Contacts of the helix formed by residues 1167 - 1234 (chain D) in PDB entry 4DHX
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU1167 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166D GLU* 1.3 83.4 - - + +
1168D SER* 1.3 67.2 + - - +
1170D GLY* 3.4 1.6 + - - -
1171D LEU* 3.0 23.0 + - + +
12E MET* 4.2 24.2 - - + -
13E ARG* 4.1 30.3 - - + +
16E ILE* 3.8 44.0 - - + -
95E LEU* 5.0 8.3 - - + -
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Residues in contact with SER1168 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166D GLU 3.3 13.9 + - - -
1167D LEU* 1.3 77.5 + - - +
1169D GLN* 1.3 65.3 + - - -
1171D LEU* 3.0 7.2 + - - +
1172D ALA* 2.8 26.5 + - - +
88E LEU* 4.0 8.3 - - - -
91E ILE* 4.1 10.0 - - - +
92E ARG* 3.4 39.0 + - - -
95E LEU* 4.1 22.5 - - - +
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Residues in contact with GLN1169 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166D GLU* 3.8 17.4 + - - +
1167D LEU 3.3 0.4 - - - -
1168D SER* 1.3 80.7 + - - +
1170D GLY* 1.3 64.3 + - - +
1172D ALA* 2.9 5.4 + - - +
1173D VAL* 2.9 39.1 + - + +
88E LEU* 3.0 42.6 - - - +
92E ARG* 3.9 5.5 + - - -
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Residues in contact with GLY1170 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166D GLU 3.3 9.7 + - - -
1167D LEU 3.4 4.0 + - - -
1168D SER 3.3 0.4 - - - -
1169D GLN* 1.3 79.2 - - - +
1171D LEU* 1.3 56.2 + - - +
1173D VAL* 4.1 5.6 - - - +
1174D GLU* 3.2 31.4 + - - +
13E ARG* 3.8 20.9 - - - -
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Residues in contact with LEU1171 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1167D LEU* 3.0 14.6 + - + +
1168D SER* 3.0 11.3 + - - +
1170D GLY* 1.3 77.4 - - - +
1172D ALA* 1.3 59.9 + - - +
1174D GLU* 3.9 10.7 - - - +
1175D LEU* 2.8 39.3 + - + +
13E ARG* 4.7 2.0 - - + +
16E ILE* 3.1 38.4 - - + -
17E ASN* 3.6 20.2 - - - +
20E LEU* 4.3 27.6 - - + -
91E ILE* 4.3 22.0 - - + -
95E LEU* 5.1 8.5 - - + -
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Residues in contact with ALA1172 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1168D SER 2.8 12.3 + - - +
1169D GLN* 3.4 11.7 - - - +
1171D LEU* 1.3 78.3 - - - +
1173D VAL* 1.3 57.8 + - + +
1175D LEU* 4.6 0.4 - - - -
1176D MET* 2.9 32.6 + - - +
84E LYS 5.5 1.8 - - - +
87E LEU* 3.6 12.4 - - + +
88E LEU* 4.1 18.6 - - + -
91E ILE* 3.6 23.5 - - + +
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Residues in contact with VAL1173 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1169D GLN* 2.9 29.2 + - + +
1170D GLY* 4.2 5.2 - - - +
1172D ALA* 1.3 74.6 - - + +
1174D GLU* 1.3 66.6 - - - +
1176D MET* 3.8 4.2 - - - +
1177D GLU* 3.0 27.4 + - + +
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Residues in contact with GLU1174 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1170D GLY 3.2 19.2 + - - +
1171D LEU* 3.9 13.8 - - + +
1173D VAL* 1.3 80.2 - - - +
1175D LEU* 1.3 64.0 + - - +
1177D GLU* 3.6 5.3 - - - +
1178D ARG* 3.2 34.5 + - + +
13E ARG* 5.3 10.0 + - - +
17E ASN* 4.3 22.2 + - - +
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Residues in contact with LEU1175 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1171D LEU* 2.8 24.2 + - + +
1172D ALA* 4.0 2.7 - - - +
1174D GLU* 1.3 75.2 - - - +
1176D MET* 1.3 66.4 + - - +
1178D ARG* 3.3 4.1 + - + +
1179D VAL* 3.0 48.3 + - + +
20E LEU* 4.7 12.6 - - + -
26E ARG* 4.0 36.1 - - + +
29E LEU* 3.8 40.4 - - + -
33E LEU* 4.9 4.0 - - + -
87E LEU* 4.1 12.8 - - + -
91E ILE* 4.8 3.8 - - + -
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Residues in contact with MET1176 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1172D ALA 2.9 19.5 + - - +
1173D VAL* 3.8 4.9 - - - +
1175D LEU* 1.3 76.0 - - - +
1177D GLU* 1.3 53.9 + - - +
1179D VAL* 3.8 0.7 - - - +
1180D MET* 2.8 44.3 + - + +
33E LEU* 4.0 27.4 - - + -
37E LEU* 5.2 7.2 - - + -
79E VAL* 4.4 27.8 - - + -
83E VAL* 4.0 24.9 - - + -
84E LYS* 3.5 44.0 - - + -
87E LEU* 4.1 7.1 - - + +
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Residues in contact with GLU1177 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1173D VAL* 3.0 21.2 + - + +
1174D GLU* 3.6 7.4 - - - +
1176D MET* 1.3 79.0 - - - +
1178D ARG* 1.3 73.2 + - + +
1180D MET* 3.0 10.9 + - - +
1181D MET* 3.0 46.8 + - - +
76E ARG* 2.9 47.4 + - - +
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Residues in contact with ARG1178 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32C LEU* 5.0 8.9 - - - +
90C ARG* 3.5 33.3 - - - +
1174D GLU* 3.2 26.8 + - + +
1175D LEU* 3.8 6.7 - - + +
1177D GLU* 1.3 86.7 - - + +
1179D VAL* 1.3 64.5 + - + +
1181D MET* 3.3 26.5 + - - +
1182D GLU* 3.1 35.0 + - - +
26E ARG* 4.8 17.3 - - - +
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Residues in contact with VAL1179 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175D LEU* 3.0 38.8 + - + +
1176D MET* 3.8 3.4 - - - +
1178D ARG* 1.3 75.7 - - + +
1180D MET* 1.3 63.5 + - - +
1182D GLU* 3.1 13.1 + - - +
1183D PHE* 3.1 56.6 + - + -
26E ARG* 6.2 1.3 - - - +
30E LYS* 3.7 31.0 - - + +
33E LEU* 4.0 20.6 - - + -
37E LEU* 5.6 0.7 - - + -
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Residues in contact with MET1180 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1176D MET* 2.8 33.4 + - + +
1177D GLU* 3.4 17.9 - - - +
1179D VAL* 1.3 74.2 - - - +
1181D MET* 1.3 66.6 + - + +
1183D PHE* 3.2 12.5 + - - +
1184D VAL* 3.0 40.0 + - - +
37E LEU* 5.7 2.2 - - + -
42E TRP* 4.1 21.3 - - + -
72E THR* 4.4 9.0 - - + +
75E GLY 4.4 5.4 - - - +
76E ARG* 3.5 56.1 - - + +
79E VAL* 4.6 7.2 - - + -
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Residues in contact with MET1181 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97C GLN* 5.5 9.4 - - - +
1177D GLU* 3.0 39.6 + - - +
1178D ARG* 3.7 27.6 - - - +
1180D MET* 1.3 85.0 - - + +
1182D GLU* 1.3 66.0 + - + +
1184D VAL* 3.8 5.0 - - - +
1185D ARG* 3.0 25.6 + - - +
68E VAL* 5.7 7.1 - - + +
72E THR* 4.8 11.7 - - + +
76E ARG* 4.6 8.3 - - - +
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Residues in contact with GLU1182 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1178D ARG* 3.1 22.8 + - - +
1179D VAL* 3.1 13.6 + - - +
1181D MET* 1.3 77.7 - - - +
1183D PHE* 1.3 61.7 + - + +
1185D ARG* 3.8 4.8 - - - +
1186D GLU* 3.0 31.0 + - - +
26E ARG* 4.3 16.3 + - - -
30E LYS* 3.4 28.0 + - - +
34E ARG* 5.9 0.2 + - - -
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Residues in contact with PHE1183 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1179D VAL* 3.1 41.5 + - + -
1180D MET* 3.2 7.6 + - - +
1182D GLU* 1.3 78.7 - - + +
1184D VAL* 1.3 59.7 + - - +
1186D GLU* 3.3 7.5 + - - +
1187D THR* 2.8 35.2 + - - +
30E LYS* 3.6 14.8 - - + -
34E ARG* 3.3 77.6 - - + -
37E LEU* 3.9 24.0 - - + -
42E TRP* 4.0 17.9 - + + -
43E LYS* 4.8 4.8 + - + +
46E LEU* 4.4 0.9 - - + -
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Residues in contact with VAL1184 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1180D MET* 3.0 32.7 + - - +
1181D MET* 3.8 5.8 - - - +
1182D GLU 3.3 0.2 - - - -
1183D PHE* 1.3 77.2 - - - +
1185D ARG* 1.3 57.0 - - - +
1187D THR* 3.3 1.2 + - - -
1188D CYS* 2.9 35.2 + - - -
42E TRP* 4.2 5.6 - - + -
46E LEU* 3.9 28.7 - - + -
68E VAL* 4.3 7.6 - - + -
71E ILE* 3.8 25.8 - - + +
72E THR* 3.6 26.0 - - - +
75E GLY* 5.2 1.1 - - - -
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Residues in contact with ARG1185 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93C THR* 3.9 16.8 + - - +
97C GLN* 3.6 17.7 + - - -
1181D MET 3.0 18.1 + - - +
1182D GLU* 3.8 5.2 - - - +
1184D VAL* 1.3 77.3 - - - +
1186D GLU* 1.3 61.9 - - - +
1188D CYS* 3.3 1.7 + - - +
1189D SER* 2.8 34.5 + - - +
64E VAL* 4.3 17.7 - - - +
65E ASP* 2.8 33.8 + - - -
68E VAL* 3.9 22.7 - - + +
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Residues in contact with GLU1186 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182D GLU 3.0 17.5 + - - +
1183D PHE* 3.5 10.1 - - - +
1185D ARG* 1.3 78.7 - - - +
1187D THR* 1.3 63.0 + - - +
1189D SER* 3.4 6.2 + - - -
1190D GLN* 3.1 54.0 + - + +
34E ARG* 3.1 38.3 + - - -
43E LYS* 4.3 8.8 + - - +
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Residues in contact with THR1187 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183D PHE 2.8 25.5 + - - -
1184D VAL 3.7 3.6 - - - -
1186D GLU* 1.3 72.0 - - - +
1188D CYS* 1.3 62.8 + - - +
1190D GLN* 3.2 6.9 + - - +
1191D GLU* 2.9 35.0 + - + +
43E LYS* 3.2 24.6 + - - +
46E LEU* 3.5 31.1 - - + +
47E LYS* 4.0 32.8 - - + +
50E CYS* 5.0 2.9 - - + -
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Residues in contact with CYS1188 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1184D VAL* 2.9 24.4 + - - +
1185D ARG 3.8 3.8 - - - +
1187D THR* 1.3 76.4 - - - +
1189D SER* 1.3 63.1 + - - +
1192D LEU* 3.1 27.9 + - - +
50E CYS* 3.9 10.5 - - - -
64E VAL* 4.1 12.8 - - + -
67E LEU* 3.6 31.1 - - + +
68E VAL* 3.7 15.7 - - + -
71E ILE* 3.3 31.0 - - - -
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Residues in contact with SER1189 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1185D ARG* 2.8 27.8 + - - +
1186D GLU* 3.5 7.9 - - - -
1187D THR 3.2 0.2 - - - -
1188D CYS* 1.3 77.5 - - - +
1190D GLN* 1.3 59.4 + - - +
1192D LEU* 4.2 0.7 - - - +
1193D LYS* 3.0 32.5 + - - +
64E VAL* 3.7 25.6 - - - +
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Residues in contact with GLN1190 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186D GLU* 3.1 46.2 + - - +
1187D THR* 3.6 7.9 - - - +
1189D SER* 1.3 78.3 - - - +
1191D GLU* 1.3 67.6 + - - +
1193D LYS* 3.4 7.7 + - - +
1194D ASN* 3.0 34.9 + - - +
43E LYS* 4.4 8.2 + - - +
47E LYS* 3.8 16.5 + - - -
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Residues in contact with GLU1191 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1187D THR* 2.9 31.6 + - + +
1188D CYS 4.2 0.2 - - - +
1190D GLN* 1.3 76.4 - - - +
1192D LEU* 1.3 58.8 + - - +
1194D ASN* 3.2 16.1 + - - +
1195D ALA* 2.9 28.2 + - - +
47E LYS* 2.6 40.8 + - + +
50E CYS* 3.8 26.9 - - + -
51E LYS* 3.3 31.4 - - + +
54E ILE* 4.3 8.5 - - + +
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Residues in contact with LEU1192 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1188D CYS 3.1 19.7 + - - +
1189D SER 4.2 1.1 - - - +
1191D GLU* 1.3 73.9 - - - +
1193D LYS* 1.3 61.2 + - - +
1195D ALA* 3.0 3.5 + - - +
1196D VAL* 2.9 40.0 + - + +
54E ILE* 4.3 9.9 - - + +
59E LEU* 3.7 26.5 - - + +
62E VAL* 4.3 16.6 - - + +
63E THR* 3.8 11.4 - - - -
64E VAL* 3.6 39.5 - - + +
67E LEU* 3.8 15.3 - - + -
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Residues in contact with LYS1193 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1189D SER 3.0 22.2 + - - +
1190D GLN* 3.6 7.4 - - - +
1192D LEU* 1.3 77.4 - - - +
1194D ASN* 1.3 65.8 + - - +
1196D VAL* 3.0 26.9 - - + +
1197D GLU* 3.0 46.2 + - + +
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Residues in contact with ASN1194 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1190D GLN* 3.0 26.3 + - - +
1191D GLU* 3.5 19.1 + - - +
1193D LYS* 1.3 85.2 + - - +
1195D ALA* 1.3 57.2 + - - +
1197D GLU* 3.6 12.4 + - - +
1198D THR* 3.1 32.2 + - - -
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Residues in contact with ALA1195 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1191D GLU 2.9 13.1 + - - +
1192D LEU* 3.0 10.1 + - - +
1194D ASN* 1.3 76.0 - - - +
1196D VAL* 1.3 60.0 + - - +
1198D THR* 3.4 5.1 + - - -
1199D ASP* 2.9 31.2 + - - +
54E ILE* 4.3 14.6 - - + -
59E LEU* 3.6 25.5 - - + +
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Residues in contact with VAL1196 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1192D LEU* 2.9 28.6 + - + +
1193D LYS* 3.0 26.0 - - + +
1195D ALA* 1.3 75.7 - - - +
1197D GLU* 1.3 61.6 + - + +
1199D ASP* 3.7 5.8 - - - +
1200D GLN* 2.8 39.2 + - + +
59E LEU* 4.2 20.6 - - + +
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Residues in contact with GLU1197 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1193D LYS* 3.0 51.3 + - + +
1194D ASN* 3.8 11.2 - - - +
1196D VAL* 1.3 83.5 - - + +
1198D THR* 1.3 65.9 + - - +
1200D GLN* 3.3 7.8 + - - +
1201D ARG* 3.2 37.4 + - - +
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Residues in contact with THR1198 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1194D ASN 3.1 17.3 + - - -
1195D ALA* 3.8 5.8 - - - -
1197D GLU* 1.3 76.9 - - - +
1199D ASP* 1.3 64.2 + - - +
1201D ARG* 3.2 34.3 + - - +
1202D VAL* 3.1 27.7 + - + +
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Residues in contact with ASP1199 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1195D ALA 2.9 17.9 + - - +
1196D VAL* 3.7 4.4 - - - +
1198D THR* 1.3 78.3 - - - +
1200D GLN* 1.3 60.8 + - - +
1202D VAL* 2.9 20.0 + - - +
1203D ARG* 2.7 63.4 + - - +
1206D ARG* 5.5 2.3 + - - -
59E LEU* 3.4 27.9 - - + +
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Residues in contact with GLN1200 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1196D VAL* 2.8 26.9 + - + +
1197D GLU* 3.6 7.6 - - - +
1198D THR 3.2 0.2 - - - -
1199D ASP* 1.3 77.6 + - - +
1201D ARG* 1.3 57.7 + - + +
1203D ARG* 3.4 23.2 + - - +
1204D VAL* 3.0 40.3 + - + +
12F MET* 4.0 17.0 - - - +
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Residues in contact with ARG1201 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1197D GLU* 3.2 29.1 + - - +
1198D THR* 3.2 36.0 + - - +
1199D ASP 3.2 0.8 - - - -
1200D GLN* 1.3 74.5 - - + +
1202D VAL* 1.3 65.1 + - + +
1204D VAL* 3.5 6.1 + - - +
1205D ALA* 3.1 25.3 + - - +
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Residues in contact with VAL1202 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1198D THR* 3.1 23.8 + - + +
1199D ASP* 2.9 19.4 + - - +
1201D ARG* 1.3 77.8 - - + +
1203D ARG* 1.3 57.0 + - - +
1205D ALA* 3.4 4.7 + - - +
1206D ARG* 3.0 51.2 + - + +
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Residues in contact with ARG1203 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1199D ASP* 2.7 47.1 + - - +
1200D GLN* 3.8 24.6 - - - +
1202D VAL* 1.3 72.2 - - - +
1204D VAL* 1.3 58.1 + - - +
1206D ARG* 3.3 30.1 + - - +
1207D CYS* 2.8 38.3 + - - -
59E LEU* 5.9 2.2 - - - +
60E GLU* 5.4 12.7 - - - +
9F ASP* 4.3 24.4 + - - +
12F MET* 3.7 22.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL1204 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1200D GLN* 3.0 28.1 + - + +
1201D ARG* 3.9 6.7 - - - +
1202D VAL 3.3 0.2 - - - -
1203D ARG* 1.3 75.9 - - - +
1205D ALA* 1.3 62.6 + - - +
1207D CYS* 3.5 1.6 + - - +
1208D CYS* 3.1 34.9 + - - -
12F MET* 3.8 22.7 - - + -
16F ILE* 4.9 3.5 - - + +
92F ARG* 5.3 3.4 - - - +
95F LEU* 6.0 2.5 - - + -
----------------------------------------------------------
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Residues in contact with ALA1205 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1201D ARG 3.1 18.1 + - - +
1202D VAL* 3.8 4.9 - - - +
1204D VAL* 1.3 76.7 - - - +
1206D ARG* 1.3 63.2 + - - +
1208D CYS* 3.4 3.5 + - - +
1209D GLU* 3.2 31.0 + - - +
88F LEU* 5.2 0.2 - - - +
92F ARG* 3.3 32.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG1206 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1199D ASP* 5.5 2.4 + - - -
1202D VAL* 3.0 38.8 + - + +
1203D ARG* 3.6 38.9 - - - +
1205D ALA* 1.3 77.6 - - - +
1207D CYS* 1.3 64.8 + - - +
1209D GLU* 3.3 17.1 + - - +
1210D ASP* 3.1 34.2 + - - +
9F ASP 5.3 5.9 - - - +
13F ARG* 6.2 0.9 - - - +
----------------------------------------------------------
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Residues in contact with CYS1207 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1203D ARG* 2.8 25.1 + - - +
1204D VAL 4.0 1.8 - - - +
1206D ARG* 1.3 78.3 - - - +
1208D CYS* 1.3 61.6 + - - +
1210D ASP* 3.3 8.8 + - - +
1211D VAL* 2.9 35.6 + - - +
9F ASP 3.6 36.3 - - - -
12F MET* 3.6 19.5 - - - -
13F ARG* 3.8 15.0 - - + -
16F ILE* 3.9 18.2 - - + -
----------------------------------------------------------
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Residues in contact with CYS1208 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1204D VAL* 3.1 34.5 + - - +
1205D ALA 3.6 5.4 - - - +
1207D CYS* 1.3 77.6 - - - +
1209D GLU* 1.3 56.3 + - - +
1211D VAL* 3.9 5.5 - - - +
1212D CYS* 2.9 30.5 + - - +
16F ILE* 4.4 4.3 - - - -
88F LEU* 3.6 5.5 - - + +
91F ILE* 4.5 7.6 - - + +
92F ARG* 3.9 33.2 - - + -
95F LEU* 3.4 32.5 - - - -
----------------------------------------------------------
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Residues in contact with GLU1209 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1205D ALA* 3.2 16.8 + - - +
1206D ARG* 3.5 15.6 - - - +
1207D CYS 3.2 0.2 - - - -
1208D CYS* 1.3 78.2 - - - +
1210D ASP* 1.3 65.2 + - - +
1212D CYS* 3.4 2.5 + - - +
1213D ALA* 3.0 25.1 + - - +
88F LEU* 3.7 32.1 - - + +
92F ARG* 6.1 0.2 - - - -
----------------------------------------------------------
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Residues in contact with ASP1210 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1206D ARG* 3.1 29.2 + - - +
1207D CYS* 3.6 4.9 - - - +
1209D GLU* 1.3 80.4 - - - +
1211D VAL* 1.3 56.5 + - - +
1213D ALA* 3.5 6.4 + - - +
1214D HIS* 3.0 27.5 + - - +
13F ARG* 3.4 40.7 + - - -
----------------------------------------------------------
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Residues in contact with VAL1211 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1207D CYS 2.9 20.3 + - - +
1208D CYS* 3.9 4.7 - - - +
1210D ASP* 1.3 74.6 - - - +
1212D CYS* 1.3 67.6 + - - +
1214D HIS* 3.0 6.5 + - - +
1215D LEU* 2.8 38.3 + - + +
13F ARG* 3.9 27.4 - - + +
16F ILE* 3.9 22.7 - - + -
17F ASN* 3.4 25.6 - - - +
20F LEU* 3.7 22.0 - - + -
91F ILE* 4.7 3.8 - - + -
----------------------------------------------------------
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Residues in contact with CYS1212 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1208D CYS 2.9 18.5 + - - +
1209D GLU* 3.6 5.2 - - - +
1211D VAL* 1.3 77.5 - - - +
1213D ALA* 1.3 57.5 + - - +
1215D LEU* 3.2 3.0 + - - +
1216D VAL* 2.9 41.1 + - - +
84F LYS* 3.7 13.9 - - - -
87F LEU* 4.0 12.3 - - - +
88F LEU* 3.6 37.9 - - + -
91F ILE* 3.6 20.2 - - + +
----------------------------------------------------------
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Residues in contact with ALA1213 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1209D GLU 3.0 17.2 + - - +
1210D ASP* 3.7 6.7 - - - +
1212D CYS* 1.3 77.1 - - - +
1214D HIS* 1.3 56.5 - - - +
1216D VAL* 3.8 4.9 - - - +
1217D ASP* 2.8 42.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS1214 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27B GLU* 5.9 5.8 - - + -
31B GLU* 3.3 35.2 + - - -
1210D ASP 3.0 15.6 + - - +
1211D VAL* 3.3 9.6 - - - +
1213D ALA* 1.3 77.6 - - - +
1215D LEU* 1.3 73.7 + - + +
1217D ASP* 3.7 5.9 - - - +
1218D LEU* 3.0 42.0 + - + +
17F ASN* 4.0 12.1 - - - +
26F ARG* 4.8 1.3 - - - -
----------------------------------------------------------
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Residues in contact with LEU1215 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1211D VAL* 2.8 21.2 + - + +
1212D CYS* 3.7 4.0 - - - +
1214D HIS* 1.3 84.9 - - + +
1216D VAL* 1.3 59.5 + - + +
1218D LEU* 3.2 6.2 + - - +
1219D PHE* 2.8 60.7 + - + -
17F ASN* 3.5 24.2 - - - +
20F LEU* 3.9 17.3 - - + -
26F ARG* 4.6 19.5 - - + +
29F LEU* 3.9 28.7 - - + -
87F LEU* 5.9 2.9 - - + -
91F ILE* 4.1 11.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL1216 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1212D CYS* 2.9 29.7 + - - +
1213D ALA* 3.8 5.8 - - - +
1215D LEU* 1.3 75.6 - - - +
1217D ASP* 1.3 64.6 + - - +
1219D PHE* 3.2 2.3 + - - +
1220D LEU* 2.8 42.0 + - + +
33F LEU* 4.1 19.4 - - + +
79F VAL* 4.9 7.9 - - + -
84F LYS* 4.7 30.3 - - + -
87F LEU* 3.8 26.9 - - + -
----------------------------------------------------------
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Residues in contact with ASP1217 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1213D ALA* 2.8 25.8 + - - +
1214D HIS* 3.7 6.4 - - - +
1216D VAL* 1.3 81.9 - - - +
1218D LEU* 1.3 62.1 + - - +
1220D LEU* 3.2 18.7 + - - +
1221D VAL* 3.2 20.1 + - - +
76F ARG* 6.2 4.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU1218 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28B ARG* 3.7 38.9 - - + +
31B GLU* 4.0 10.8 - - - +
1214D HIS* 3.0 34.1 + - + +
1215D LEU* 3.6 5.4 - - - +
1217D ASP* 1.3 76.2 - - - +
1219D PHE* 1.3 86.2 + - + +
1221D VAL* 3.4 21.2 + - - +
1222D GLU* 3.8 8.7 + - - +
26F ARG* 3.5 28.0 - - - +
----------------------------------------------------------
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Residues in contact with PHE1219 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1215D LEU* 2.8 46.0 + - + +
1216D VAL* 4.5 0.2 - - - -
1218D LEU* 1.3 92.2 - - + +
1220D LEU* 1.3 64.5 + - - +
1222D GLU* 3.1 38.9 - - - +
1223D GLU* 3.3 10.3 + - + +
26F ARG* 3.4 39.0 - - + -
27F GLU* 5.7 0.9 - - - -
29F LEU* 4.2 7.2 - - + -
30F LYS* 3.6 42.4 - - + +
33F LEU* 3.7 30.5 - - + -
87F LEU* 5.4 2.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU1220 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1216D VAL* 2.8 27.0 + - + +
1217D ASP* 3.2 11.2 + - - +
1219D PHE* 1.3 76.7 - - - +
1221D VAL* 1.3 64.5 + - - +
1223D GLU* 3.4 2.4 + - + +
1224D ILE* 2.9 42.4 + - + +
33F LEU* 5.5 2.5 - - + -
37F LEU* 3.8 17.5 - - + -
42F TRP* 3.7 19.1 - - + -
75F GLY 4.2 0.4 - - - +
76F ARG* 3.7 33.9 - - + +
79F VAL* 3.7 34.5 - - + -
----------------------------------------------------------
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Residues in contact with VAL1221 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23B THR* 3.9 22.7 - - - +
1217D ASP 3.2 16.3 + - - +
1218D LEU* 3.5 12.3 - - - +
1219D PHE 3.2 0.4 - - - -
1220D LEU* 1.3 78.9 - - + +
1222D GLU* 1.3 61.7 + - - +
1224D ILE* 3.9 6.3 - - - +
1225D PHE* 3.1 24.1 + - + +
68F VAL* 5.8 3.0 - - + +
76F ARG* 5.7 7.6 - - - +
----------------------------------------------------------
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Residues in contact with GLU1222 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1218D LEU* 3.8 7.4 + - - +
1219D PHE* 3.1 29.8 + - - +
1220D LEU 3.2 0.4 - - - -
1221D VAL* 1.3 81.5 - - - +
1223D GLU* 1.3 80.2 + - - +
1225D PHE* 3.3 6.0 + - - +
1226D GLN* 3.0 39.3 + - + +
30F LYS* 2.9 47.6 + - - +
34F ARG* 5.4 0.7 - - - +
----------------------------------------------------------
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Residues in contact with GLU1223 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1219D PHE* 3.3 17.3 + - + +
1220D LEU* 4.1 5.2 - - + +
1222D GLU* 1.3 96.6 - - - +
1224D ILE* 1.3 61.5 + - - +
1226D GLN* 3.5 6.0 + - - +
1227D THR* 2.8 34.2 + - - -
30F LYS* 5.2 1.7 - - - +
33F LEU* 6.5 1.1 - - + -
34F ARG* 2.9 66.2 + - + +
37F LEU* 5.2 8.7 - - + -
38F ILE* 5.3 2.1 - - - +
42F TRP* 4.2 21.3 - - + -
43F LYS* 4.8 5.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE1224 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1220D LEU* 2.9 38.6 + - + +
1221D VAL* 3.9 5.4 - - - +
1223D GLU* 1.3 76.2 - - - +
1225D PHE* 1.3 63.6 + - - +
1227D THR* 3.6 1.7 + - - -
1228D ALA* 3.2 22.9 + - - +
42F TRP* 3.9 17.5 - - + -
46F LEU* 4.1 10.3 - - + -
68F VAL* 4.3 11.0 - - + -
71F ILE* 3.9 26.6 - - + +
72F THR* 3.9 42.8 - - + +
75F GLY* 4.2 9.2 - - - -
76F ARG* 4.5 2.0 - - + +
----------------------------------------------------------
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Residues in contact with PHE1225 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B GLN* 3.4 46.4 - - + -
98B HIS* 3.5 29.2 - + - -
1221D VAL* 3.1 18.6 + - + +
1222D GLU* 3.6 6.5 - - - +
1224D ILE* 1.3 77.0 - - - +
1226D GLN* 1.3 76.2 + - - +
1228D ALA* 3.4 2.8 + - - +
1229D LYS* 2.9 48.3 + - + +
64F VAL* 3.4 28.3 - - + -
65F ASP* 3.7 7.9 - - - -
68F VAL* 3.9 19.0 - - + +
----------------------------------------------------------
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Residues in contact with GLN1226 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B GLN* 4.5 9.1 + - - -
1222D GLU* 3.0 26.2 + - + +
1223D GLU* 3.9 14.1 - - - +
1224D ILE 3.4 0.2 - - - -
1225D PHE* 1.3 98.5 - - - +
1227D THR* 1.3 63.3 + - - +
1229D LYS* 3.4 14.9 + - - +
1230D GLU* 3.0 46.9 + - - +
34F ARG* 5.0 12.3 - - - +
43F LYS* 5.1 1.8 - - - +
----------------------------------------------------------
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Residues in contact with THR1227 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1223D GLU* 2.8 22.3 + - - +
1224D ILE 3.9 4.0 - - - -
1225D PHE 3.3 0.2 - - - -
1226D GLN* 1.3 76.0 - - - +
1228D ALA* 1.3 55.3 + - - +
1230D GLU* 3.9 3.0 - - - +
1231D THR* 2.7 38.9 + - - +
42F TRP* 4.5 2.8 - - - -
43F LYS* 3.6 27.8 - - + +
46F LEU* 3.9 31.8 - - + +
47F LYS* 3.3 34.3 - - + +
50F CYS* 4.4 3.4 - - - -
----------------------------------------------------------
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Residues in contact with ALA1228 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1224D ILE 3.2 15.8 + - - +
1225D PHE 3.7 3.6 - - - +
1227D THR* 1.3 79.5 - - - +
1229D LYS* 1.3 57.3 + - - +
1231D THR* 3.3 1.9 + - - -
1232D LEU* 2.9 33.1 + - - +
50F CYS* 4.2 5.1 - - - -
64F VAL* 4.3 5.2 - - + +
67F LEU* 3.8 32.5 - - + +
68F VAL* 4.0 18.2 - - + -
71F ILE* 4.1 6.3 - - + -
----------------------------------------------------------
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Residues in contact with LYS1229 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B GLN* 4.7 21.1 + - - +
1225D PHE* 2.9 34.5 + - + +
1226D GLN* 3.7 17.0 + - - +
1227D THR 3.4 0.2 - - - -
1228D ALA* 1.3 76.9 - - - +
1230D GLU* 1.3 64.6 + - + +
1232D LEU* 3.3 15.0 + - - +
1233D GLN* 3.4 12.6 + - - +
64F VAL* 4.1 18.1 - - + +
----------------------------------------------------------
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Residues in contact with GLU1230 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1226D GLN* 3.0 33.5 + - - +
1227D THR* 3.9 2.9 - - - +
1229D LYS* 1.3 75.5 - - + +
1231D THR* 1.3 66.9 + - - +
1233D GLN* 3.2 15.7 + - - +
1234D GLU* 3.4 11.1 + - - +
34F ARG* 4.8 5.4 + - - -
43F LYS* 3.5 31.0 + - - -
47F LYS* 5.3 5.5 - - + +
----------------------------------------------------------
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Residues in contact with THR1231 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1227D THR* 2.7 22.5 + - - +
1228D ALA 3.7 3.4 - - - -
1230D GLU* 1.3 76.9 - - - +
1232D LEU* 1.3 63.4 + - - +
1234D GLU* 3.1 23.9 + - - +
47F LYS* 3.6 26.8 - - - +
50F CYS* 3.6 27.9 - - + +
51F LYS* 4.0 27.0 + - + +
54F ILE* 3.8 17.1 - - + +
59F LEU* 5.5 0.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU1232 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1228D ALA 2.9 16.0 + - - +
1229D LYS* 3.6 7.4 - - - +
1230D GLU 3.2 0.4 - - - -
1231D THR* 1.3 76.6 - - - +
1233D GLN* 1.3 60.8 + - - +
1234D GLU 3.4 1.0 - - - -
54F ILE* 3.7 23.8 - - + -
59F LEU* 3.7 31.1 - - + +
62F VAL* 3.8 30.1 - - + +
63F THR* 3.5 7.2 - - - +
64F VAL* 3.4 39.5 - - + +
67F LEU* 4.1 5.6 - - + -
----------------------------------------------------------
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Residues in contact with GLN1233 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1229D LYS 3.4 7.7 + - - +
1230D GLU* 3.2 11.3 + - - +
1231D THR 3.1 0.6 - - - -
1232D LEU* 1.3 78.6 - - - +
1234D GLU* 1.3 61.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU1234 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1230D GLU 3.4 8.1 + - - +
1231D THR* 3.1 19.1 + - - +
1232D LEU 3.4 1.8 - - - -
1233D GLN* 1.3 83.8 - - - +
51F LYS* 4.2 22.0 + - - +
59F LEU* 5.6 9.3 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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