Contacts of the helix formed by residues 50 - 76 (chain A) in PDB entry 4CZ8
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 50 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3A GLU* 4.5 15.9 - - - +
47A LYS* 4.4 18.6 - - + +
48A LEU 3.4 12.3 - - - +
49A ILE* 1.3 86.5 - - - +
51A ARG* 1.3 61.0 + - - +
52A ASP* 3.2 12.1 - - + +
53A LEU* 3.1 29.4 + - + +
54A ALA* 2.9 23.6 + - - +
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Residues in contact with ARG 51 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A PRO* 5.5 4.3 - - + -
47A LYS* 4.3 15.5 - - - +
49A ILE 3.5 3.6 + - - -
50A PRO* 1.3 68.3 - - - +
52A ASP* 1.3 65.3 + - - +
54A ALA* 3.2 8.7 + - - +
55A HIS* 2.9 50.8 + - - +
311A ALA 4.2 4.7 - - - +
312A GLU* 3.1 42.3 + - - +
313A MSE 4.3 9.6 - - - -
314A ASN* 4.1 19.0 + - - +
374A LEU* 4.0 8.9 - - - +
378A LEU* 6.4 0.2 - - - +
391A GLU* 2.4 40.5 + - - -
394A MSE 3.9 4.9 - - - +
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Residues in contact with ASP 52 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50A PRO* 4.4 10.1 - - + +
51A ARG* 1.3 76.4 + - - +
53A LEU* 1.3 66.1 + - - +
55A HIS* 3.0 16.8 + - - +
56A GLU* 3.0 26.5 + - + +
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Residues in contact with LEU 53 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5A SER 5.5 0.4 - - - +
6A LEU* 3.6 32.3 - - + -
9A ALA* 3.8 29.2 - - + -
49A ILE* 4.6 6.1 - - + -
50A PRO* 3.1 34.8 + - + +
52A ASP* 1.3 78.0 - - - +
54A ALA* 1.3 56.5 + - - +
56A GLU* 3.0 13.8 + - + +
57A ILE* 2.9 41.1 + - + +
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Residues in contact with ALA 54 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49A ILE* 4.4 12.7 - - + +
50A PRO 2.9 12.3 + - - +
51A ARG* 3.2 15.7 - - - +
52A ASP 3.1 0.2 - - - -
53A LEU* 1.3 76.7 - - - +
55A HIS* 1.3 56.8 + - - +
57A ILE* 3.4 2.9 + - - +
58A PHE* 2.9 31.7 + - - +
308A LEU* 4.1 18.5 - - + +
311A ALA* 4.4 9.6 - - + +
312A GLU* 4.2 21.1 - - + -
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Residues in contact with HIS 55 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51A ARG* 2.9 47.0 + - - +
52A ASP* 3.0 13.4 + - - +
54A ALA* 1.3 75.1 - - - +
56A GLU* 1.3 61.0 + - + +
58A PHE* 3.2 2.1 + - - +
59A ASP* 2.9 41.1 + - - +
62A ARG* 6.2 0.2 - - - +
312A GLU* 2.4 44.9 + - + -
371A SER* 4.8 3.2 + - - -
374A LEU* 3.5 33.7 - - + +
375A SER* 5.5 8.5 - - - -
378A LEU* 4.5 15.8 - - + +
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Residues in contact with GLU 56 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A ASP* 3.0 18.7 + - + +
53A LEU* 3.0 17.7 + - + +
55A HIS* 1.3 80.5 - - + +
57A ILE* 1.3 64.3 + - + +
59A ASP* 3.5 21.5 + - - +
60A PHE 3.9 1.2 + - - -
379A LYS* 5.0 9.8 + - - -
1424A PTY 3.4 42.2 - - + +
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Residues in contact with ILE 57 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6A LEU* 3.6 24.0 - - + -
9A ALA* 6.3 0.9 - - + -
10A LEU* 3.6 36.1 - - + -
13A ILE* 5.2 3.4 - - + -
49A ILE* 6.0 1.3 - - + -
53A LEU* 2.9 27.5 + - + +
54A ALA* 3.8 6.3 - - - +
56A GLU* 1.3 74.6 - - + +
58A PHE* 1.3 60.8 + - - +
60A PHE* 3.0 7.8 + - - +
61A VAL* 2.9 39.3 + - + +
304A PHE* 4.7 4.3 - - + -
308A LEU* 3.6 26.9 - - + -
1424A PTY 3.9 20.6 - - + -
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Residues in contact with PHE 58 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54A ALA 2.9 16.2 + - - +
55A HIS 3.7 2.9 - - - +
57A ILE* 1.3 77.5 - - - +
59A ASP* 1.3 57.6 + - - +
61A VAL* 4.3 1.8 - - + -
62A ARG* 2.9 58.0 + - - +
305A ILE* 3.5 29.4 - - + -
308A LEU* 3.6 24.4 - - + +
309A LEU* 3.4 26.0 - - - -
312A GLU* 3.0 29.4 - - - +
367A SER 3.3 23.3 - - - -
368A ALA* 3.7 24.7 - - + -
371A SER* 4.4 2.5 - - - -
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Residues in contact with ASP 59 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A HIS* 2.9 26.7 + - - +
56A GLU* 3.8 15.0 - - - +
57A ILE 3.1 0.6 - - - -
58A PHE* 1.3 76.8 - - - +
60A PHE* 1.3 59.5 + - - +
62A ARG* 2.7 34.7 + - - +
63A VAL* 4.0 9.4 - - - +
375A SER* 4.1 14.1 + - - -
379A LYS* 2.8 32.7 + - - +
1424A PTY 3.3 45.5 + - - +
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Residues in contact with PHE 60 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A GLU 3.9 0.8 + - - -
57A ILE 3.0 8.1 + - - +
59A ASP* 1.3 77.7 - - - +
61A VAL* 1.3 70.3 + - + +
62A ARG 3.0 2.4 + - - -
63A VAL* 3.1 5.6 + - - +
64A PHE* 3.0 53.1 + + + +
1424A PTY 3.5 129.0 - - + +
10B LEU* 5.3 7.0 - - + -
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Residues in contact with VAL 61 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A ILE* 2.9 34.6 + - + +
58A PHE* 4.3 4.3 - - + -
60A PHE* 1.3 86.6 - - + +
62A ARG* 1.3 64.7 + - - +
64A PHE* 5.8 0.9 - - - -
65A GLY* 2.9 25.8 + - - +
66A LEU 3.7 0.9 + - - -
301A ALA* 4.3 4.3 - - - +
304A PHE* 3.9 27.4 - - + -
305A ILE* 3.9 28.3 - - + +
308A LEU* 3.7 13.5 - - + -
1424A PTY 4.6 11.9 - - + -
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Residues in contact with ARG 62 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A HIS* 6.2 0.2 - - - +
58A PHE* 2.9 63.1 + - + +
59A ASP* 2.7 37.9 + - - +
60A PHE 3.0 0.6 - - - -
61A VAL* 1.3 78.9 - - - +
63A VAL* 1.3 68.0 + - + +
66A LEU* 2.9 44.5 + - + +
255A TYR* 5.5 2.7 - - - +
305A ILE* 5.9 0.2 - - - -
312A GLU* 4.8 0.6 + - - -
368A ALA* 3.0 26.1 + - + +
369A LEU* 4.8 3.8 - - + -
371A SER* 3.9 21.2 + - - -
372A LEU* 4.2 38.2 - - - +
375A SER* 4.6 2.2 + - - -
1424A PTY 5.2 4.5 + - - -
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Residues in contact with VAL 63 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A ASP 4.0 13.9 - - - +
60A PHE 3.1 5.8 + - - +
62A ARG* 1.3 84.2 - - + +
64A PHE* 1.3 68.0 + - - +
66A LEU* 3.9 0.9 - - - +
67A VAL* 3.0 29.0 + - + +
241A PHE* 5.5 1.3 - - + -
244A PHE* 4.1 28.9 - - + -
245A PHE* 5.8 0.9 - - + -
255A TYR* 4.3 15.9 - - - +
1424A PTY 4.2 43.5 - - + +
7B ALA* 5.9 0.9 - - + -
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Residues in contact with PHE 64 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60A PHE* 3.0 33.8 + + + +
61A VAL* 5.8 0.7 - - + -
63A VAL* 1.3 80.2 - - - +
65A GLY* 1.3 67.8 + - - +
67A VAL* 3.3 2.1 + - - +
68A ILE* 3.0 39.0 + - + +
237A LEU* 5.2 2.2 - - + -
241A PHE* 3.3 36.0 - + - -
297A LEU* 4.5 17.5 - - + -
301A ALA* 5.7 0.4 - - + -
1424A PTY 3.5 99.4 - - + -
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Residues in contact with GLY 65 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A VAL* 2.9 25.9 + - - +
64A PHE* 1.3 78.8 - - - +
66A LEU* 1.3 56.3 + - - -
68A ILE* 3.3 3.4 - - - +
69A ILE* 2.9 39.2 + - - +
301A ALA* 3.6 23.1 - - - -
305A ILE* 4.9 1.8 - - - -
1424A PTY 6.2 0.2 - - - -
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Residues in contact with LEU 66 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A VAL 3.7 0.6 + - - -
62A ARG* 2.9 41.5 + - + +
63A VAL 3.9 1.3 - - - +
65A GLY* 1.3 70.9 - - - +
67A VAL* 1.3 64.1 + - - +
69A ILE* 3.8 3.8 - - + +
70A LEU* 2.9 34.6 + - + +
163A ILE* 4.2 19.7 - - + -
255A TYR* 4.0 18.2 - - + +
305A ILE* 4.4 9.8 - - + +
364A VAL* 4.8 4.3 - - + -
365A VAL* 4.2 27.4 - - + -
368A ALA* 3.8 32.3 - - + -
369A LEU* 4.3 11.9 - - + -
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Residues in contact with VAL 67 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A VAL* 3.0 23.9 + - + +
64A PHE 3.6 3.8 - - - +
66A LEU* 1.3 76.5 - - - +
68A ILE* 1.3 58.3 + - - +
70A LEU* 3.9 2.7 - - - +
71A PHE* 2.9 28.6 + - - +
240A ALA* 4.9 4.3 - - + +
241A PHE* 3.6 36.8 - - + -
244A PHE* 3.6 43.1 - - + -
255A TYR* 3.7 16.6 - - + -
258A ALA* 4.3 14.4 - - + +
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Residues in contact with ILE 68 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A PHE* 3.0 34.9 + - + +
65A GLY* 3.3 11.7 - - - +
67A VAL* 1.3 79.7 - - - +
69A ILE* 1.3 56.7 + - - +
71A PHE* 3.9 21.5 - - + -
72A THR* 2.7 37.8 + - - -
237A LEU* 3.9 24.0 - - + -
240A ALA* 5.6 1.3 - - + -
241A PHE* 4.7 8.5 - - + -
294A ASN* 3.8 33.4 - - + +
297A LEU* 4.0 19.1 - - + +
298A ALA* 4.5 1.6 - - - +
301A ALA* 4.3 11.2 - - + -
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Residues in contact with ILE 69 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A GLY 2.9 24.4 + - - +
66A LEU* 3.8 5.4 - - + +
68A ILE* 1.3 76.3 - - - +
70A LEU* 1.3 64.9 + - + +
72A THR* 3.3 4.5 + - - -
73A GLU* 2.9 37.2 + - - +
159A ASP* 5.5 0.2 - - - +
298A ALA* 3.4 25.8 - - + +
301A ALA* 3.7 7.2 - - + -
302A THR* 3.5 32.5 - - - +
305A ILE* 3.9 8.7 - - + -
364A VAL* 3.8 26.7 - - + -
365A VAL* 6.2 0.2 - - + -
1425A TAM 3.7 22.0 + - + -
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Residues in contact with LEU 70 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A LEU* 2.9 23.7 + - + +
67A VAL* 3.9 2.7 - - - +
69A ILE* 1.3 81.6 - - + +
71A PHE* 1.3 65.6 + - - +
73A GLU* 2.9 37.8 + - - +
74A GLY 2.9 10.9 + - - -
159A ASP* 3.5 20.6 - - + +
160A PRO* 4.1 18.4 - - + -
163A ILE* 4.1 12.1 - - + -
255A TYR* 3.8 31.0 - - + +
258A ALA* 5.4 0.2 - - + -
259A THR* 3.5 28.7 - - + +
365A VAL* 4.4 7.6 - - + -
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Residues in contact with PHE 71 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67A VAL 2.9 19.1 + - - +
68A ILE* 3.8 19.1 - - + +
70A LEU* 1.3 75.3 - - - +
72A THR* 1.3 63.9 + - - +
74A GLY 3.4 7.3 + - - -
75A HIS* 3.7 21.6 + + - -
236A SER 4.1 11.4 - - - -
237A LEU* 5.2 0.4 - - - -
240A ALA* 3.5 32.8 - - + -
258A ALA* 3.2 34.0 - - + +
259A THR* 4.5 0.6 - - - +
261A THR* 4.2 6.7 - - + -
262A GLY* 3.7 28.7 - - - -
265A LEU* 4.0 16.4 - - + -
290A GLU* 3.8 5.8 - - - -
294A ASN* 3.5 26.5 - - + -
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Residues in contact with THR 72 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A ILE* 2.7 23.2 + - - +
69A ILE 3.3 5.2 - - - -
71A PHE* 1.3 76.8 - - - +
73A GLU* 1.3 65.5 + - - +
75A HIS* 3.2 26.9 + - + +
76A ASN* 4.0 10.0 + - - +
291A VAL* 6.2 0.9 - - + -
294A ASN* 3.1 27.1 + - + +
295A ASP* 3.5 41.3 - - + +
298A ALA* 3.5 5.2 - - + +
1425A TAM 4.0 9.2 - - - +
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Residues in contact with GLU 73 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A ILE* 2.9 24.6 + - - +
70A LEU* 2.9 25.6 + - - +
72A THR* 1.3 75.8 - - - +
74A GLY* 1.3 62.8 + - - +
76A ASN* 3.2 19.9 + - - +
130A ASP* 4.5 6.8 - - - +
155A SER* 5.1 2.9 + - - -
156A ILE* 3.8 42.3 - - + +
159A ASP* 2.9 33.7 - - - +
259A THR* 5.6 1.6 - - + +
364A VAL* 5.9 1.2 - - - +
1425A TAM 3.6 35.1 + - - +
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Residues in contact with GLY 74 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70A LEU 2.9 11.0 + - - -
71A PHE 3.4 3.1 + - - -
72A THR 3.2 1.2 - - - -
73A GLU* 1.3 76.9 - - - +
75A HIS* 1.3 60.8 + - - +
76A ASN 3.3 0.7 + - - -
77A LEU* 3.4 10.4 + - - +
156A ILE* 5.0 6.0 - - - +
259A THR* 3.6 24.7 - - - -
262A GLY 3.3 8.3 - - - -
263A ILE* 3.2 25.6 - - - +
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Residues in contact with HIS 75 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A PHE* 3.7 20.0 + + - -
72A THR* 3.2 18.1 + - + +
73A GLU 3.2 0.8 - - - -
74A GLY* 1.3 76.0 - - - +
76A ASN* 1.3 64.4 - - - +
77A LEU 3.2 8.5 + - - +
262A GLY* 2.7 42.3 + - - -
265A LEU* 3.6 20.1 - - + +
266A GLY* 3.7 22.3 + - - +
287A ILE* 5.6 2.6 - - + +
290A GLU* 2.8 26.5 + - - -
291A VAL* 3.6 33.0 - - + -
294A ASN* 5.9 2.0 - - + -
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Residues in contact with ASN 76 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A THR* 4.0 13.9 + - - +
73A GLU* 3.2 14.5 + - - +
74A GLY 3.2 2.0 - - - -
75A HIS* 1.3 83.2 - - - +
77A LEU* 1.3 58.2 + - - +
78A SER 4.2 0.7 + - - -
152A VAL* 5.0 8.5 - - + +
156A ILE* 4.2 10.4 - - + +
291A VAL* 5.8 3.5 - - - +
295A ASP* 5.0 11.2 + - - +
1423A BOG 5.9 2.8 - - - +
1425A TAM 4.7 14.1 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il