Contacts of the helix formed by residues 356 - 398 (chain C) in PDB entry 4FEC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 356 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51B ALA 4.4 4.7 + - - +
52B ALA 3.0 8.6 + - - -
53B THR 4.0 4.3 - - - +
54B GLY* 3.7 33.0 - - - +
74B GLY 5.2 1.2 + - - -
75B LEU* 5.5 0.2 - - - +
269B ALA* 4.9 7.8 - - + +
355C GLN* 1.3 74.2 - - - +
357C VAL* 1.3 59.1 + - - +
358C ASP* 4.3 7.8 + - - +
359C ALA* 3.0 21.3 + - - +
360C ALA* 2.7 34.9 + - - +
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Residues in contact with VAL 357 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189C LYS* 3.5 37.5 - - + +
192C LEU* 4.1 9.6 - - + -
193C THR* 3.6 32.1 - - + +
196C VAL* 4.1 24.7 - - + -
350C ALA* 4.7 3.6 - - + +
355C GLN 4.0 0.6 + - - -
356C THR* 1.3 72.2 - - - +
358C ASP* 1.3 66.0 + - - +
360C ALA* 3.4 5.2 + - - +
361C LEU* 3.0 35.5 + - + +
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Residues in contact with ASP 358 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B SER 4.2 2.0 - - - -
74B GLY* 3.4 23.4 - - - +
268B ALA* 4.8 12.8 - - + +
189C LYS* 3.3 42.6 + - - +
356C THR* 3.3 6.7 + - - +
357C VAL* 1.3 80.2 + - - +
359C ALA* 1.3 56.8 + - - +
361C LEU* 3.9 1.2 - - - +
362C ALA* 3.0 31.4 + - - +
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Residues in contact with ALA 359 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52B ALA* 3.8 20.2 - - + +
73B SER* 3.3 18.3 + - - +
74B GLY 4.2 0.6 + - - +
75B LEU* 4.1 16.4 - - + -
355C GLN* 4.1 9.4 + - + +
356C THR* 3.0 20.8 + - - +
358C ASP* 1.3 79.4 - - - +
360C ALA* 1.3 62.2 + - - +
362C ALA* 4.1 1.4 - - - +
363C ALA* 3.2 24.8 + - - +
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Residues in contact with ALA 360 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192C LEU* 5.0 1.8 - - + -
346C ALA* 3.5 38.3 - - + +
349C ASN* 4.8 0.2 - - + -
350C ALA* 4.1 14.1 - - + +
355C GLN* 3.6 21.7 + - + +
356C THR 2.7 20.9 + - - +
357C VAL* 3.7 4.0 - - - +
359C ALA* 1.3 74.0 - - - +
361C LEU* 1.3 60.9 + - - +
363C ALA* 3.4 5.7 + - - +
364C ALA 3.3 15.2 + - - -
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Residues in contact with LEU 361 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158C TRP* 6.1 0.7 - - + -
161C ILE* 5.5 6.5 - - + -
183C VAL* 3.3 42.4 - - + +
184C ASP* 3.5 20.9 - - + +
188C ALA* 3.9 7.2 - - + +
189C LYS* 3.7 38.8 - - + +
192C LEU* 3.8 21.1 - - + -
343C VAL* 6.1 3.1 - - + -
346C ALA* 4.3 11.4 - - + -
347C VAL* 6.1 1.1 - - + -
357C VAL* 3.0 25.1 + - + +
358C ASP 4.1 2.0 - - - +
360C ALA* 1.3 75.1 - - - +
362C ALA* 1.3 63.9 + - - +
364C ALA* 3.4 16.6 + - - +
365C GLN* 4.1 2.4 + - - +
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Residues in contact with ALA 362 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B GLN* 3.4 27.0 - - - +
73B SER* 3.3 29.8 - - - +
74B GLY* 4.1 2.5 - - - +
184C ASP* 4.2 15.0 - - + +
358C ASP 3.0 12.6 + - - +
359C ALA 4.1 0.2 - - - +
361C LEU* 1.3 77.0 - - - +
363C ALA* 1.3 59.4 + - - +
364C ALA 3.1 2.2 + - - -
365C GLN* 3.3 19.6 + - - +
366C THR* 4.1 4.2 + - - +
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Residues in contact with ALA 363 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B SER* 5.7 0.4 - - - +
355C GLN* 4.5 15.5 - - - +
359C ALA 3.2 16.7 + - - +
360C ALA 3.7 5.4 - - - +
361C LEU 3.3 0.2 - - - -
362C ALA* 1.3 76.2 - - - +
364C ALA* 1.3 59.7 + - - +
365C GLN 3.3 0.4 - - - -
366C THR* 3.2 13.3 + - - +
367C ASN* 3.1 32.7 + - - +
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Residues in contact with ALA 364 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183C VAL* 4.1 20.6 - - + -
342C ALA* 3.3 33.8 - - + +
343C VAL* 4.9 0.9 - - + +
346C ALA* 4.2 6.5 - - + -
360C ALA 3.3 10.5 + - - +
361C LEU 3.4 14.4 - - - +
362C ALA 3.1 0.6 - - - -
363C ALA* 1.3 77.1 - - - +
365C GLN* 1.3 59.6 + - - +
367C ASN* 4.3 2.0 - - - -
368C ALA* 3.0 27.4 + - - +
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Residues in contact with GLN 365 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72B GLN* 5.4 6.3 - - - +
181C VAL* 3.4 44.4 - - - +
183C VAL* 4.6 7.6 - - - +
184C ASP* 3.7 24.8 - - - +
361C LEU 4.1 2.4 + - - +
362C ALA 3.3 12.2 + - - +
363C ALA 3.3 0.6 - - - -
364C ALA* 1.3 79.9 - - - +
366C THR* 1.3 62.1 + - + +
368C ALA* 3.9 7.5 - - - +
369C ALA* 3.3 21.1 + - - +
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Residues in contact with THR 366 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B GLN* 4.8 13.7 - - - +
379B LYS* 5.3 22.2 - - + +
362C ALA 4.1 3.1 + - - +
363C ALA* 3.2 21.5 + - - +
365C GLN* 1.3 76.1 - - + +
367C ASN* 1.3 64.3 + - - +
369C ALA* 3.4 7.0 + - - +
370C ALA* 2.9 29.1 + - - +
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Residues in contact with ASN 367 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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379B LYS 5.4 0.2 + - - -
383B SER* 3.0 32.7 + - - +
386B SER* 5.9 2.1 - - - -
341C TYR* 3.5 20.2 - - + -
342C ALA* 4.0 15.0 - - + +
345C THR* 3.9 25.8 + - - +
363C ALA* 3.1 22.9 + - - +
364C ALA* 3.9 4.7 - - - +
365C GLN 3.4 0.2 - - - -
366C THR* 1.3 82.8 + - - +
368C ALA* 1.3 59.7 + - - +
370C ALA* 3.7 2.7 + - - +
371C MET 3.3 14.9 + - - -
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Residues in contact with ALA 368 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338C ALA* 3.3 35.8 - - + +
339C PHE* 4.9 3.1 - - - +
342C ALA* 3.7 4.2 - - + +
364C ALA 3.0 18.4 + - - +
365C GLN* 3.9 9.9 - - - +
366C THR 3.3 0.2 - - - -
367C ASN* 1.3 74.1 - - - +
369C ALA* 1.3 59.6 + - - +
371C MET 3.5 0.3 + - - -
372C ALA* 3.0 25.2 + - - +
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Residues in contact with ALA 369 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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376B LYS* 5.4 10.1 - - + +
365C GLN 3.3 15.6 + - - +
366C THR* 3.4 8.0 + - - +
368C ALA* 1.3 76.5 - - - +
370C ALA* 1.3 55.5 + - - +
372C ALA* 3.4 8.8 + - - +
373C THR* 2.8 35.3 + - - -
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Residues in contact with ALA 370 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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376B LYS* 5.4 1.1 - - - -
379B LYS* 3.4 29.6 - - + +
380B ALA* 3.7 13.8 - - - +
383B SER* 3.7 17.0 - - - -
366C THR 2.9 18.8 + - - +
367C ASN* 3.8 4.3 - - - +
368C ALA 3.3 0.2 - - - -
369C ALA* 1.3 76.9 - - - +
371C MET* 1.3 57.3 + - - +
373C THR* 3.4 8.0 + - - -
374C LEU* 3.1 31.5 + - - +
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Residues in contact with MET 371 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384B LEU* 6.5 0.2 - - - -
337C SER* 5.0 5.8 - - - +
338C ALA* 3.7 23.8 - - + +
341C TYR* 3.6 42.8 - - + -
367C ASN 3.3 5.6 + - - +
368C ALA 3.8 4.7 - - - +
369C ALA 3.3 0.4 - - - -
370C ALA* 1.3 76.1 - - - +
372C ALA* 1.3 65.9 + - - +
374C LEU* 3.3 21.0 + - - -
375C GLU* 3.1 59.1 + - + +
378C MET* 4.8 9.6 - - + -
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Residues in contact with ALA 372 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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335C GLN* 6.5 0.9 - - + -
338C ALA* 4.1 6.0 - - + +
368C ALA 3.0 15.2 + - - +
369C ALA* 3.5 12.8 - - - +
370C ALA 3.3 0.2 - - - -
371C MET* 1.3 74.3 - - - +
373C THR* 1.3 65.0 + - - +
375C GLU* 3.4 13.3 + - - +
376C LYS* 3.2 30.5 + - + +
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Residues in contact with THR 373 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376B LYS* 3.6 31.0 - - + +
377B LEU* 4.2 22.9 - - + -
380B ALA* 4.0 18.2 - - + -
369C ALA 2.8 20.5 + - - -
370C ALA* 3.4 10.2 - - - -
371C MET 3.2 0.2 - - - -
372C ALA* 1.3 77.5 - - - +
374C LEU* 1.3 63.9 + - - +
375C GLU 3.2 0.3 + - - -
376C LYS* 3.3 13.3 + - + +
377C LEU* 2.9 31.5 + - + +
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Residues in contact with LEU 374 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380B ALA* 3.9 23.8 - - + +
381B PHE* 4.7 14.8 - - + -
383B SER* 5.7 0.2 - - - -
384B LEU* 4.0 41.5 - - + +
341C TYR* 5.3 4.7 - - + +
370C ALA* 3.1 18.4 + - + +
371C MET* 3.6 26.7 - - + +
373C THR* 1.3 78.3 - - - +
375C GLU* 1.3 58.4 + - + +
377C LEU* 3.2 12.6 - - + +
378C MET* 2.9 38.3 + - + +
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Residues in contact with GLU 375 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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334C PRO 4.4 5.9 - - - +
335C GLN* 5.6 1.0 - - - -
337C SER* 3.1 34.9 + - - -
338C ALA* 4.5 5.8 - - - +
371C MET* 3.1 46.1 + - + +
372C ALA* 3.7 11.7 - - - +
373C THR 3.2 0.4 - - - -
374C LEU* 1.3 72.0 - - - +
376C LYS* 1.3 61.1 + - - +
378C MET* 3.2 23.4 + - + +
379C LYS* 2.9 46.3 + - - +
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Residues in contact with LYS 376 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369A ALA* 5.7 2.7 - - - -
370A ALA* 5.2 1.7 - - - -
373A THR* 4.3 28.0 + - + +
376B LYS* 6.0 2.0 - - - +
372C ALA* 3.2 18.7 + - + +
373C THR* 3.3 18.2 - - + +
375C GLU* 1.3 76.0 - - - +
377C LEU* 1.3 59.4 + - + +
379C LYS* 3.7 13.2 - - + +
380C ALA* 3.0 28.9 + - - +
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Residues in contact with LEU 377 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373A THR* 4.6 11.0 - - + -
377A LEU* 3.8 33.7 - - + -
377B LEU* 4.3 17.9 - - + -
380B ALA* 5.7 1.3 - - + -
381B PHE* 4.2 25.1 - - + -
373C THR* 2.9 27.7 + - + +
374C LEU* 3.2 16.2 - - + +
376C LYS* 1.3 79.2 - - - +
378C MET* 1.3 59.4 + - - +
380C ALA* 3.4 10.5 + - + +
381C PHE* 3.2 35.2 + - + -
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Residues in contact with MET 378 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371C MET* 4.8 9.4 - - + -
374C LEU* 2.9 20.8 + - + +
375C GLU* 3.3 37.2 - - + +
377C LEU* 1.3 74.2 - - - +
379C LYS* 1.3 62.1 + - - +
381C PHE* 4.1 6.2 - - - +
382C GLU* 3.4 22.2 + - - +
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Residues in contact with LYS 379 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366A THR* 3.8 25.8 - - - +
370A ALA* 3.8 5.8 - - + +
334C PRO* 5.5 8.5 - - - +
375C GLU* 2.9 33.4 + - - +
376C LYS* 3.8 11.6 - - + +
377C LEU 3.2 0.2 - - - -
378C MET* 1.3 79.3 - - - +
380C ALA* 1.3 58.9 + - - +
382C GLU* 3.6 15.9 + - - +
383C SER* 3.1 27.2 + - - -
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Residues in contact with ALA 380 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A ALA* 3.3 31.3 - - - +
373A THR* 4.0 13.2 - - + -
374A LEU* 4.2 19.3 - - + +
377A LEU* 6.2 0.4 - - + -
376C LYS 3.0 18.4 + - - +
377C LEU* 3.4 7.2 + - + +
379C LYS* 1.3 77.6 - - - +
381C PHE* 1.3 59.1 + - + +
383C SER* 3.3 4.2 - - - -
384C LEU* 3.0 24.6 + - - +
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Residues in contact with PHE 381 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374A LEU* 4.3 15.3 - - + -
377A LEU* 4.5 15.5 - - + -
377C LEU* 3.2 45.2 + - + +
378C MET* 4.6 5.8 - - - +
379C LYS 3.3 0.4 - - - -
380C ALA* 1.3 75.1 - - + +
382C GLU* 1.3 60.8 + - - +
383C SER 3.2 1.3 - - - -
384C LEU* 3.8 18.6 - - + +
385C LYS* 2.9 30.0 + - - +
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Residues in contact with GLU 382 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378C MET 3.4 19.2 + - - +
379C LYS* 3.7 16.8 - - - +
380C ALA 3.4 0.2 - - - -
381C PHE* 1.3 77.0 - - - +
383C SER* 1.3 58.2 + - - +
385C LYS* 3.8 9.8 - - + +
386C SER* 3.1 33.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 383 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341A TYR* 2.7 39.6 + - - -
367A ASN* 2.7 32.4 + - - +
370A ALA* 3.6 14.0 - - - +
371A MET* 4.8 0.5 + - - -
374A LEU* 6.0 0.9 - - - -
379C LYS 3.1 15.5 + - - -
380C ALA 3.3 9.9 - - - -
381C PHE 3.2 0.2 - - - -
382C GLU* 1.3 76.2 - - - +
384C LEU* 1.3 62.0 + - - +
386C SER* 3.6 5.0 + - - -
387C PHE* 3.2 14.7 + - - +
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Residues in contact with LEU 384 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341A TYR* 3.8 6.5 + - + +
374A LEU* 3.8 34.7 - - + +
380C ALA 3.0 14.9 + - - +
381C PHE* 3.3 20.6 + - + +
383C SER* 1.3 75.2 - - - +
385C LYS* 1.3 53.4 + - - +
387C PHE* 3.2 13.6 + - + +
388C GLN* 2.7 69.4 + - + +
----------------------------------------------------------
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Residues in contact with LYS 385 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381C PHE 2.9 17.4 + - - +
382C GLU* 3.8 10.3 - - + +
384C LEU* 1.3 75.8 - - - +
386C SER* 1.3 57.7 + - - +
388C GLN* 3.1 10.2 + - - +
389C GLN* 2.9 52.0 + - + +
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Residues in contact with SER 386 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354A ARG* 5.5 8.9 + - - +
367A ASN* 6.0 1.1 - - - -
382C GLU* 3.1 22.6 + - - +
383C SER* 3.8 6.1 - - - -
385C LYS* 1.3 76.8 - - - +
387C PHE* 1.3 57.7 + - - +
389C GLN* 3.5 18.3 + - - +
390C GLN* 3.1 27.8 + - - +
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Residues in contact with PHE 387 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341A TYR* 3.3 48.9 - + + +
344A ARG* 5.7 12.1 - - - -
345A THR* 5.0 6.5 - - - +
383C SER 3.2 4.2 + - - +
384C LEU* 3.6 16.4 - - + +
386C SER* 1.3 77.0 - - - +
388C GLN* 1.3 71.4 + - - +
390C GLN* 2.8 29.7 + - + +
391C GLN* 3.1 44.8 + - + +
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Residues in contact with GLN 388 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384C LEU* 2.7 44.1 + - + +
385C LYS* 3.4 9.7 - - - +
387C PHE* 1.3 82.8 - - - +
389C GLN* 1.3 60.1 + - - +
391C GLN* 3.4 30.2 + - - +
392C GLN* 4.2 6.2 + - - +
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Residues in contact with GLN 389 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354A ARG* 5.7 8.6 - - - +
385C LYS* 2.9 36.2 + - + +
386C SER* 3.5 25.9 + - - +
388C GLN* 1.3 74.9 - - - +
390C GLN* 1.3 63.9 + - - +
391C GLN 3.2 0.2 - - - -
392C GLN* 3.2 28.9 + - + +
393C GLN* 3.4 5.9 + - - +
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Residues in contact with GLN 390 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345A THR* 3.3 28.5 + - - +
348A ILE* 3.9 15.3 - - - +
349A ASN* 2.9 32.1 + - - +
354A ARG* 3.3 16.8 - - - +
386C SER 3.1 15.7 + - - +
387C PHE* 2.8 23.9 + - + +
389C GLN* 1.3 75.0 - - - +
391C GLN* 1.3 61.5 + - - +
393C GLN* 3.0 21.9 + - - +
394C GLN* 2.9 38.1 + - - +
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Residues in contact with GLN 391 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387C PHE* 3.1 49.1 + - + +
388C GLN* 3.4 25.8 + - - +
390C GLN* 1.3 76.4 - - - +
392C GLN* 1.3 66.8 + - - +
394C GLN* 3.7 8.4 + - - +
395C HIS* 3.4 27.3 + - + -
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Residues in contact with GLN 392 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388C GLN 4.2 4.9 - - - +
389C GLN* 3.4 24.7 - - + +
390C GLN 3.1 0.2 - - - -
391C GLN* 1.3 80.2 - - - +
393C GLN* 1.3 57.8 + - - +
394C GLN 3.1 1.8 - - - -
395C HIS* 2.8 37.2 + - - +
396C GLN* 3.0 32.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 393 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348A ILE* 3.9 8.6 - - - +
349A ASN* 4.9 0.8 + - - -
352A SER* 4.8 10.5 + - - -
354A ARG* 3.7 35.8 - - - +
389C GLN 3.4 4.4 + - - +
390C GLN* 3.0 21.5 + - - +
392C GLN* 1.3 77.2 - - - +
394C GLN* 1.3 88.6 + - - +
396C GLN* 3.9 6.6 + - - +
397C HIS* 3.2 41.9 + - + +
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Residues in contact with GLN 394 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A GLN* 4.1 20.2 - - - +
348A ILE* 3.8 17.4 - - + +
390C GLN* 2.9 44.2 + - - +
391C GLN* 3.8 10.0 - - - +
392C GLN 3.1 0.6 - - - -
393C GLN* 1.3 97.3 + - - +
395C HIS* 1.3 55.2 + - - +
397C HIS* 3.0 10.1 + - - +
398C GLN* 2.8 41.9 + - + +
----------------------------------------------------------
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Residues in contact with HIS 395 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391C GLN* 3.4 19.3 + - + -
392C GLN* 2.8 27.1 + - - +
394C GLN* 1.3 74.2 - - - +
396C GLN* 1.3 71.6 + - - +
398C GLN* 3.4 19.5 + - - +
399C HIS* 3.8 21.2 + - - +
513C ZN 3.2 32.4 - - - -
----------------------------------------------------------
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Residues in contact with GLN 396 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392C GLN* 3.0 36.1 + - - +
393C GLN* 4.1 7.0 + - - +
395C HIS* 1.3 86.1 - - - +
397C HIS* 1.3 63.9 + - - +
398C GLN 3.2 0.2 - - - -
399C HIS* 3.1 26.1 + - - +
400C GLN* 3.5 12.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS 397 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A ASP* 3.6 16.4 - - + +
352A SER* 6.1 5.1 - - - -
393C GLN* 3.2 33.1 + - + +
394C GLN* 3.0 10.8 + - - +
396C GLN* 1.3 82.9 - - - +
398C GLN* 1.3 62.9 + - - +
399C HIS 3.2 0.4 - - - -
400C GLN* 3.8 13.8 + - + +
401C GLN* 3.4 15.1 + - - +
512C ZN 2.9 36.1 - - - -
----------------------------------------------------------
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Residues in contact with GLN 398 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209A ASP* 3.5 21.6 - - - +
394C GLN* 2.8 17.6 + - + +
395C HIS* 3.5 14.8 + - - +
396C GLN 3.2 0.6 - - - -
397C HIS* 1.3 76.7 - - - +
399C HIS* 1.3 71.4 + - + +
400C GLN 3.4 0.4 - - - -
401C GLN* 5.1 3.7 - - - +
402C GLN* 3.4 23.5 + - - +
513C ZN 3.8 23.2 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il