Contacts of the helix formed by residues 691 - 714 (chain B) in PDB entry 4EGA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 691 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421A HIS* 3.1 33.0 - - + +
433A ARG* 3.1 21.6 + - - +
687B LEU* 2.8 31.7 + - + +
690B THR* 1.3 79.9 - - + +
692B PRO* 1.3 67.2 - - - +
693B GLU* 3.4 10.4 + - - +
694B ARG* 3.1 29.1 + - + +
695B LEU* 3.1 16.6 + - - +
806B GOL 4.8 2.5 - - - -
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Residues in contact with PRO 692 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
687B LEU 3.4 6.5 - - - +
688B VAL* 4.1 12.6 - - - +
689B LYS 4.4 5.6 - - - +
690B THR 4.1 3.6 - - - +
691B ASP* 1.3 90.8 - - - +
693B GLU* 1.3 63.0 + - - +
695B LEU* 3.3 9.1 + - + +
696B ARG* 3.2 25.3 + - - +
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Residues in contact with GLU 693 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421A HIS* 4.8 3.3 - - - +
632B ALA* 3.6 9.3 - - + +
691B ASP* 3.2 8.9 + - - +
692B PRO* 1.3 76.7 - - - +
694B ARG* 1.3 65.3 + - - +
696B ARG* 3.2 49.6 + - - +
697B THR* 3.7 6.9 + - - -
806B GOL 2.7 43.9 + - - -
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Residues in contact with ARG 694 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424A PRO* 3.7 23.6 + - - +
430A GLU* 4.7 2.2 + - - -
433A ARG* 4.4 8.5 - - - +
633B ALA 3.9 5.9 + - - -
635B THR* 3.7 21.6 + - - +
637B GLU* 5.7 0.2 - - - +
638B ASP* 2.7 43.4 + - - -
678B TYR* 4.1 0.4 + - - -
682B MET* 3.2 33.2 - - + +
687B LEU* 4.1 15.0 - - + -
691B ASP* 3.1 31.8 + - + +
693B GLU* 1.3 76.0 - - - +
695B LEU* 1.3 64.1 + - - +
697B THR* 3.1 31.6 + - - +
698B VAL* 3.0 33.4 + - + +
806B GOL 3.7 14.1 + - - +
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Residues in contact with LEU 695 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622B ILE* 3.6 16.2 - - + +
624B VAL* 6.0 0.2 - - + -
684B PRO* 3.4 37.0 - - + +
687B LEU* 4.0 9.8 - - + +
688B VAL* 3.6 39.0 - - + +
691B ASP 3.1 12.3 + - - +
692B PRO* 3.5 12.6 - - + +
693B GLU 3.3 0.2 - - - -
694B ARG* 1.3 74.0 - - - +
696B ARG* 1.3 57.3 + - - +
698B VAL* 4.3 5.4 - - + -
699B LEU* 2.7 55.2 + - + +
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Residues in contact with ARG 696 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
629B PRO* 3.3 28.5 - - + +
630B SER* 2.6 50.3 + - - +
631B PRO* 4.0 4.1 + - - -
632B ALA* 3.9 14.5 - - - +
692B PRO 3.2 12.4 + - - +
693B GLU* 3.2 44.7 + - - +
694B ARG 3.2 0.2 - - - -
695B LEU* 1.3 77.2 - - - +
697B THR* 1.3 63.6 + - - +
699B LEU* 5.7 0.2 - - - -
700B TYR* 3.0 23.2 + - - +
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Residues in contact with THR 697 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
631B PRO* 3.9 8.9 - - + +
632B ALA* 2.9 33.5 + - - +
633B ALA 3.8 6.7 + - - +
634B TYR* 3.5 36.3 - - + -
638B ASP* 3.9 4.3 - - - +
693B GLU 3.9 1.0 + - - -
694B ARG* 3.1 30.5 + - - +
696B ARG* 1.3 76.4 - - - +
698B VAL* 1.3 64.4 + - - +
700B TYR* 3.3 2.3 + - - +
701B ILE* 3.0 27.9 + - + +
806B GOL 4.3 1.0 + - - -
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Residues in contact with VAL 698 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
678B TYR* 3.6 27.9 - - + +
679B VAL* 5.5 1.6 - - + -
682B MET* 3.6 33.2 - - + -
684B PRO* 4.7 16.8 - - + -
687B LEU* 3.9 19.3 - - + -
694B ARG* 3.0 27.7 + - + +
695B LEU* 3.1 8.0 + - + +
697B THR* 1.3 72.5 - - - +
699B LEU* 1.3 65.0 + - - +
701B ILE* 3.6 1.7 + - - +
702B THR* 2.8 32.8 + - - +
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Residues in contact with LEU 699 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
617B CYS* 3.5 39.0 - - + +
622B ILE* 4.1 13.7 - - + +
623B ASN* 3.7 39.7 - - + +
629B PRO* 3.6 19.5 - - + -
684B PRO* 6.3 0.2 - - - -
695B LEU* 2.7 35.7 + - + +
696B ARG* 5.7 0.4 - - - -
698B VAL* 1.3 70.4 - - - +
700B TYR* 1.3 62.5 + - - +
702B THR* 3.1 5.8 + - - -
703B LEU* 2.7 38.4 + - + +
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Residues in contact with TYR 700 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
628B TRP* 4.0 25.4 - + + -
629B PRO* 3.2 31.8 - - - +
631B PRO* 3.7 28.0 - - + -
634B TYR* 3.7 18.4 - - - -
696B ARG 3.0 19.1 + - - +
697B THR 3.7 3.1 - - - +
699B LEU* 1.3 77.1 - - - +
701B ILE* 1.3 67.9 + - + +
703B LEU* 3.4 2.7 + - - +
704B GLU* 2.9 27.5 + - + +
743B PHE* 4.1 16.9 - + - -
744B GLY* 3.3 31.7 + - - -
746B VAL 4.2 10.1 + - - -
748B PRO* 4.6 11.4 - - + +
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Residues in contact with ILE 701 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
634B TYR* 3.7 26.5 - - + -
638B ASP* 3.5 28.7 - - + +
641B LEU* 3.7 34.5 - - + -
642B ILE* 3.9 18.2 - - + -
645B ILE* 4.0 9.2 - - + +
675B ILE* 5.9 0.2 - - - +
678B TYR* 3.5 23.3 - - + +
697B THR* 3.0 16.9 + - + +
698B VAL 4.1 3.4 - - - +
700B TYR* 1.3 80.1 - - + +
702B THR* 1.3 65.8 + - - +
704B GLU* 3.2 5.1 + - - +
705B GLY* 2.8 21.0 + - - -
743B PHE* 4.8 2.7 - - + -
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Residues in contact with THR 702 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
613B LEU* 4.1 9.6 - - + +
616B ARG* 6.0 0.9 - - + -
617B CYS* 3.9 24.0 - - + +
675B ILE* 4.0 19.1 - - + +
678B TYR* 4.1 7.5 - - - -
679B VAL* 3.6 31.8 - - + +
698B VAL* 2.8 20.7 + - - +
699B LEU* 3.1 6.1 + - - -
701B ILE* 1.3 76.1 - - - +
703B LEU* 1.3 63.8 + - - +
705B GLY* 3.1 2.4 + - - -
706B VAL* 3.0 23.1 + - + +
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Residues in contact with LEU 703 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
617B CYS* 3.7 34.3 - - + +
618B THR* 5.0 0.4 - - + -
623B ASN* 4.0 7.2 - - - +
627B GLU 3.9 8.7 - - - +
628B TRP* 3.6 62.9 - - + +
629B PRO* 3.9 10.5 - - + -
699B LEU* 2.7 26.3 + - + +
700B TYR* 3.7 2.7 - - - +
702B THR* 1.3 73.0 - - - +
704B GLU* 1.3 63.1 + - - +
706B VAL* 3.3 2.9 + - - +
707B ARG 3.1 17.7 + - - -
728B LEU* 3.9 23.1 - - + +
752B LEU* 4.6 4.9 - - + -
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Residues in contact with GLU 704 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
628B TRP* 3.3 18.8 - - + -
645B ILE* 4.6 0.2 - - - -
700B TYR* 2.9 25.6 + - + +
701B ILE 3.8 2.9 - - - +
703B LEU* 1.3 77.1 - - - +
705B GLY* 1.3 62.3 + - - +
707B ARG* 2.9 43.9 + - - +
708B VAL* 3.1 24.8 + - + +
743B PHE* 3.5 36.5 - - + -
744B GLY* 2.6 31.3 + - - +
745B ALA 3.3 1.9 + - - -
746B VAL* 4.5 3.0 + - - +
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Residues in contact with GLY 705 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
645B ILE* 3.4 30.2 - - - +
675B ILE* 3.8 15.0 - - - -
701B ILE 2.8 11.6 + - - -
702B THR 3.1 3.6 + - - -
704B GLU* 1.3 73.7 - - - +
706B VAL* 1.3 54.2 + - - +
708B VAL* 3.4 1.0 + - - +
709B THR* 2.7 40.1 + - - +
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Residues in contact with VAL 706 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
610B LEU* 5.4 2.0 - - + -
613B LEU* 3.8 37.7 - - + +
614B VAL* 4.1 13.0 - - + +
617B CYS* 4.1 14.8 - - - -
672B LEU* 5.2 2.2 - - + -
675B ILE* 4.3 0.6 - - + +
702B THR* 3.0 15.9 + - + +
703B LEU 3.7 7.4 - - - +
705B GLY* 1.3 73.9 - - - +
707B ARG* 1.3 59.5 + - - +
709B THR* 2.8 15.7 + - - +
710B THR* 2.6 34.1 + - - +
724B ILE* 4.0 9.6 - - + -
728B LEU* 3.5 24.5 - - + -
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Residues in contact with ARG 707 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
628B TRP* 4.1 7.9 - - + -
703B LEU 3.1 12.7 + - - +
704B GLU* 2.9 36.7 + - - +
705B GLY 3.3 0.2 - - - -
706B VAL* 1.3 78.3 - - - +
708B VAL* 1.3 70.1 + - - +
710B THR* 3.6 1.8 - - - -
711B LEU* 2.8 38.4 + - - +
725B PHE* 3.9 21.2 - - + -
728B LEU* 4.0 8.9 - - + +
730B VAL* 4.1 10.3 - - + -
734B HIS 3.9 15.0 + - - -
740B ASN* 2.7 25.7 + - - +
742B GLU 2.9 28.3 + - - -
745B ALA* 3.1 15.2 - - - +
746B VAL* 3.4 27.0 - - - +
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Residues in contact with VAL 708 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
645B ILE* 4.1 34.8 - - + +
648B LEU* 4.6 5.4 - - + -
649B PRO* 4.1 20.9 - - + -
704B GLU* 3.1 20.1 + - + +
705B GLY 4.2 1.3 - - - +
706B VAL 3.3 0.4 - - - -
707B ARG* 1.3 106.2 - - - +
709B THR* 1.3 58.7 + - + +
711B LEU* 3.4 8.7 + - + +
712B LEU* 3.1 34.8 + - + +
740B ASN 4.9 0.4 - - - +
741B PHE* 4.0 12.6 - - - +
742B GLU 4.8 1.1 - - - +
743B PHE* 5.1 1.6 - - - -
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Residues in contact with THR 709 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
610B LEU* 5.2 0.7 - - - +
645B ILE* 6.0 0.7 - - + -
648B LEU* 3.9 22.9 - - + -
668B VAL* 3.6 16.7 - - + +
671B VAL* 4.1 17.5 - - + -
672B LEU* 3.4 30.6 - - + +
675B ILE* 4.3 0.4 - - + -
705B GLY* 2.7 23.3 + - - +
706B VAL* 2.8 18.5 + - - +
708B VAL* 1.3 74.8 - - + +
710B THR* 1.3 58.3 + - - -
712B LEU* 3.4 1.3 + - - -
713B LEU* 2.8 34.7 + - - +
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Residues in contact with THR 710 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
610B LEU* 4.6 5.5 - - - +
706B VAL* 2.6 28.5 + - - +
707B ARG* 3.6 3.8 - - - -
709B THR* 1.3 76.6 + - - +
711B LEU* 1.3 58.8 + - - +
713B LEU* 3.1 8.6 + - - +
714B SER* 2.8 28.9 + - - -
721B SER* 3.7 30.7 - - - +
724B ILE* 3.4 37.9 - - + +
725B PHE* 3.8 16.8 - - + -
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Residues in contact with LEU 711 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
275B VAL* 3.9 19.6 - - + +
707B ARG* 2.8 25.0 + - - +
708B VAL* 3.5 9.6 - - + +
710B THR* 1.3 76.0 - - - +
712B LEU* 1.3 63.8 + - + +
714B SER* 2.7 24.9 + - - +
715B PRO* 3.6 2.8 - - - +
725B PHE* 3.8 15.0 - - + -
734B HIS 4.4 1.8 - - - +
735B ARG* 2.8 38.4 - - - +
736B LYS* 4.4 0.2 - - - -
737B GLY 4.8 0.9 - - - +
740B ASN* 3.7 22.7 - - + +
741B PHE* 3.4 37.0 - - + -
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Residues in contact with LEU 712 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272B TYR* 4.5 11.4 - - + -
275B VAL* 6.2 0.2 - - + -
648B LEU* 3.5 36.6 - - + -
649B PRO* 3.7 17.3 - - + +
652B ALA* 3.6 24.5 - - + -
656B TYR* 2.8 28.7 + - + -
668B VAL* 4.2 13.6 - - + +
708B VAL* 3.1 19.7 + - + +
709B THR 4.0 3.6 - - - +
711B LEU* 1.3 75.8 - - + +
713B LEU* 1.3 58.2 + - - +
714B SER 3.4 0.2 - - - -
715B PRO* 3.5 4.7 - - - +
741B PHE* 4.0 39.3 - - + -
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Residues in contact with LEU 713 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
579B TYR* 5.1 1.1 - - + -
610B LEU* 4.2 17.3 - - + -
665B ILE* 4.6 12.1 - - + -
668B VAL* 3.6 28.9 - - + -
669B PHE* 3.6 33.4 - - + -
672B LEU* 4.0 10.5 - - + -
709B THR 2.8 17.6 + - - +
710B THR* 3.1 7.4 + - - +
712B LEU* 1.3 74.1 - - - +
714B SER* 1.3 59.0 + - - +
715B PRO* 3.2 4.3 - - - -
716B ILE* 2.9 45.1 + - + +
717B LEU* 3.0 24.9 + - + +
721B SER* 5.2 0.9 - - - -
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Residues in contact with SER 714 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
275B VAL* 3.5 18.4 - - - +
710B THR 2.8 11.2 + - - -
711B LEU* 2.7 24.6 + - - +
713B LEU* 1.3 78.9 - - - +
715B PRO* 1.3 64.9 - - - +
717B LEU 4.0 0.9 - - - -
718B PRO* 3.1 30.3 - - - +
721B SER* 3.4 26.0 - - - -
725B PHE* 4.8 6.3 - - - -
735B ARG 5.1 0.7 + - - -
805B GOL 3.6 11.2 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il