Contacts of the helix formed by residues 97 - 132 (chain A) in PDB entry 4DYL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLY 97 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     93A  ASP      2.9    12.4    +      -       -      -
     95A  ASN      3.4     1.4    -      -       -      -
     96A  SER*     1.3    76.1    +      -       -      +
     98A  PRO*     1.3    72.9    -      -       -      +
     99A  LEU      3.4     0.7    -      -       -      -
    100A  SER*     2.6    19.8    +      -       -      -
    101A  LYS*     3.0    23.7    +      -       -      +
    229A  GLU*     4.5     7.4    -      -       -      -
    233A  ILE*     5.2     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with PRO 98 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34A  MET*     4.3     6.5    -      -       -      -
     93A  ASP      3.7     0.2    -      -       -      +
     94A  LEU*     3.5    32.3    -      -       +      +
     97A  GLY*     1.3    84.9    -      -       -      +
     99A  LEU*     1.3    55.0    +      -       -      +
    101A  LYS*     4.2     6.1    -      -       +      -
    102A  LEU*     2.8    30.7    +      -       -      +
    226A  ILE*     3.8    32.0    -      -       +      +
    229A  GLU*     3.8    16.4    -      -       +      +
    230A  TYR      4.0    13.5    -      -       -      +
    233A  ILE*     3.6    21.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 99 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31A  ARG*     4.5    22.2    -      -       +      +
     34A  MET*     4.3    12.9    -      -       +      -
     35A  ALA*     3.8    34.3    -      -       +      +
     38A  VAL*     4.0    12.1    -      -       +      -
     94A  LEU*     3.2    18.5    +      -       +      +
     95A  ASN*     3.8    27.1    -      -       -      +
     98A  PRO*     1.3    76.4    -      -       -      +
    100A  SER*     1.3    60.0    +      -       -      +
    102A  LEU*     3.5     6.7    +      -       -      +
    103A  SER*     3.0    40.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 100 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     95A  ASN      3.6     9.7    +      -       -      -
     96A  SER*     2.7    21.8    +      -       -      -
     97A  GLY      2.6    20.6    +      -       -      -
     99A  LEU*     1.3    76.9    -      -       -      +
    101A  LYS*     1.3    64.4    +      -       -      +
    103A  SER*     3.1     9.7    +      -       -      +
    104A  LEU*     3.0    22.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 101 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     97A  GLY*     3.0    22.8    +      -       -      +
     98A  PRO*     3.8     4.9    -      -       +      +
    100A  SER*     1.3    76.9    +      -       -      +
    102A  LEU*     1.3    64.0    +      -       -      +
    104A  LEU*     3.2     9.0    +      -       -      +
    105A  LEU*     2.9    22.3    +      -       -      +
    222A  ILE*     5.9     1.5    -      -       +      +
    226A  ILE*     4.2    17.9    -      -       +      -
    229A  GLU*     2.7    38.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 102 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27A  LEU*     3.8    38.1    -      -       +      +
     30A  MET*     3.6    19.7    -      -       +      +
     31A  ARG*     3.3    44.4    -      -       +      +
     34A  MET*     4.2    13.5    -      -       +      -
     98A  PRO      2.8    17.7    +      -       -      +
     99A  LEU*     3.6     5.2    -      -       -      +
    101A  LYS*     1.3    76.0    -      -       -      +
    103A  SER*     1.3    62.4    +      -       -      +
    105A  LEU*     3.1     9.2    +      -       +      +
    106A  ILE*     3.0    27.0    +      -       +      +
    223A  LEU*     4.2    13.0    -      -       +      -
    226A  ILE*     3.9    11.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 103 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31A  ARG*     3.7    18.5    -      -       -      +
     99A  LEU*     3.0    22.0    +      -       -      +
    100A  SER*     3.1    11.3    +      -       -      -
    102A  LEU*     1.3    74.1    -      -       -      +
    104A  LEU*     1.3    62.7    +      -       -      +
    106A  ILE*     3.2    13.5    +      -       -      +
    107A  ARG*     3.1    22.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 104 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100A  SER      3.0    12.3    +      -       -      +
    101A  LYS*     3.2     9.6    +      -       -      +
    103A  SER*     1.3    76.3    -      -       -      +
    105A  LEU*     1.3    58.1    +      -       -      +
    107A  ARG*     3.5    10.2    +      -       +      -
    108A  GLU*     3.0    52.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 105 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27A  LEU*     3.9    23.6    -      -       +      -
    101A  LYS      2.9    14.1    +      -       -      +
    102A  LEU*     3.1    11.6    +      -       +      +
    104A  LEU*     1.3    75.8    -      -       -      +
    106A  ILE*     1.3    57.7    +      -       -      +
    108A  GLU*     3.5     6.6    +      -       +      +
    109A  ARG*     3.1    31.8    +      -       -      +
    219A  MET*     3.8    39.3    -      -       +      +
    222A  ILE*     4.3    21.1    -      -       +      -
    223A  LEU*     4.2    19.5    -      -       +      -
    226A  ILE*     3.8    23.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 106 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24A  LEU*     3.5    14.7    -      -       +      +
     27A  LEU*     3.7    45.3    -      -       +      +
     28A  GLU*     4.0    21.1    -      -       +      +
     31A  ARG*     4.2    19.5    -      -       +      -
    102A  LEU*     3.0    18.2    +      -       +      +
    103A  SER*     3.5     8.1    -      -       -      +
    105A  LEU*     1.3    73.7    -      -       -      +
    107A  ARG*     1.3    66.2    +      -       -      +
    109A  ARG*     3.1     7.0    +      -       -      +
    110A  GLN*     3.0    49.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 107 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    103A  SER      3.1    13.4    +      -       -      +
    104A  LEU*     3.7    17.0    -      -       +      +
    106A  ILE*     1.3    76.6    -      -       -      +
    108A  GLU*     1.3    61.2    +      -       -      +
    110A  GLN*     3.3    16.3    +      -       -      +
    111A  GLN*     3.2    21.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 108 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    104A  LEU*     3.0    43.2    +      -       +      +
    105A  LEU*     3.8    10.3    -      -       +      +
    106A  ILE      3.3     0.2    -      -       -      -
    107A  ARG*     1.3    75.2    -      -       -      +
    109A  ARG*     1.3    59.3    +      -       +      +
    111A  GLN*     3.4     9.3    +      -       -      +
    112A  LEU*     2.8    29.6    +      -       -      +
    219A  MET*     5.5     4.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 109 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20A  GLN*     4.7     4.8    +      -       -      +
     23A  GLU*     2.7    45.7    +      -       -      +
     24A  LEU*     3.8    21.3    -      -       +      +
     27A  LEU*     3.3    36.0    -      -       -      +
    105A  LEU*     3.1    20.5    +      -       -      +
    106A  ILE      3.1     8.4    +      -       -      +
    108A  GLU*     1.3    77.8    -      -       -      +
    110A  GLN*     1.3    58.1    +      -       -      +
    112A  LEU*     4.2     5.6    -      -       +      -
    113A  ARG*     2.9    32.6    +      -       -      +
    216A  HIS*     3.7    16.1    +      -       +      +
    219A  MET*     3.6    51.9    -      -       +      +
    220A  ALA*     5.7     0.8    -      -       -      +
    223A  LEU*     6.2     1.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 110 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24A  LEU*     3.7    19.2    -      -       +      +
    106A  ILE*     3.0    37.1    +      -       -      +
    107A  ARG*     3.6    17.6    -      -       -      +
    108A  GLU      3.2     0.2    -      -       -      -
    109A  ARG*     1.3    78.6    -      -       -      +
    111A  GLN*     1.3    61.0    +      -       -      +
    113A  ARG*     3.7    13.9    -      -       -      +
    114A  LYS*     3.7    15.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 111 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    107A  ARG      3.2    10.5    +      -       -      +
    108A  GLU*     3.8    12.3    -      -       -      +
    110A  GLN*     1.3    79.4    -      -       -      +
    112A  LEU*     1.3    62.9    +      -       -      +
    114A  LYS*     3.2     9.5    +      -       -      +
    115A  THR*     3.1    26.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 112 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20A  GLN*     4.5     2.7    -      -       -      +
    108A  GLU      2.8    19.3    +      -       -      +
    109A  ARG*     3.8     8.1    -      -       +      +
    111A  GLN*     1.3    72.8    -      -       -      +
    113A  ARG*     1.3    60.6    +      -       -      +
    115A  THR*     3.0     7.5    +      -       -      +
    116A  TYR*     2.8    35.0    +      -       +      +
    212A  LEU*     4.7    18.8    -      -       +      -
    215A  LEU*     4.3    24.7    -      -       +      -
    216A  HIS*     5.3     4.9    -      -       +      -
    219A  MET*     5.5     2.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 113 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17A  GLN*     5.7     1.1    -      -       -      +
     20A  GLN*     3.7    35.3    +      -       +      +
     21A  GLU*     4.0    22.4    -      -       -      +
     24A  LEU*     4.8     8.5    -      -       +      -
    109A  ARG      2.9    18.5    +      -       -      +
    110A  GLN*     3.7     9.6    -      -       -      +
    112A  LEU*     1.3    74.4    -      -       -      +
    114A  LYS*     1.3    61.6    +      -       +      +
    116A  TYR*     4.1     1.9    -      -       -      +
    117A  SER*     3.3    24.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 114 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    110A  GLN      3.7    12.5    +      -       -      +
    111A  GLN*     3.2    12.6    +      -       -      +
    112A  LEU      3.1     0.6    -      -       -      -
    113A  ARG*     1.3    78.3    -      -       +      +
    115A  THR*     1.3    67.9    +      -       -      +
    117A  SER*     3.1    17.7    +      -       -      -
    118A  GLU*     3.1    24.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 115 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    111A  GLN*     3.1    14.5    +      -       -      +
    112A  LEU*     3.0    12.1    +      -       -      -
    114A  LYS*     1.3    73.9    -      -       -      +
    116A  TYR*     1.3    66.2    +      -       -      +
    118A  GLU*     3.3    14.0    +      -       +      +
    119A  GLN*     3.0    48.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 116 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13A  HIS*     2.9    39.9    +      +       -      -
     16A  LEU*     3.4    24.8    -      -       +      +
     17A  GLN*     4.7     2.2    -      -       +      -
     20A  GLN*     3.6    31.9    -      -       -      +
    112A  LEU*     2.8    21.6    +      -       +      +
    113A  ARG      4.1     0.7    -      -       -      +
    115A  THR*     1.3    73.9    -      -       -      +
    117A  SER*     1.3    68.1    +      -       -      +
    119A  GLN*     3.3     8.8    +      -       -      +
    120A  TRP*     2.9    25.8    +      +       -      +
    208A  LEU*     4.0    34.1    -      -       +      -
    209A  LEU*     3.5    14.1    -      -       +      +
    212A  LEU*     3.7    38.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 117 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13A  HIS*     4.2     8.9    +      -       -      -
     17A  GLN*     3.6    27.1    -      -       -      -
    113A  ARG      3.3    13.0    +      -       -      -
    114A  LYS*     3.1    15.8    +      -       -      -
    116A  TYR*     1.3    85.7    -      -       -      +
    118A  GLU*     1.3    56.1    +      -       -      +
    120A  TRP*     3.4     2.6    +      -       -      +
    121A  GLN*     3.1    26.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 118 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114A  LYS*     3.1    33.4    +      -       -      +
    115A  THR*     3.5    13.2    +      -       +      +
    117A  SER*     1.3    76.1    +      -       -      +
    119A  GLN*     1.3    62.4    -      -       +      +
    121A  GLN*     3.2     7.1    +      -       -      +
    122A  GLN*     2.9    51.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 119 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    115A  THR*     3.0    39.5    +      -       +      +
    116A  TYR*     3.6     7.7    -      -       -      +
    118A  GLU*     1.3    76.9    -      -       +      +
    120A  TRP*     1.3    62.8    +      -       -      +
    122A  GLN*     3.6    16.6    +      -       -      +
    123A  LEU*     3.2    29.1    +      -       +      +
    208A  LEU*     3.0    32.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with TRP 120 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9A  SER      4.4     4.1    +      -       -      +
     10A  PRO*     4.0    28.7    -      -       +      -
     13A  HIS*     3.4    66.2    +      +       +      +
    116A  TYR*     2.9    26.8    +      +       +      +
    117A  SER      3.6     2.5    -      -       -      +
    118A  GLU      3.2     0.2    -      -       -      -
    119A  GLN*     1.3    76.2    -      -       -      +
    121A  GLN*     1.3    68.1    +      -       +      +
    123A  LEU*     3.3     6.2    +      -       -      +
    124A  GLN*     3.1    57.3    +      -       +      +
    205A  LEU*     3.3    32.7    -      -       +      +
    208A  LEU*     3.8    12.1    -      -       +      +
    209A  LEU*     5.3     1.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 121 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    117A  SER      3.1    15.1    +      -       -      +
    118A  GLU*     3.2    11.0    +      -       +      +
    120A  TRP*     1.3    83.7    -      -       +      +
    122A  GLN*     1.3    53.3    +      -       +      +
    124A  GLN*     3.0     8.2    +      -       -      +
    125A  GLN*     2.8    34.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 122 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    118A  GLU*     2.9    37.1    +      -       +      +
    119A  GLN*     3.6    19.2    -      -       -      +
    121A  GLN*     1.3    75.4    -      -       +      +
    123A  LEU*     1.3    58.6    +      -       +      +
    125A  GLN*     3.4     6.6    +      -       -      +
    126A  GLU*     3.0    37.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 123 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    119A  GLN*     3.2    18.4    +      -       +      +
    120A  TRP      3.7     4.7    -      -       -      +
    121A  GLN      3.2     0.2    -      -       -      -
    122A  GLN*     1.3    80.2    -      -       +      +
    124A  GLN*     1.3    63.0    +      -       +      +
    126A  GLU*     3.5     9.6    +      -       +      +
    127A  LEU      3.1    18.2    +      -       -      -
    196A  HIS*     5.0     0.4    +      -       -      +
    200A  HIS*     3.5    23.3    +      -       +      -
    204A  LEU*     3.9    60.6    -      -       +      +
    205A  LEU*     4.3     7.6    -      -       +      +
    208A  LEU*     4.1    20.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 124 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10A  PRO*     5.7     4.9    -      -       -      +
    120A  TRP*     3.1    59.1    +      -       +      +
    121A  GLN*     3.0     9.4    +      -       -      +
    123A  LEU*     1.3    76.4    -      -       -      +
    125A  GLN*     1.3    57.4    +      -       -      +
    127A  LEU*     3.3    17.6    +      -       -      +
    128A  THR*     2.9    36.9    +      -       -      +
    200A  HIS*     3.5    22.2    +      -       -      -
    205A  LEU*     5.1     4.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 125 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    121A  GLN      2.8    18.0    +      -       -      +
    122A  GLN*     3.8     8.1    -      -       -      +
    124A  GLN*     1.3    73.7    -      -       -      +
    126A  GLU*     1.3    59.1    +      -       +      +
    128A  THR*     3.3     6.1    +      -       -      -
    129A  LYS*     2.9    31.1    +      -       -      +
    133A  GLN*     4.7     0.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 126 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    122A  GLN*     3.0    24.7    +      -       +      +
    123A  LEU*     3.8    11.7    -      -       +      +
    124A  GLN      3.3     0.4    -      -       -      -
    125A  GLN*     1.3    76.6    -      -       +      +
    127A  LEU*     1.3    64.3    +      -       -      +
    129A  LYS*     3.4     5.2    +      -       -      +
    130A  THR*     3.0    29.5    +      -       -      +
    196A  HIS*     3.8    17.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 127 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    123A  LEU      3.1    16.6    +      -       -      +
    124A  GLN*     3.6    15.3    -      -       -      +
    126A  GLU*     1.3    74.8    -      -       -      +
    128A  THR*     1.3    59.7    +      -       -      +
    131A  HIS*     2.8    54.3    +      -       +      +
    196A  HIS*     3.6    25.6    +      -       +      -
    197A  HIS*     4.1    20.0    -      -       +      -
    200A  HIS*     3.7    34.8    -      -       +      +
    201A  HIS*     4.1    13.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 128 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    124A  GLN*     2.9    21.6    +      -       -      +
    125A  GLN*     3.7     6.7    -      -       -      -
    127A  LEU*     1.3    78.4    -      -       -      +
    129A  LYS*     1.3    58.1    +      -       -      +
    132A  SER*     3.1    20.5    +      -       -      +
    133A  GLN*     2.9    47.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 129 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    125A  GLN      2.9    21.6    +      -       -      +
    126A  GLU*     3.7     6.5    -      -       -      +
    127A  LEU      3.3     0.2    -      -       -      -
    128A  THR*     1.3    73.4    -      -       -      +
    130A  THR*     1.3    60.8    +      -       -      +
    133A  GLN*     3.0    17.9    +      -       +      +
    134A  ASP*     2.9    46.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 130 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    126A  GLU*     3.0    16.4    +      -       -      +
    129A  LYS*     1.3    79.3    -      -       -      +
    131A  HIS*     1.3    62.1    +      -       -      +
    134A  ASP*     3.7    19.8    +      -       +      +
    135A  ILE*     3.6    15.2    -      -       -      +
    189A  GLY      5.2     0.6    -      -       -      +
    192A  ALA*     4.4     7.0    -      -       +      +
    193A  ALA*     3.7    26.6    -      -       -      +
    196A  HIS*     3.6    31.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 131 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    127A  LEU*     2.8    39.0    +      -       +      +
    130A  THR*     1.3    73.8    -      -       -      +
    132A  SER*     1.3    62.6    +      -       -      +
    135A  ILE*     3.4    17.4    -      -       -      +
    193A  ALA*     3.7    33.2    -      -       +      +
    194A  GLN*     5.4     0.9    -      -       -      -
    196A  HIS*     5.4     0.9    -      -       +      -
    197A  HIS*     3.6    31.4    -      +       +      -
----------------------------------------------------------
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Residues in contact with SER 132 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    128A  THR*     3.1    24.4    +      -       -      +
    130A  THR      3.4     0.6    -      -       -      -
    131A  HIS*     1.3    86.5    -      -       -      +
    133A  GLN*     1.3    64.1    +      -       -      +
    134A  ASP      3.6     1.1    -      -       -      -
    135A  ILE*     3.7     3.0    -      -       -      +
    136A  GLU*     2.9    38.5    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il