Contacts of the helix formed by residues 2171 - 2212 (chain B) in PDB entry 4D0N
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN2171 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2079B LYS* 4.2 16.2 + - - +
2080B ARG* 4.7 9.8 - - - +
2168B THR* 4.3 9.6 - - + +
2170B ASP* 1.3 79.0 - - - +
2172B GLU* 1.3 59.1 + - - +
2173B VAL* 3.5 7.8 + - - +
2174B GLU* 3.3 30.2 + - + +
2175B GLN* 2.9 35.4 + - - +
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Residues in contact with GLU2172 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2170B ASP* 5.9 1.1 - - - -
2171B ASN* 1.3 74.1 + - - +
2173B VAL* 1.3 60.6 + - + +
2175B GLN* 3.5 15.7 - - - +
2176B GLU* 2.8 50.1 + - + +
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Residues in contact with VAL2173 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2080B ARG* 3.8 28.7 - - - +
2171B ASN* 3.3 7.6 + - - +
2172B GLU* 1.3 75.5 - - + +
2174B GLU* 1.3 61.6 + - - +
2176B GLU* 3.5 12.3 + - + +
2177B ASP* 2.9 34.6 + - - +
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Residues in contact with GLU2174 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1999B ARG* 2.9 31.7 + - - +
2079B LYS 4.3 1.3 - - - +
2080B ARG* 3.3 24.5 + - - +
2081B ILE* 2.9 24.6 + - - +
2082B GLY* 2.9 26.5 + - - -
2168B THR* 3.7 12.6 - - + -
2171B ASN* 3.3 27.3 + - + +
2173B VAL* 1.3 76.6 - - - +
2175B GLN* 1.3 66.5 + - - +
2177B ASP* 3.2 1.3 + - - +
2178B LEU* 2.8 36.8 + - + +
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Residues in contact with GLN2175 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2165B LEU* 3.4 23.7 - - + +
2168B THR* 2.8 34.7 + - + +
2169B LYS* 2.8 27.5 + - - +
2170B ASP* 3.7 2.1 - - - +
2171B ASN 2.9 19.5 + - - +
2172B GLU* 3.5 24.1 - - - +
2174B GLU* 1.3 76.0 - - - +
2176B GLU* 1.3 59.3 + - + +
2178B LEU* 4.5 1.8 - - - -
2179B ALA* 2.9 30.9 + - - +
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Residues in contact with GLU2176 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2172B GLU* 2.8 42.9 + - - +
2173B VAL* 3.8 12.7 - - - +
2175B GLN* 1.3 76.0 - - + +
2177B ASP* 1.3 59.0 + - - +
2179B ALA* 3.4 7.2 + - - +
2180B GLN* 3.0 29.9 + - - +
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Residues in contact with ASP2177 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2080B ARG* 2.6 34.2 + - - +
2082B GLY* 3.8 17.9 - - - +
2083B ASP* 3.5 12.9 + - - +
2086B VAL* 3.2 19.3 - - + +
2173B VAL* 2.9 24.2 + - - +
2174B GLU 3.6 3.6 - - - +
2176B GLU* 1.3 78.1 - - - +
2178B LEU* 1.3 57.3 + - - +
2180B GLN* 3.1 11.5 + - - +
2181B SER* 2.8 25.5 + - - -
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Residues in contact with LEU2178 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2081B ILE* 4.0 16.2 - - + -
2082B GLY* 3.8 18.2 - - - -
2085B LEU* 4.0 14.1 - - + -
2161B PHE* 4.7 7.4 - - - +
2164B ILE* 3.8 17.9 - - + -
2165B LEU* 3.7 27.4 - - + -
2168B THR* 3.5 26.0 - - - +
2174B GLU* 2.8 38.0 + - + +
2175B GLN 3.7 3.6 - - - +
2177B ASP* 1.3 71.3 - - - +
2179B ALA* 1.3 60.4 + - - +
2181B SER* 2.9 7.6 + - - +
2182B LEU* 2.9 30.7 + - - +
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Residues in contact with ALA2179 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2165B LEU* 4.0 20.6 - - + +
2175B GLN 2.9 18.1 + - - +
2176B GLU* 3.5 7.9 - - - +
2178B LEU* 1.3 76.3 - - - +
2180B GLN* 1.3 62.8 + - - +
2182B LEU* 3.3 7.4 + - - +
2183B SER* 3.1 22.5 + - - -
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Residues in contact with GLN2180 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2086B VAL* 4.2 18.5 - - + +
2176B GLU 3.0 14.6 + - - +
2177B ASP* 3.3 17.8 - - - +
2179B ALA* 1.3 77.8 - - - +
2181B SER* 1.3 57.3 + - - +
2183B SER* 3.3 7.3 + - - -
2184B LEU* 2.9 50.4 + - + +
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Residues in contact with SER2181 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2082B GLY 4.5 0.2 - - - -
2085B LEU* 3.6 34.1 - - - +
2086B VAL* 3.8 13.9 - - - +
2089B PHE* 4.8 1.7 - - - +
2161B PHE* 3.6 18.6 - - - +
2177B ASP 2.8 15.9 + - - -
2178B LEU* 2.9 20.7 + - - -
2180B GLN* 1.3 73.1 - - - +
2182B LEU* 1.3 55.9 + - - +
2184B LEU* 3.8 7.5 - - - +
2185B VAL* 3.0 32.6 + - - +
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Residues in contact with LEU2182 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2158B PRO* 3.4 33.7 - - + +
2161B PHE* 4.4 8.5 - - + -
2162B GLN* 3.6 32.8 - - + +
2165B LEU* 4.6 14.4 - - + -
2178B LEU 2.9 17.2 + - - +
2179B ALA* 3.5 6.1 - - - +
2181B SER* 1.3 78.6 + - - +
2183B SER* 1.3 60.9 + - - +
2185B VAL* 3.1 20.6 - - - +
2186B LYS* 3.3 40.0 + - - +
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Residues in contact with SER2183 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2179B ALA 3.1 10.1 + - - -
2180B GLN* 3.3 8.7 + - - -
2182B LEU* 1.3 78.8 - - - +
2184B LEU* 1.3 64.5 + - - +
2186B LYS* 3.3 12.7 + - - +
2187B ASP* 3.0 31.2 + - - +
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Residues in contact with LEU2184 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2086B VAL* 4.3 14.1 - - + +
2089B PHE* 3.4 28.4 - - + +
2090B SER* 4.1 20.2 - - - -
2180B GLN* 2.9 43.4 + - + +
2181B SER* 3.8 6.3 - - - +
2182B LEU 3.4 0.2 - - - -
2183B SER* 1.3 78.0 - - - +
2185B VAL* 1.3 56.6 + - - +
2187B ASP* 3.1 17.7 + - + +
2188B VAL* 3.0 28.2 + - - +
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Residues in contact with VAL2185 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2089B PHE* 3.6 38.3 - - + +
2154B ILE* 4.3 4.0 - - + +
2157B TYR* 3.7 18.8 - - + -
2158B PRO* 3.9 17.9 - - + -
2161B PHE* 3.9 18.8 - - + -
2181B SER 3.0 17.4 + - - +
2182B LEU* 3.1 18.6 - - - +
2184B LEU* 1.3 75.6 - - - +
2186B LYS* 1.3 56.7 + - - +
2188B VAL* 3.2 5.4 + - + +
2189B ILE* 2.9 39.0 + - + +
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Residues in contact with LYS2186 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A TYR* 3.6 24.2 + - - +
2158B PRO* 4.2 17.5 - - + -
2162B GLN* 5.6 2.2 - - - +
2182B LEU* 3.3 47.7 + - - +
2183B SER* 3.3 12.0 + - - +
2184B LEU 3.2 0.6 - - - -
2185B VAL* 1.3 72.7 - - - +
2187B ASP* 1.3 58.3 + - - +
2189B ILE* 3.2 4.3 + - - +
2190B GLY* 2.8 32.7 + - - -
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Residues in contact with ASP2187 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2098B LYS* 4.3 9.8 + - - +
2183B SER* 3.0 21.6 + - - +
2184B LEU* 3.1 21.3 + - + +
2186B LYS* 1.3 75.8 - - - +
2188B VAL* 1.3 65.4 + - + +
2190B GLY* 3.4 1.6 + - - -
2191B ALA* 3.0 24.1 + - - +
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Residues in contact with VAL2188 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2089B PHE* 4.4 17.3 - - + +
2094B ALA* 4.0 32.8 - - + +
2097B LEU* 3.9 22.7 - - + -
2098B LYS* 4.1 18.1 - - + +
2154B ILE* 3.7 24.9 - - + -
2184B LEU 3.0 16.6 + - - +
2185B VAL* 3.2 9.8 + - - +
2187B ASP* 1.3 76.2 - - + +
2189B ILE* 1.3 57.4 + - - +
2191B ALA* 3.3 3.1 + - - +
2192B VAL* 3.0 26.9 + - + +
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Residues in contact with ILE2189 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A TYR* 3.5 35.0 - - + +
69A LEU* 3.8 8.7 - - + -
2154B ILE* 3.4 36.6 - - + +
2155B THR* 3.6 20.0 - - + -
2158B PRO* 3.3 34.3 - - + -
2185B VAL* 2.9 22.6 + - + +
2186B LYS* 3.7 6.3 - - - +
2188B VAL* 1.3 73.0 - - - +
2190B GLY* 1.3 60.4 + - - +
2192B VAL* 3.1 7.2 + - - +
2193B ASP* 2.8 29.3 + - - +
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Residues in contact with GLY2190 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A TYR* 4.1 12.9 - - - -
2186B LYS 2.8 20.1 + - - -
2187B ASP* 3.8 2.0 - - - -
2189B ILE* 1.3 72.1 - - - +
2191B ALA* 1.3 58.2 + - - +
2193B ASP* 3.5 4.9 + - - +
2194B SER* 3.0 31.1 + - - -
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Residues in contact with ALA2191 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2098B LYS* 3.6 33.4 - - + +
2187B ASP 3.0 17.2 + - - +
2188B VAL 3.7 1.6 - - - +
2190B GLY* 1.3 73.0 - - - +
2192B VAL* 1.3 61.7 + - - +
2194B SER* 3.5 6.6 + - - -
2195B LYS* 3.0 28.8 + - - +
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Residues in contact with VAL2192 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A LEU* 4.1 22.2 - - + -
2098B LYS* 3.9 21.8 - - - +
2101B TYR* 3.7 45.5 - - + +
2102B GLY* 4.1 1.6 - - - -
2105B CYS* 4.1 5.4 - - + -
2154B ILE* 4.2 13.2 - - + -
2188B VAL 3.0 15.0 + - - +
2189B ILE* 3.1 9.2 + - + +
2191B ALA* 1.3 76.3 - - - +
2193B ASP* 1.3 62.8 + - - +
2195B LYS* 3.1 8.6 + - - +
2196B VAL* 3.0 22.2 + - - +
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Residues in contact with ASP2193 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A TYR* 3.2 25.6 - - + +
67A ASP* 4.1 6.0 + - - +
68A ARG* 2.8 77.5 + - - +
69A LEU* 3.3 21.7 + - + +
2189B ILE 2.8 19.5 + - - +
2190B GLY* 3.6 6.0 - - - +
2192B VAL* 1.3 74.1 - - - +
2194B SER* 1.3 61.1 + - - +
2196B VAL* 3.2 4.0 + - - +
2197B ALA 3.2 6.8 + - - -
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Residues in contact with SER2194 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A ARG* 4.1 1.0 + - - +
1183A SO4 2.9 37.3 + - - -
2190B GLY 3.0 18.9 + - - -
2191B ALA* 3.7 7.6 - - - -
2192B VAL 3.3 0.2 - - - -
2193B ASP* 1.3 77.2 + - - +
2195B LYS* 1.3 61.6 - - - +
2197B ALA* 3.1 13.9 + - - +
2198B SER* 3.1 13.6 + - - -
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Residues in contact with LYS2195 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2098B LYS 5.4 2.5 - - - +
2099B LYS* 6.5 0.4 - - - -
2102B GLY* 3.8 28.0 - - - +
2103B LYS 5.8 0.2 - - - +
2191B ALA 3.0 15.2 + - - +
2192B VAL 3.1 8.7 + - - +
2194B SER* 1.3 73.1 - - - +
2196B VAL* 1.3 65.0 + - - +
2198B SER* 3.3 18.9 + - - +
2199B TYR* 3.1 49.3 + - + -
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Residues in contact with VAL2196 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A ARG* 3.7 27.1 - - + +
69A LEU* 3.9 11.9 - - + -
72A LEU* 5.0 7.0 - - + -
2102B GLY 4.5 1.1 - - - +
2105B CYS* 3.7 25.4 - - + +
2106B GLY* 3.6 29.6 - - - +
2192B VAL 3.0 18.7 + - - +
2193B ASP 3.5 7.9 - - - +
2194B SER 3.2 0.2 - - - -
2195B LYS* 1.3 75.5 - - - +
2197B ALA* 1.3 59.2 + - - +
2199B TYR* 3.2 2.3 + - - +
2200B GLU* 2.9 38.1 + - + +
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Residues in contact with ALA2197 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A ARG* 3.5 40.5 - - + +
1183A SO4 4.3 3.6 - - - +
2193B ASP 3.2 4.0 + - - -
2194B SER 3.1 11.7 + - - +
2196B VAL* 1.3 77.8 - - - +
2198B SER* 1.3 62.1 + - - +
2200B GLU* 3.3 14.6 + - - +
2201B LYS* 3.1 32.7 + - + +
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Residues in contact with SER2198 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2194B SER 3.1 11.9 + - - -
2195B LYS* 3.4 27.7 + - - +
2196B VAL 3.3 0.2 - - - -
2197B ALA* 1.3 77.4 - - - +
2199B TYR* 1.3 56.4 + - - +
2201B LYS* 3.2 9.3 + - - +
2202B LYS* 2.9 27.4 + - - +
2235B LYS* 4.1 24.1 + - - +
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Residues in contact with TYR2199 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2102B GLY 3.4 17.9 - - - -
2103B LYS* 3.9 31.8 - - + +
2106B GLY* 3.3 38.4 - - - +
2107B GLN* 5.5 3.1 - - + -
2110B GLN* 5.1 7.4 - - - -
2195B LYS* 3.1 48.3 + - + -
2196B VAL 3.2 6.0 + - - +
2198B SER* 1.3 73.1 - - - +
2200B GLU* 1.3 61.7 + - - +
2202B LYS* 3.8 27.1 - - + +
2203B VAL* 2.9 36.9 + - + +
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Residues in contact with GLU2200 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A ARG* 3.7 31.3 + - - +
71A PRO* 6.0 0.5 - - - +
2196B VAL* 2.9 25.0 + - + +
2197B ALA* 3.3 16.0 + - - +
2199B TYR* 1.3 74.8 - - - +
2201B LYS* 1.3 65.1 + - + +
2203B VAL* 3.9 4.5 - - - +
2204B ARG* 3.0 30.5 + - - +
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Residues in contact with LYS2201 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2197B ALA* 3.1 24.6 + - - +
2198B SER* 3.5 9.6 - - - +
2199B TYR 3.2 0.2 - - - -
2200B GLU* 1.3 81.1 + - + +
2202B LYS* 1.3 60.1 + - - +
2204B ARG* 3.3 1.2 + - + -
2205B LEU* 2.9 30.6 + - - +
2235B LYS* 4.7 7.6 - - - +
2236B LEU* 3.5 43.4 - - + +
2237B VAL* 3.3 25.2 + - - +
2238B ARG* 4.9 6.7 - - - +
2239B ASP* 5.6 3.0 + - - -
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Residues in contact with LYS2202 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2198B SER 2.9 15.6 + - - +
2199B TYR* 3.8 28.1 - - + +
2200B GLU 3.4 0.2 - - - -
2201B LYS* 1.3 74.7 - - - +
2203B VAL* 1.3 67.2 + - + +
2205B LEU* 3.3 12.3 + - + +
2206B ASN* 3.0 23.0 + - + +
2236B LEU 6.2 0.4 - - - +
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Residues in contact with VAL2203 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2106B GLY 5.6 0.2 - - - +
2110B GLN* 3.6 37.0 - - + +
2199B TYR* 2.9 25.2 + - + +
2200B GLU* 4.0 4.9 - - - +
2202B LYS* 1.3 78.2 - - + +
2204B ARG* 1.3 62.1 + - - +
2206B ASN* 3.4 9.3 + - + +
2207B GLU* 3.1 34.0 + - + +
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Residues in contact with ARG2204 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2200B GLU 3.0 19.9 + - - +
2201B LYS* 3.6 5.4 - - + +
2202B LYS 3.2 0.2 - - - -
2203B VAL* 1.3 75.0 - - - +
2205B LEU* 1.3 63.7 + - - +
2207B GLU* 3.0 51.1 + - - +
2208B ILE* 3.2 28.4 + - + +
2236B LEU* 3.7 11.7 - - + -
2239B ASP* 2.7 42.5 + - - +
2255B GLN* 4.0 12.7 - - - +
2273B TYR* 4.5 10.7 + - - -
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Residues in contact with LEU2205 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2201B LYS 2.9 16.5 + - - +
2202B LYS* 3.6 9.9 - - + +
2204B ARG* 1.3 76.0 - - - +
2206B ASN* 1.3 57.5 + - - +
2208B ILE* 3.2 16.3 + - + +
2209B TYR* 2.8 28.1 + - + +
2231B LEU* 3.7 44.0 - - + +
2232B LYS* 5.4 2.0 - - + -
2234B LYS* 3.0 34.5 - - + +
2236B LEU* 3.9 17.9 - - + +
2257B VAL* 5.2 3.6 - - + -
2259B LEU* 4.2 11.7 - - + -
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Residues in contact with ASN2206 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2202B LYS* 3.0 15.1 + - + +
2203B VAL* 3.5 12.7 + - - +
2205B LEU* 1.3 73.2 - - - +
2207B GLU* 1.3 65.5 + - - +
2209B TYR* 3.6 23.6 - - - -
2210B THR* 3.1 32.3 + - - +
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Residues in contact with GLU2207 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2203B VAL* 3.1 30.3 + - + +
2204B ARG* 3.0 46.0 + - - +
2206B ASN* 1.3 75.2 - - - +
2208B ILE* 1.3 61.7 + - - +
2210B THR* 3.2 14.9 + - - -
2211B LYS* 3.2 15.6 + - - +
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Residues in contact with ILE2208 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2204B ARG* 3.2 48.8 + - + +
2205B LEU* 3.5 16.8 - - + +
2207B GLU* 1.3 74.6 - - - +
2209B TYR* 1.3 60.9 + - - +
2211B LYS* 3.0 8.2 + - - +
2212B THR* 2.8 32.9 + - - +
2231B LEU* 4.7 7.0 - - + -
2236B LEU* 4.8 2.5 - - + -
2239B ASP* 4.2 17.0 - - + +
2255B GLN* 6.5 0.2 - - + -
2257B VAL* 4.6 18.4 - - + -
2266B LEU* 3.5 31.6 - - + -
2273B TYR* 4.0 12.8 - - + -
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Residues in contact with TYR2209 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2205B LEU* 2.8 23.3 + - + +
2206B ASN* 3.6 15.5 - - - +
2208B ILE* 1.3 73.7 - - - +
2210B THR* 1.3 86.8 + - + +
2212B THR* 3.1 26.3 + - - +
2228B LYS* 3.3 56.2 - - + +
2229B GLU* 2.9 29.1 + - - +
2231B LEU* 4.6 15.4 - - + +
2232B LYS* 4.1 22.9 - - + +
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Residues in contact with THR2210 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2206B ASN* 3.1 27.8 + - - +
2207B GLU* 3.2 8.5 + - - -
2209B TYR* 1.3 93.0 - - + +
2211B LYS* 1.3 63.5 + - - +
2212B THR 3.0 12.3 - - - +
2213B ASP* 5.0 2.3 - - - +
2228B LYS* 3.5 11.5 + - - +
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Residues in contact with LYS2211 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2207B GLU 3.2 15.9 + - - +
2208B ILE* 3.0 5.9 + - - +
2210B THR* 1.3 79.8 + - - +
2212B THR* 1.3 63.9 + - - +
2213B ASP* 4.7 0.2 - - - +
2268B GLU* 3.0 39.9 + - - +
2271B GLN 4.3 13.7 - - - +
2272B LYS* 3.3 19.3 - - - +
2273B TYR* 3.0 59.2 + - + +
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Residues in contact with THR2212 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2208B ILE 2.8 15.1 + - - -
2209B TYR* 3.1 12.5 - - - +
2210B THR 3.0 4.2 - - - +
2211B LYS* 1.3 74.0 - - - +
2213B ASP* 1.3 67.0 + - - +
2216B SER* 5.0 4.0 - - - -
2228B LYS* 2.8 48.2 + - + +
2231B LEU* 4.2 8.4 - - + +
2266B LEU* 4.0 11.3 - - + +
2273B TYR* 3.4 30.9 - - - +
2274B ILE* 5.1 0.7 - - - -
2275B PHE* 4.6 17.5 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il