +
488A LEU* 1.3 69.0 + - + +
489A THR 3.6 0.2 - - - -
490A PRO* 3.8 2.8 - - - +
491A ALA* 3.6 9.5 + - - +
2038A LMT 6.2 0.4 - - + -
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Residues in contact with LEU 488 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12A ALA* 4.0 19.5 - - + +
13A TRP* 4.4 9.6 - - + +
16A ALA* 3.9 24.5 - - + -
370A ILE* 4.9 4.0 - - + -
371A ALA* 4.3 16.6 - - + +
374A VAL* 4.1 30.5 - - + -
484A VAL* 2.7 24.2 + - + +
487A ILE* 1.3 78.4 - - + +
489A THR* 1.3 53.6 + - - +
491A ALA* 3.0 5.9 + - + +
492A LEU* 2.8 66.4 + - + +
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Residues in contact with THR 489 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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367A ILE* 4.4 4.8 - - - +
371A ALA* 3.8 23.2 - - - +
409A ALA* 4.0 14.0 - - - +
412A VAL* 3.4 32.5 - - + -
413A VAL* 3.9 17.7 - - + +
484A VAL 3.6 1.6 + - - -
485A ALA* 3.3 19.8 - - - +
488A LEU* 1.3 78.6 - - - +
490A PRO* 1.4 57.1 - - + +
492A LEU* 3.6 7.9 - - - +
493A CYS* 2.6 37.0 + - - +
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Residues in contact with PRO 490 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2A PRO* 4.1 5.2 - - + +
6A ILE* 3.6 27.6 - - + +
412A VAL* 5.2 0.2 - - + -
431A THR* 3.9 1.1 + - - +
435A MET* 3.7 33.4 - - + -
485A ALA 2.8 26.2 - - - +
486A LEU* 3.5 19.3 - - - +
487A ILE 3.8 7.9 - - - +
488A LEU 3.5 2.9 - - - -
489A THR* 1.4 80.4 - - + +
491A ALA* 1.3 54.9 + - - +
493A CYS* 3.2 4.8 + - + +
494A ALA* 2.7 37.6 + - - +
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Residues in contact with ALA 491 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5A PHE 3.9 20.9 - - - +
6A ILE* 4.5 2.1 - - - +
9A PRO* 4.0 11.7 - - + +
12A ALA* 3.8 19.1 - - + -
13A TRP* 5.7 1.6 - - - +
487A ILE 3.6 13.1 + - - +
488A LEU* 3.0 10.0 + - + +
490A PRO* 1.3 78.0 - - - +
492A LEU* 1.3 64.7 + - + +
494A ALA* 3.0 15.4 + - - +
495A THR* 3.1 23.1 + - - +
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Residues in contact with LEU 492 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A TRP* 3.3 44.0 - - + +
367A ILE* 3.9 36.1 - - + +
370A ILE* 4.5 12.8 - - + -
371A ALA* 5.0 2.0 - - + -
488A LEU* 2.8 51.8 + - + +
489A THR* 3.7 4.9 - - - +
491A ALA* 1.3 72.6 - - + +
493A CYS* 1.3 57.4 + - - +
495A THR* 3.7 5.4 - - - +
496A MET* 2.9 49.6 + - + +
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Residues in contact with CYS 493 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367A ILE* 4.4 5.8 - - - +
412A VAL* 4.6 3.6 - - - -
413A VAL* 3.4 42.4 - - - -
416A VAL* 4.1 10.3 - - - -
427A PRO* 3.9 1.8 - - - +
431A THR* 3.5 14.1 - - - +
489A THR 2.6 24.0 + - - +
490A PRO* 3.4 5.6 - - + +
492A LEU* 1.3 74.2 - - - +
494A ALA* 1.3 63.1 + - - +
495A THR 3.1 1.6 + - - -
497A LEU* 3.1 51.8 + - + +
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Residues in contact with ALA 494 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6A ILE* 3.5 20.0 - - + +
427A PRO* 3.5 17.5 - - - +
428A LYS* 3.1 43.3 - - + +
431A THR* 3.7 12.1 - - + -
490A PRO 2.7 20.9 + - - +
491A ALA 3.0 6.0 + - - +
493A CYS* 1.3 73.8 - - - +
495A THR* 1.3 58.4 + - - +
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Residues in contact with THR 495 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6A ILE 4.9 0.4 - - - +
9A PRO* 3.7 29.8 - - + +
13A TRP* 5.5 3.3 + - - -
363A ARG* 3.4 12.1 + - - -
427A PRO* 5.7 0.6 - - - +
428A LYS* 4.3 8.7 - - + +
491A ALA 3.2 18.0 + - - +
492A LEU* 3.4 9.0 + - - +
493A CYS 3.1 0.2 - - - -
494A ALA* 1.3 87.6 - - + +
496A MET* 1.3 71.5 + - - +
497A LEU 3.6 5.3 + - - +
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Residues in contact with MET 496 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A TRP* 4.2 12.6 - - - -
363A ARG* 2.5 55.5 + - + +
366A LEU* 4.4 10.8 - - + -
367A ILE* 3.7 32.2 - - + +
370A ILE* 3.9 27.6 - - + -
492A LEU* 2.9 38.7 + - + +
495A THR* 1.3 83.9 + - - +
497A LEU* 1.3 61.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 497 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359A LEU* 6.0 2.0 - - + -
363A ARG* 4.5 4.5 + - - -
364A ALA* 4.5 16.8 - - + +
367A ILE* 4.0 19.1 - - + -
413A VAL* 4.8 9.0 - - + +
416A VAL* 4.0 20.4 - - + -
417A GLU* 4.1 18.4 - - + +
420A MET* 4.8 9.0 - - - -
427A PRO* 3.8 21.6 - - + +
493A CYS* 3.1 52.1 + - + +
495A THR 3.6 5.1 - - - +
496A MET* 1.3 81.2 - - - +
498A LYS* 1.3 64.3 + - - +
499A PRO* 3.8 3.5 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il