Contacts of the helix formed by residues 5 - 39 (chain F) in PDB entry 4E45


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ALA 5 (chain F).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      4F  GLU*     1.3    76.0    -      -       -      +
      6F  GLU*     1.3    65.3    +      -       -      +
      8F  GLU*     3.6     7.1    +      -       -      +
      9F  GLU*     3.1    24.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 6 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      4F  GLU      3.3     6.2    -      -       -      +
      5F  ALA*     1.3    79.0    -      -       -      +
      7F  THR*     1.3    56.6    +      -       -      +
      9F  GLU*     3.5     5.8    +      -       -      +
     10F  GLN*     3.0    27.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 7 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      4F  GLU*     3.3    18.3    +      -       -      +
      5F  ALA      3.2     0.4    -      -       -      -
      6F  GLU*     1.3    76.0    -      -       -      +
      8F  GLU*     1.3    66.6    +      -       -      +
      9F  GLU      3.1     1.3    -      -       -      -
     10F  GLN*     3.3     6.0    +      -       -      +
     11F  GLN*     3.0    48.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 8 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      4F  GLU      3.0    15.8    +      -       -      +
      5F  ALA*     3.8     9.0    -      -       -      +
      7F  THR*     1.3    77.2    -      -       -      +
      9F  GLU*     1.3    57.8    +      -       -      +
     11F  GLN*     3.3     6.9    +      -       -      +
     12F  ARG*     2.9    30.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 9 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5F  ALA      3.1    15.0    +      -       -      +
      6F  GLU*     3.7     6.3    -      -       -      +
      7F  THR      3.1     0.6    -      -       -      -
      8F  GLU*     1.3    77.9    -      -       -      +
     10F  GLN*     1.3    64.1    +      -       -      +
     12F  ARG*     2.8    47.5    +      -       -      +
     13F  PHE*     3.1    24.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 10 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      6F  GLU      3.0    16.6    +      -       -      +
      7F  THR*     3.3     7.4    +      -       -      +
      9F  GLU*     1.3    76.4    -      -       -      +
     11F  GLN*     1.3    60.0    +      -       +      +
     13F  PHE*     3.6     6.8    +      -       -      +
     14F  SER*     3.1    28.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLN 11 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7F  THR*     3.0    38.7    +      -       -      +
      8F  GLU*     3.8     5.4    -      -       -      +
     10F  GLN*     1.3    78.3    -      -       +      +
     12F  ARG*     1.3    64.0    +      -       -      +
     14F  SER*     3.2     8.8    +      -       -      +
     15F  TYR*     3.0    26.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 12 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      8F  GLU      2.9    21.9    +      -       -      +
      9F  GLU*     2.8    43.8    +      -       -      +
     11F  GLN*     1.3    73.7    -      -       -      +
     13F  PHE*     1.3    76.4    +      -       -      +
     15F  TYR*     3.7     5.8    -      -       -      +
     16F  GLN*     2.9    56.4    +      -       +      +
     21G  LEU*     6.0     7.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 13 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9F  GLU*     3.1    20.7    +      -       -      +
     10F  GLN*     3.8     7.6    -      -       -      +
     11F  GLN      3.3     0.2    -      -       -      -
     12F  ARG*     1.3    95.4    -      -       -      +
     14F  SER*     1.3    61.2    +      -       -      +
     16F  GLN*     3.3    28.1    +      -       -      +
     17F  GLN*     2.9    59.4    +      -       +      +
    784J  TYR*     3.9    16.8    -      +       -      -
----------------------------------------------------------
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Residues in contact with SER 14 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10F  GLN      3.1    13.7    +      -       -      -
     11F  GLN*     3.2    14.2    +      -       -      +
     13F  PHE*     1.3    82.2    -      -       -      +
     15F  TYR*     1.3    59.7    +      -       -      +
     17F  GLN      3.4     0.3    +      -       -      -
     18F  ARG*     3.0    26.0    +      -       -      +
    784J  TYR*     3.8    30.6    -      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 15 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11F  GLN      3.0    19.3    +      -       -      +
     12F  ARG*     3.7     6.3    -      -       -      +
     14F  SER*     1.3    75.3    +      -       -      +
     16F  GLN*     1.3    66.2    +      -       -      +
     18F  ARG*     3.0    39.5    +      -       -      +
     19F  LEU*     3.0    35.7    +      -       +      +
     17G  ARG*     2.8    53.4    +      -       -      +
     21G  LEU*     4.2    26.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 16 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12F  ARG*     2.9    38.7    +      -       +      +
     13F  PHE*     3.4    24.6    -      -       -      +
     15F  TYR*     1.3    77.0    -      -       -      +
     17F  GLN*     1.3    81.3    +      -       -      +
     19F  LEU*     3.2     6.9    +      -       -      +
     20F  LYS*     2.9    49.9    +      -       -      +
     55F  PHE*     4.1    17.4    -      -       +      -
     21G  LEU*     5.1     9.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 17 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13F  PHE*     2.9    53.5    +      -       +      +
     14F  SER      3.8     0.2    -      -       -      +
     16F  GLN*     1.3   106.0    +      -       -      +
     18F  ARG*     1.3    57.3    +      -       -      +
     20F  LYS*     3.6    14.4    +      -       -      +
     21F  ALA*     2.9    29.6    +      -       -      +
    780J  GLU*     3.3    30.7    +      -       -      +
    781J  VAL*     3.9    16.3    -      -       -      +
    784J  TYR*     3.5    32.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 18 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14F  SER      3.0    13.6    +      -       -      +
     15F  TYR*     3.0    29.7    +      -       -      +
     17F  GLN*     1.3    77.4    -      -       -      +
     19F  LEU*     1.3    66.6    +      -       +      +
     21F  ALA*     3.3     4.3    +      -       -      +
     22F  ALA*     3.1    21.3    +      -       -      +
     17G  ARG*     3.8    37.5    -      -       -      +
    784J  TYR*     3.7    20.9    -      -       +      +
    785J  LEU*     5.0     0.9    -      -       -      -
    786J  GLN*     3.1    40.8    +      -       +      +
    788J  GLU*     4.5     7.7    +      -       -      +
    789J  ASP*     2.9    39.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 19 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15F  TYR*     3.0    46.0    +      -       +      +
     16F  GLN      3.8     5.4    -      -       -      +
     18F  ARG*     1.3    84.6    -      -       +      +
     20F  LYS*     1.3    63.5    +      -       -      +
     22F  ALA*     3.2     2.8    +      -       -      +
     23F  VAL*     2.9    28.6    +      -       -      +
     55F  PHE*     4.1     4.3    -      -       +      -
     14G  LEU*     3.7    24.3    -      -       +      +
     17G  ARG*     4.0    36.3    -      -       +      +
     18G  LEU*     3.9    16.6    -      -       +      -
     21G  LEU*     3.9    21.8    -      -       +      -
    789J  ASP*     4.9     0.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 20 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16F  GLN*     2.9    48.4    +      -       -      +
     17F  GLN*     3.6    19.4    +      -       -      +
     19F  LEU*     1.3    75.7    -      -       -      +
     21F  ALA*     1.3    57.2    +      -       -      +
     23F  VAL*     3.4     4.0    +      -       -      +
     24F  HIS*     2.8    31.1    +      -       -      +
     51F  SER*     5.2     0.5    -      -       -      -
     52F  GLU*     2.9    35.8    +      -       -      +
     55F  PHE*     3.8    36.1    -      -       +      -
    777J  TYR*     3.9    13.0    +      -       +      +
    781J  VAL*     4.1    15.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 21 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17F  GLN      2.9    15.0    +      -       -      +
     18F  ARG      3.6     3.1    -      -       -      +
     19F  LEU      3.3     0.2    -      -       -      -
     20F  LYS*     1.3    78.5    -      -       -      +
     22F  ALA*     1.3    57.9    +      -       -      +
     24F  HIS*     3.7     2.4    +      -       -      +
     25F  TYR*     3.0    27.9    +      -       -      +
    781J  VAL*     3.2    39.0    -      -       +      +
    782J  GLU*     4.8     0.9    -      -       -      +
    785J  LEU*     3.5    31.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 22 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18F  ARG      3.1    13.0    +      -       -      +
     19F  LEU      3.2     7.4    +      -       -      +
     21F  ALA*     1.3    76.4    -      -       -      +
     23F  VAL*     1.3    59.7    +      -       -      +
     25F  TYR      3.4     0.5    +      -       -      -
     26F  THR*     2.7    33.1    +      -       -      -
     14G  LEU*     3.7    20.9    -      -       +      -
    785J  LEU*     3.8     7.1    -      -       +      +
    789J  ASP*     3.8    17.3    -      -       +      +
    790J  VAL*     3.6    24.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 23 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19F  LEU      2.9    21.6    +      -       -      +
     20F  LYS*     3.7     6.1    -      -       -      +
     22F  ALA*     1.3    74.6    -      -       -      +
     24F  HIS*     1.3    57.1    +      -       -      +
     26F  THR*     3.1     2.9    +      -       -      -
     27F  VAL*     2.8    46.5    +      -       +      +
     51F  SER*     3.7    24.5    -      -       -      +
     54F  THR*     3.9    16.6    -      -       +      -
     55F  PHE*     4.1    11.9    -      -       +      +
     58F  CYS*     5.7     0.9    -      -       -      -
     10G  PHE*     4.3    14.1    -      -       +      -
     14G  LEU*     4.7     1.8    -      -       +      -
     18G  LEU*     4.0    33.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 24 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20F  LYS      2.8    18.1    +      -       -      +
     21F  ALA      3.7     4.6    +      -       -      +
     22F  ALA      3.3     0.2    -      -       -      -
     23F  VAL*     1.3    74.7    -      -       -      +
     25F  TYR*     1.3    65.4    +      -       -      +
     27F  VAL*     3.9     0.5    -      -       -      +
     28F  GLY*     3.0    20.8    +      -       -      -
     44F  LYS      5.3     1.6    +      -       -      -
     47F  ILE*     4.2    15.2    -      -       +      +
     48F  ALA*     4.1    10.9    +      -       -      +
     51F  SER*     3.3    34.1    -      -       -      +
    775J  CYS*     5.9     0.4    -      -       -      -
    777J  TYR*     3.9    20.3    -      +       +      -
    778J  GLU*     3.9    42.6    +      -       +      +
    781J  VAL*     4.0    15.2    -      -       +      +
    782J  GLU*     6.0     1.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 25 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     21F  ALA      3.0    16.6    +      -       -      +
     22F  ALA      3.6     5.2    -      -       -      +
     23F  VAL      3.3     0.2    -      -       -      -
     24F  HIS*     1.3    80.5    +      -       -      +
     26F  THR*     1.3    66.8    +      -       -      +
     28F  GLY*     3.3     2.1    +      -       -      -
     29F  CYS*     3.2    42.5    +      -       -      -
    785J  LEU*     3.9    26.0    -      -       +      -
    787J  MET*     3.9    25.1    -      -       +      +
    790J  VAL*     3.7    29.6    -      -       +      -
    791J  THR      4.4    15.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 26 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22F  ALA      2.7    20.6    +      -       -      -
     23F  VAL      3.1     4.3    +      -       -      -
     25F  TYR*     1.3    77.5    -      -       -      +
     27F  VAL*     1.3    66.9    +      -       -      +
     29F  CYS*     3.0     9.7    +      -       +      +
     30F  LEU*     2.9    26.1    +      -       +      +
      8G  SER*     5.8     0.2    -      -       -      -
      9G  GLY*     3.4    39.6    +      -       -      +
     10G  PHE*     3.8    32.7    -      -       +      +
     14G  LEU*     4.5     2.6    -      -       -      +
    790J  VAL*     3.8    14.0    -      -       -      +
    791J  THR      5.6     0.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 27 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23F  VAL*     2.8    36.5    +      -       +      +
     24F  HIS      3.9     0.2    -      -       -      +
     26F  THR*     1.3    70.3    -      -       -      +
     28F  GLY*     1.3    57.8    +      -       -      +
     30F  LEU*     3.3     2.2    +      -       -      +
     31F  CYS*     2.8    39.0    +      -       -      -
     47F  ILE*     3.9     9.0    -      -       +      +
     50F  ILE*     3.6    26.0    -      -       +      -
     51F  SER*     3.4    30.3    -      -       -      +
     54F  THR*     4.2     2.7    -      -       -      +
     10G  PHE*     4.4     3.6    -      -       +      -
     46G  VAL*     4.1    28.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 28 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24F  HIS      3.0    15.0    +      -       -      -
     25F  TYR      3.3     3.8    +      -       -      -
     27F  VAL*     1.3    78.6    -      -       -      +
     29F  CYS*     1.3    61.4    +      -       -      +
     31F  CYS*     3.4     2.1    +      -       -      +
     32F  GLU*     3.0    23.9    +      -       -      +
     47F  ILE*     4.0    21.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 29 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25F  TYR*     3.2    44.2    +      -       -      -
     26F  THR*     3.0    10.4    +      -       -      +
     28F  GLY*     1.3    75.9    -      -       -      +
     30F  LEU*     1.3    62.8    +      -       -      +
     32F  GLU*     3.2    15.2    +      -       -      +
     33F  GLU*     3.2    19.2    +      -       -      +
      8G  SER*     3.8    21.5    -      -       -      -
    791J  THR      6.0     2.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 30 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26F  THR*     2.9    26.0    +      -       +      +
     27F  VAL      3.8     3.8    -      -       -      +
     29F  CYS*     1.3    76.1    -      -       -      +
     31F  CYS*     1.3    60.4    +      -       -      +
     33F  GLU*     3.2    19.7    +      -       -      +
     34F  VAL*     3.1    25.7    +      -       -      +
      8G  SER*     3.6    28.9    -      -       -      +
      9G  GLY*     4.8     1.1    -      -       -      -
     10G  PHE*     3.9    29.6    -      -       +      -
     43G  LYS*     4.1    27.8    -      -       +      +
     46G  VAL*     4.0    26.9    -      -       +      -
     47G  VAL*     4.7     9.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with CYS 31 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27F  VAL*     2.8    43.2    +      -       -      +
     28F  GLY      4.0     2.7    -      -       -      +
     30F  LEU*     1.3    71.3    -      -       -      +
     32F  GLU*     1.3    60.7    +      -       -      +
     34F  VAL*     3.2     7.5    +      -       -      +
     35F  ALA*     2.8    29.1    +      -       -      +
     42F  PHE*     3.5    16.2    -      -       +      -
     47F  ILE*     4.2    23.6    -      -       +      -
     50F  ILE*     4.1    15.9    -      -       -      -
     46G  VAL*     4.5     7.0    -      -       -      -
     50G  ALA*     4.1    19.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 32 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28F  GLY      3.0    17.1    +      -       -      +
     29F  CYS*     3.2     7.4    +      -       -      +
     31F  CYS*     1.3    77.1    -      -       -      +
     33F  GLU*     1.3    63.0    +      -       +      +
     35F  ALA*     3.4     4.9    +      -       -      +
     36F  LEU*     3.1    40.0    +      -       +      +
     41F  GLN*     3.7    21.7    +      -       -      +
     47F  ILE*     6.0     0.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 33 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29F  CYS      3.2    11.6    +      -       -      +
     30F  LEU*     3.2    21.3    +      -       -      +
     32F  GLU*     1.3    80.0    -      -       +      +
     34F  VAL*     1.3    62.9    +      -       +      +
     36F  LEU*     3.4     9.8    +      -       +      +
     37F  ASP*     3.0    23.3    +      -       -      +
      8G  SER*     3.0    41.7    +      -       -      +
     43G  LYS*     5.2     5.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 34 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30F  LEU      3.1    15.5    +      -       -      +
     31F  CYS      3.2     6.3    +      -       -      +
     33F  GLU*     1.3    78.1    -      -       +      +
     35F  ALA*     1.3    56.4    +      -       -      +
     37F  ASP*     3.2     6.1    +      -       -      +
     38F  LYS*     2.8    40.5    +      -       +      +
     42F  PHE*     3.9    17.7    -      -       +      -
     47G  VAL*     4.1    28.0    -      -       +      -
     50G  ALA*     4.1    19.3    -      -       +      -
     51G  VAL*     3.7    25.6    -      -       +      +
     54G  VAL*     4.6     1.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 35 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31F  CYS      2.8    17.3    +      -       -      +
     32F  GLU*     3.7    11.7    -      -       -      +
     34F  VAL*     1.3    77.4    -      -       -      +
     36F  LEU*     1.3    56.0    +      -       -      +
     38F  LYS*     5.1     0.9    -      -       -      -
     39F  GLU*     2.9    23.9    +      -       -      -
     40F  MET      2.9    34.6    +      -       -      +
     41F  GLN*     3.9    24.1    +      -       -      +
     42F  PHE*     3.8    12.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 36 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32F  GLU*     3.1    31.3    +      -       +      +
     33F  GLU*     3.6    13.0    -      -       +      +
     34F  VAL      3.2     0.2    -      -       -      -
     35F  ALA*     1.3    73.9    -      -       -      +
     37F  ASP*     1.3    65.7    +      -       -      +
     38F  LYS      3.4     0.5    +      -       -      -
     39F  GLU*     3.4    16.5    +      -       -      +
     41F  GLN*     5.7     0.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 37 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33F  GLU      3.0    17.2    +      -       -      +
     34F  VAL*     3.6     6.7    -      -       -      +
     36F  LEU*     1.3    79.2    -      -       -      +
     38F  LYS*     1.3    87.2    +      -       -      +
     39F  GLU*     3.8     5.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 38 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34F  VAL*     2.8    31.3    +      -       +      +
     35F  ALA      5.1     0.2    -      -       -      -
     37F  ASP*     1.3    93.0    +      -       -      +
     39F  GLU*     1.3    72.8    +      -       -      +
     40F  MET*     3.3     5.7    +      -       -      +
     51G  VAL*     3.6    36.5    -      -       +      +
     54G  VAL*     4.0    29.8    -      -       +      -
     58G  GLN*     4.4    12.2    +      -       -      +
    711J  SER      5.4     3.1    +      -       -      -
    712J  SER*     5.8     1.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 39 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35F  ALA      2.9    11.1    +      -       -      -
     36F  LEU      3.4    13.2    +      -       -      +
     37F  ASP      3.4     4.8    -      -       -      +
     38F  LYS*     1.3    83.1    -      -       -      +
     40F  MET*     1.3    61.5    +      -       -      +
     41F  GLN*     5.6     1.3    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il