Contacts of the helix formed by residues 407 - 481 (chain A) in PDB entry 4IM0
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 407 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405A ARG* 3.2 16.7 + - + +
406A TYR* 1.3 80.7 - - - +
408A LEU* 1.3 61.4 + - - +
409A ASP* 3.4 18.6 + - - +
410A GLY* 3.2 21.1 + - - +
411A ASP* 2.7 45.3 + - - +
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Residues in contact with LEU 408 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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406A TYR* 3.6 31.6 - - + +
407A ASP* 1.3 75.0 + - - +
409A ASP* 1.3 67.8 + - - +
411A ASP* 4.5 2.5 - - - +
412A ALA* 3.5 23.7 + - - +
566A PHE 4.6 1.2 - - - +
569A ASP* 3.1 32.8 - - + +
570A LYS* 3.8 13.3 - - - +
572A GLU 3.5 3.8 - - - +
573A ARG* 3.2 30.3 - - - +
574A ARG* 4.2 7.0 - - - +
575A LEU* 4.2 7.2 - - + -
583A HIS* 3.8 29.1 - - + +
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Residues in contact with ASP 409 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407A ASP* 3.2 13.1 - - - +
408A LEU* 1.3 80.6 - - - +
410A GLY* 1.3 64.1 + - - +
412A ALA* 4.1 1.9 - - - +
413A SER* 3.4 21.3 + - - -
570A LYS* 3.8 36.8 + - - +
573A ARG* 4.9 16.8 + - - -
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Residues in contact with GLY 410 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407A ASP* 3.2 21.5 + - - -
409A ASP* 1.3 78.0 - - - +
411A ASP* 1.3 55.1 + - - +
413A SER* 3.1 8.3 + - - -
414A MET* 2.8 36.2 + - - +
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Residues in contact with ASP 411 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
403A HIS* 4.4 1.7 - - - +
405A ARG 3.8 2.9 - - - +
406A TYR* 4.2 1.6 - - - -
407A ASP* 2.7 36.0 + - - +
408A LEU 4.5 0.4 - - - +
410A GLY* 1.3 73.9 - - - +
412A ALA* 1.3 52.2 + - - +
414A MET* 3.5 8.3 - - + +
415A ALA* 2.6 37.9 + - - +
566A PHE* 3.7 12.5 - - + -
583A HIS* 3.0 32.5 + - + +
587A LYS* 3.3 42.4 + - - +
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Residues in contact with ALA 412 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408A LEU 3.5 18.0 + - - +
409A ASP 4.1 3.4 - - - +
410A GLY 3.3 0.6 - - - -
411A ASP* 1.3 76.5 - - - +
413A SER* 1.3 61.9 + - - +
415A ALA* 3.6 1.8 + - - +
416A LYS* 3.2 22.7 + - - +
563A TYR* 3.8 8.7 - - + +
566A PHE* 3.7 36.0 - - - +
567A LYS* 4.3 6.1 - - + +
570A LYS* 4.3 13.9 - - + -
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Residues in contact with SER 413 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A ASP 3.4 11.9 + - - -
410A GLY* 3.1 12.0 + - - -
412A ALA* 1.3 78.9 - - - +
414A MET* 1.3 62.1 + - - +
416A LYS* 3.5 9.9 - - - +
417A ALA* 3.3 19.8 + - - +
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Residues in contact with MET 414 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400A PRO* 5.3 7.2 - - + -
401A LYS 4.6 14.8 - - - +
402A VAL* 4.0 31.0 - - + -
403A HIS* 5.3 2.7 - - + +
410A GLY 2.8 19.5 + - - +
411A ASP* 3.6 17.9 - - + +
413A SER* 1.3 72.7 - - - +
415A ALA* 1.3 66.9 + - - +
417A ALA* 2.9 17.1 + - - +
418A ILE* 3.0 35.4 + - + +
566A PHE* 4.8 1.1 - - + -
587A LYS* 4.1 24.0 - - + +
590A LEU* 4.3 12.6 - - + -
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Residues in contact with ALA 415 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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411A ASP 2.6 20.6 + - - +
412A ALA* 3.8 5.8 - - - +
414A MET* 1.3 72.4 - - - +
416A LYS* 1.3 59.6 + - - +
418A ILE* 3.4 1.4 - - - +
419A THR* 2.7 33.7 + - - -
563A TYR* 4.0 19.7 - - + -
566A PHE* 3.7 15.5 - - + -
590A LEU* 3.6 28.7 - - + -
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Residues in contact with LYS 416 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98A LEU 4.4 4.4 + - - -
99A GLU* 2.7 61.6 + - - +
100A GLU 5.2 2.0 - - - -
101A PRO* 4.1 10.2 - - + +
104A ALA* 5.5 7.1 - - + +
412A ALA 3.2 6.8 + - - +
413A SER* 3.5 13.9 - - - +
414A MET 3.1 0.2 - - - -
415A ALA* 1.3 80.3 - - - +
417A ALA* 1.3 56.8 + - - +
419A THR* 3.8 2.9 - - - -
420A GLY* 2.9 26.7 + - - -
563A TYR* 3.4 34.2 - - + +
567A LYS* 5.4 0.7 - - - +
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Residues in contact with ALA 417 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104A ALA* 6.3 0.7 - - - -
105A TYR* 5.3 0.2 + - - -
400A PRO* 4.5 13.2 - - + -
413A SER 3.3 9.5 + - - +
414A MET* 2.9 11.7 + - - +
416A LYS* 1.3 79.4 - - - +
418A ILE* 1.3 57.3 + - - +
420A GLY* 3.0 4.0 + - - -
421A VAL* 3.0 32.4 + - + +
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Residues in contact with ILE 418 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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399A LEU* 3.8 20.9 - - + -
400A PRO* 4.2 24.4 - - + +
402A VAL* 5.9 3.4 - - + -
414A MET* 3.0 33.2 + - - +
415A ALA* 3.4 13.5 - - - +
417A ALA* 1.3 74.2 - - - +
419A THR* 1.3 68.0 + - - +
421A VAL* 3.3 3.0 + - - +
422A VAL* 3.2 23.0 + - - +
559A MET* 3.8 5.2 - - + -
590A LEU* 4.0 12.8 - - + +
591A TYR* 4.2 22.0 - - + +
594A ALA* 3.5 31.2 - - + -
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Residues in contact with THR 419 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A PRO* 3.7 22.9 - - + -
415A ALA 2.7 24.8 + - - -
416A LYS 3.8 2.7 - - - -
418A ILE* 1.3 76.1 - - - +
420A GLY* 1.3 59.4 + - - +
422A VAL 3.3 0.7 + - - -
423A CYS* 2.9 28.9 + - - +
556A LEU* 3.8 14.7 - - + +
559A MET* 3.7 34.8 + - + +
560A THR* 3.8 24.2 - - - +
563A TYR* 4.2 2.8 - - + +
590A LEU* 4.1 2.4 - - - +
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Residues in contact with GLY 420 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A PRO* 3.4 22.0 - - - +
104A ALA* 4.1 9.9 - - - -
105A TYR* 3.5 17.9 - - - -
416A LYS 2.9 15.9 + - - -
417A ALA* 3.0 6.0 + - - -
419A THR* 1.3 78.4 - - - +
421A VAL* 1.3 59.3 + - - +
423A CYS* 3.5 3.1 + - - +
424A TYR* 3.1 16.6 + - - +
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Residues in contact with VAL 421 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A TYR* 3.8 22.7 - - - +
397A ILE* 3.7 31.4 - - + +
398A SER 3.8 20.4 - - - +
399A LEU* 3.9 17.9 - - + -
400A PRO* 4.1 12.1 - - + -
417A ALA* 3.0 19.4 + - + +
418A ILE 3.6 7.9 - - - +
419A THR 3.2 0.2 - - - -
420A GLY* 1.3 77.5 - - - +
422A VAL* 1.3 58.0 + - - +
424A TYR* 3.3 6.4 + - - +
425A ALA* 3.0 25.1 + - - +
598A MET* 4.6 5.4 - - + -
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Residues in contact with VAL 422 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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399A LEU* 4.3 8.1 - - + -
418A ILE 3.2 13.9 + - - +
419A THR 3.8 5.8 - - - +
421A VAL* 1.3 74.6 - - - +
423A CYS* 1.3 58.8 + - - +
425A ALA* 3.2 10.1 + - + +
426A CYS* 2.9 26.7 + - + +
552A LEU* 4.8 5.2 - - + +
556A LEU* 3.6 25.8 - - + +
559A MET* 3.6 28.0 - - + -
594A ALA* 4.0 21.5 - - + +
597A ALA* 4.0 19.5 - - + -
598A MET* 4.6 3.6 - - - -
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Residues in contact with CYS 423 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101A PRO* 4.0 13.2 - - - +
102A SER* 3.6 38.6 - - - +
419A THR* 2.9 16.9 + - - +
420A GLY 3.6 6.1 - - - +
422A VAL* 1.3 75.0 - - - +
424A TYR* 1.3 58.5 + - - +
426A CYS* 3.0 9.0 + - - +
427A ARG* 2.8 29.2 + - - +
556A LEU* 3.5 35.9 - - - -
560A THR* 5.5 1.1 - - - -
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Residues in contact with TYR 424 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A TYR* 3.9 25.8 - + + -
265A VAL 4.4 0.9 + - - -
266A SER* 3.6 18.3 - - - -
394A TYR* 3.6 8.5 - + - +
395A GLU* 2.8 54.0 + - + +
397A ILE* 3.8 19.7 - - + -
420A GLY 3.1 10.6 + - - +
421A VAL* 3.4 9.9 - - - +
423A CYS* 1.3 77.9 - - - +
425A ALA* 1.3 65.9 + - + +
427A ARG* 3.2 45.5 + - - +
428A ILE* 3.0 45.0 + - + +
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Residues in contact with ALA 425 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421A VAL 3.0 13.8 + - - +
422A VAL* 3.4 10.3 - - + +
424A TYR* 1.3 81.8 - - + +
426A CYS* 1.3 58.3 + - - +
428A ILE* 3.5 0.4 + - - -
429A ALA* 2.9 24.9 + - - +
552A LEU* 5.1 4.5 - - + -
597A ALA* 6.4 0.4 - - + -
598A MET* 3.8 26.5 - - + -
601A PHE* 3.3 37.6 - - + -
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Residues in contact with CYS 426 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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422A VAL* 2.9 13.9 + - + +
423A CYS* 3.0 13.2 + - - +
425A ALA* 1.3 75.6 - - - +
427A ARG* 1.3 65.7 + - - +
429A ALA* 3.3 6.5 + - - +
430A SER* 3.0 22.7 + - - -
549A VAL* 4.0 29.2 - - - +
552A LEU* 4.1 19.9 - - + +
553A GLN* 3.8 26.2 - - - -
556A LEU* 4.9 6.3 - - + -
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Residues in contact with ARG 427 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105A TYR* 4.3 8.5 + - - +
106A GLY 5.9 0.2 + - - -
265A VAL 4.7 1.4 + - - -
266A SER 3.0 21.8 + - - -
267A CYS 3.4 9.5 + - - -
268A SER* 3.3 43.1 - - - +
423A CYS 2.8 12.2 + - - +
424A TYR* 3.2 35.3 + - - +
426A CYS* 1.3 75.4 - - - +
428A ILE* 1.3 72.3 + - - +
430A SER* 3.3 7.3 + - - -
431A THR* 3.0 36.9 + - - +
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Residues in contact with ILE 428 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392A LEU* 4.0 11.4 - - + -
394A TYR* 3.7 44.2 - - + -
424A TYR* 3.0 46.1 + - + +
425A ALA* 3.8 4.0 - - - +
427A ARG* 1.3 97.4 - - - +
429A ALA* 1.3 60.8 + - - +
431A THR* 3.1 5.6 + - - +
432A LEU* 2.8 45.0 + - + +
601A PHE* 3.9 19.7 - - + -
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Residues in contact with ALA 429 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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425A ALA 2.9 19.1 + - - +
426A CYS 3.5 6.1 - - - +
428A ILE* 1.3 76.5 - - - +
430A SER* 1.3 58.6 + - - +
432A LEU* 3.4 7.7 + - - +
433A LEU* 3.0 28.2 + - - +
548A ASN* 5.9 0.2 - - + -
549A VAL* 4.3 10.1 - - + +
552A LEU* 3.7 24.9 - - + -
601A PHE* 3.8 13.2 - - + -
605A CYS* 4.2 11.7 - - - +
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Residues in contact with SER 430 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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426A CYS 3.0 13.7 + - - -
427A ARG* 3.4 11.0 - - - -
428A ILE 3.1 0.2 - - - -
429A ALA* 1.3 77.2 - - - +
431A THR* 1.3 58.1 + - - +
433A LEU* 3.3 4.8 + - - +
434A LEU* 3.0 28.3 + - - +
549A VAL* 3.9 24.9 - - - +
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Residues in contact with THR 431 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392A LEU* 3.6 28.0 - - + -
427A ARG* 3.0 21.8 + - - +
428A ILE* 3.7 8.5 - - - +
430A SER* 1.3 76.5 - - - +
432A LEU* 1.3 58.3 + - - +
434A LEU* 3.2 9.7 + - + +
435A TYR* 2.8 54.8 + - + +
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Residues in contact with LEU 432 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392A LEU* 3.7 24.2 - - + -
394A TYR* 4.3 8.3 - - + -
428A ILE* 2.8 39.6 + - + +
429A ALA* 3.6 6.3 - - - +
431A THR* 1.3 73.0 - - - +
433A LEU* 1.3 57.9 + - - +
435A TYR* 3.5 5.8 + - + +
436A GLN* 2.6 41.5 + - - +
601A PHE* 4.4 6.3 - - + -
605A CYS* 4.5 7.2 - - + +
606A VAL* 4.3 23.1 - - + -
609A TYR* 3.7 48.0 - - + -
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Residues in contact with LEU 433 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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429A ALA 3.0 16.7 + - - +
430A SER* 3.6 5.8 - - - +
432A LEU* 1.3 74.5 - - - +
434A LEU* 1.3 60.7 + - - +
436A GLN* 3.3 8.5 + - - +
437A GLU* 2.9 33.3 + - + +
542A THR* 3.6 31.0 - - - +
543A HIS 3.8 6.1 - - - +
544A PRO* 3.8 37.7 - - + -
548A ASN* 6.2 2.2 - - + +
549A VAL* 4.2 20.9 - - + +
550A GLU* 6.2 0.2 - - - +
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Residues in contact with LEU 434 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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321A ALA* 5.8 2.5 - - + -
375A GLU* 4.3 31.9 - - + +
376A GLU* 4.6 21.1 - - + +
430A SER 3.0 13.9 + - - +
431A THR* 3.2 13.0 + - + +
433A LEU* 1.3 78.2 - - - +
435A TYR* 1.3 67.5 + - + +
437A GLU* 3.1 9.9 + - + -
438A LEU* 2.8 55.5 + - + +
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Residues in contact with TYR 435 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314A PHE* 3.9 13.2 - + - -
319A MET* 3.3 45.3 - - + -
320A THR* 3.9 6.7 - - + -
321A ALA* 3.2 40.8 + - + +
391A GLY 4.2 0.4 - - - -
392A LEU* 3.9 40.5 - - + +
431A THR* 2.8 42.7 + - + +
432A LEU* 3.7 7.4 - - - +
434A LEU* 1.3 82.0 - - + +
436A GLN* 1.3 56.6 + - - +
438A LEU* 3.5 2.1 + - - +
439A MET* 2.9 32.6 + - - +
609A TYR* 5.1 1.8 - + + -
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Residues in contact with GLN 436 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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319A MET* 3.9 7.2 - - + -
432A LEU* 2.6 32.8 + - - +
433A LEU* 3.6 7.1 - - - +
435A TYR* 1.3 76.4 - - - +
437A GLU* 1.3 59.6 + - - +
439A MET* 3.3 1.9 - - - +
440A ARG* 3.0 50.7 + - - +
541A GLY* 3.0 13.0 - - - -
542A THR* 2.9 40.2 + - - -
605A CYS 5.2 0.6 + - - -
609A TYR* 3.8 26.2 - - + +
612A PHE* 3.7 29.5 - - + -
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Residues in contact with GLU 437 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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433A LEU* 2.9 30.4 + - + +
434A LEU* 3.1 12.5 + - + +
436A GLN* 1.3 75.8 - - - +
438A LEU* 1.3 63.6 + - + +
440A ARG* 2.8 40.4 + - - +
441A LYS* 3.1 24.1 + - - +
543A HIS* 4.8 1.7 - - - -
544A PRO* 3.7 26.9 - - + +
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Residues in contact with LEU 438 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314A PHE* 3.6 36.8 - - + -
321A ALA* 5.1 3.8 - - + -
375A GLU 3.5 18.2 - - - +
376A GLU* 3.5 26.5 - - - +
378A PRO* 3.6 18.6 - - + -
380A PHE* 3.3 19.9 - - + -
434A LEU* 2.8 37.9 + - + +
435A TYR* 3.8 4.3 - - + +
437A GLU* 1.3 73.6 - - + +
439A MET* 1.3 56.7 + - - +
441A LYS* 3.2 8.5 + - - +
442A GLY 2.8 31.5 + - - -
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Residues in contact with MET 439 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A PHE* 3.1 31.1 - - + -
316A LEU* 2.9 43.6 - - + +
319A MET* 3.5 39.7 - - + +
389A THR* 6.3 0.4 - - - -
435A TYR 2.9 22.6 + - - +
436A GLN 3.3 6.5 - - - +
438A LEU* 1.3 75.7 - - - +
440A ARG* 1.3 56.6 + - - +
442A GLY* 3.3 0.3 + - - -
443A ILE* 2.9 45.2 + - + +
612A PHE* 3.6 16.4 - - + -
616A SER* 4.2 15.3 - - - -
620A ILE* 5.8 2.2 - - - -
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Residues in contact with ARG 440 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
433A LEU* 4.4 0.4 - - - +
436A GLN* 3.0 32.1 + - - +
437A GLU* 2.8 38.9 + - - +
439A MET* 1.3 77.2 - - - +
441A LYS* 1.3 60.9 + - - +
443A ILE* 3.9 6.7 - - - +
444A ARG* 3.1 35.9 + - - +
534A ASP* 5.1 2.1 - - - +
537A ALA* 3.1 39.7 + - + +
538A HIS* 4.3 12.4 - - + +
540A GLU 3.3 15.8 + - - -
542A THR 2.6 27.1 + - - +
543A HIS* 3.3 22.5 + - - +
612A PHE* 3.7 20.6 - - + -
----------------------------------------------------------
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Residues in contact with LYS 441 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A GLU 2.8 28.5 + - - -
377A ASN* 4.2 13.3 + - - +
380A PHE* 4.0 12.3 - - + -
437A GLU 3.1 17.3 + - - +
438A LEU* 3.2 8.9 + - + +
440A ARG* 1.3 74.7 - - - +
442A GLY* 1.3 64.5 + - - +
444A ARG* 3.3 29.0 + - - +
445A TRP* 3.0 67.6 + - + -
----------------------------------------------------------
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Residues in contact with GLY 442 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A LEU* 3.7 13.7 - - - +
353A ILE* 5.0 3.0 - - - +
380A PHE* 3.7 30.4 - - - -
438A LEU 2.8 15.1 + - - -
441A LYS* 1.3 72.8 - - - +
443A ILE* 1.3 56.7 + - - +
445A TRP* 3.3 6.8 + - - +
446A LEU* 2.8 30.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE 443 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A LEU* 3.9 14.3 - - + +
439A MET* 2.9 33.2 + - + +
440A ARG* 3.9 6.3 - - - +
442A GLY* 1.3 71.6 - - - +
444A ARG* 1.3 60.7 + - - +
446A LEU* 3.2 3.1 + - - +
447A ILE* 2.9 36.8 + - + +
534A ASP* 3.1 25.6 - - - +
536A TRP* 3.7 33.4 - - + -
537A ALA* 5.1 2.9 - - + -
612A PHE* 5.4 0.4 - - + -
616A SER* 4.6 5.8 - - - +
619A TRP* 3.8 41.1 - - + -
620A ILE* 5.8 2.2 - - + -
----------------------------------------------------------
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Residues in contact with ARG 444 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
440A ARG* 3.1 38.8 + - - +
441A LYS* 3.4 36.3 - - - +
443A ILE* 1.3 79.8 - - - +
445A TRP* 1.3 75.3 + - + +
447A ILE* 3.7 4.7 + - - +
448A GLU* 3.3 32.3 + - + +
534A ASP* 4.1 20.6 - - - +
538A HIS* 5.3 9.6 - - + -
----------------------------------------------------------
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Residues in contact with TRP 445 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353A ILE* 3.8 25.8 - - + -
354A TYR* 4.1 1.6 - - - -
355A GLU* 3.3 33.4 - - - -
356A GLY* 3.4 30.6 - - - +
377A ASN* 4.3 11.4 - - - -
378A PRO 4.9 1.8 - - - -
380A PHE* 3.6 30.5 - + - -
441A LYS* 3.0 51.0 + - + +
442A GLY* 3.6 4.7 - - - +
443A ILE 3.2 0.2 - - - -
444A ARG* 1.3 91.6 - - + +
446A LEU* 1.3 58.9 + - - +
448A GLU* 3.1 10.5 + - + +
449A LEU* 2.9 31.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 446 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A LEU* 3.8 20.9 - - + -
353A ILE* 4.3 21.5 - - + +
382A VAL* 4.4 10.3 - - + -
442A GLY 2.8 21.7 + - - +
443A ILE 3.7 3.8 - - - +
445A TRP* 1.3 71.8 - - - +
447A ILE* 1.3 59.8 + - - +
449A LEU* 3.0 11.9 + - + +
450A ILE* 2.8 52.3 + - + +
619A TRP* 4.0 8.3 - - + -
623A MET* 3.8 34.8 - - + -
627A ARG* 4.2 19.7 - - - +
----------------------------------------------------------
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Residues in contact with ILE 447 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443A ILE* 2.9 19.5 + - + +
444A ARG* 3.8 4.9 - - - +
446A LEU* 1.3 76.3 - - - +
448A GLU* 1.3 60.6 + - - +
450A ILE* 3.5 9.5 + - + +
451A LYS* 3.0 54.9 + - + +
526A LEU* 5.1 5.6 - - + +
532A LEU* 3.6 28.9 - - + +
534A ASP* 3.6 33.9 - - + +
619A TRP* 3.6 29.6 - - + +
----------------------------------------------------------
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Residues in contact with GLU 448 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356A GLY 5.6 3.6 - - - +
444A ARG* 3.3 20.1 + - + +
445A TRP* 3.1 11.3 + - + +
447A ILE* 1.3 80.5 - - - +
449A LEU* 1.3 59.9 + - + +
451A LYS* 3.4 31.3 + - - +
452A ASP* 3.0 32.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 449 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351A GLU* 5.8 1.1 - - + +
353A ILE* 3.6 36.3 - - + -
356A GLY 3.9 21.3 - - - +
357A ARG* 4.2 1.6 - - + -
358A ARG* 3.5 56.4 + - + +
445A TRP 2.9 11.2 + - - +
446A LEU* 3.0 14.3 + - + +
448A GLU* 1.3 75.4 - - + +
450A ILE* 1.3 64.8 + - - +
452A ASP* 3.0 27.4 + - + +
453A ASP* 3.1 18.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE 450 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A ARG* 5.3 0.2 - - - +
446A LEU* 2.8 38.8 + - + +
447A ILE* 3.8 9.4 - - + +
449A LEU* 1.3 71.3 - - - +
451A LYS* 1.3 58.4 + - - +
453A ASP* 3.0 13.4 + - - +
454A TYR* 2.8 26.3 + - - +
526A LEU* 4.2 11.7 - - + -
532A LEU* 4.8 10.8 - - + -
623A MET* 3.8 28.9 - - + -
626A LEU* 3.7 26.0 - - + -
627A ARG* 3.9 26.7 - - + +
630A LEU* 4.0 10.9 - - + +
----------------------------------------------------------
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Residues in contact with LYS 451 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447A ILE* 3.0 32.6 + - + +
448A GLU* 3.5 33.3 + - - +
449A LEU 3.1 0.2 - - - -
450A ILE* 1.3 74.6 - - - +
452A ASP* 1.3 59.8 + - - +
454A TYR* 3.3 9.6 + - + +
455A ASN* 2.9 39.5 + - - +
526A LEU* 3.2 48.1 + - + -
527A SER* 5.5 0.6 - - - +
528A PRO* 6.1 1.0 - - - +
----------------------------------------------------------
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Residues in contact with ASP 452 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A ARG* 6.4 0.2 - - - +
448A GLU* 3.0 21.6 + - - +
449A LEU* 3.0 22.4 + - + +
451A LYS* 1.3 72.2 - - - +
453A ASP* 1.3 57.8 + - - +
455A ASN* 3.0 10.9 + - - +
456A GLU* 2.6 38.4 + - - +
----------------------------------------------------------
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Residues in contact with ASP 453 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A ARG* 2.8 35.4 + - - -
384A ARG* 4.9 4.2 + - - -
449A LEU 3.1 10.1 + - - +
450A ILE* 3.0 14.7 + - - +
452A ASP* 1.3 78.1 - - - +
454A TYR* 1.3 63.3 + - - +
456A GLU* 3.0 15.1 + - - +
457A THR* 3.0 33.7 + - + +
627A ARG* 4.1 10.4 + - - -
630A LEU* 3.8 14.2 - - + +
----------------------------------------------------------
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Residues in contact with TYR 454 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450A ILE 2.8 15.8 + - - +
451A LYS* 3.5 9.4 - - + +
453A ASP* 1.3 72.7 - - - +
455A ASN* 1.3 77.1 + - - +
457A THR* 3.5 1.9 + - - -
458A VAL* 3.1 58.7 + - + +
519A LEU* 3.3 40.9 + - + +
520A GLN* 4.8 1.0 - - - -
522A ILE* 4.1 16.2 - - + -
523A ASP* 3.1 41.1 + - + +
526A LEU* 4.1 17.0 - - + -
630A LEU* 3.7 14.9 - - + +
----------------------------------------------------------
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Residues in contact with ASN 455 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451A LYS* 2.9 26.6 + - - +
452A ASP* 3.6 8.7 + - - +
454A TYR* 1.3 95.6 - - - +
456A GLU* 1.3 65.4 + - - +
458A VAL* 3.8 6.1 - - - +
459A HIS* 3.2 23.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 456 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452A ASP* 2.6 20.0 + - - +
453A ASP* 3.0 16.6 + - - +
455A ASN* 1.3 76.9 - - - +
457A THR* 1.3 64.8 + - + +
459A HIS* 3.6 5.0 + - - +
460A LYS* 3.2 20.8 + - - +
638A PHE* 5.9 3.3 - - - -
----------------------------------------------------------
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Residues in contact with THR 457 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453A ASP* 3.0 19.5 + - + +
454A TYR 3.5 6.4 + - - -
456A GLU* 1.3 78.0 - - + +
458A VAL* 1.3 65.2 + - - +
460A LYS* 3.1 8.9 + - - +
461A LYS* 2.8 31.7 + - - +
519A LEU* 4.1 17.2 - - - +
630A LEU* 4.2 7.9 - - + +
633A LEU 5.6 0.9 - - - -
634A THR* 3.1 49.0 + - + +
637A CYS* 4.5 7.5 - - - -
----------------------------------------------------------
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Residues in contact with VAL 458 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
454A TYR* 3.1 50.6 + - + +
455A ASN* 4.1 8.1 - - - +
456A GLU 3.3 0.2 - - - -
457A THR* 1.3 83.1 + - - +
459A HIS* 1.3 61.2 + - - +
461A LYS* 3.8 8.5 - - - +
462A THR* 3.0 36.8 + - - +
519A LEU* 3.7 27.6 - - + -
----------------------------------------------------------
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Residues in contact with HIS 459 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455A ASN 3.2 17.3 + - - +
456A GLU* 3.9 5.2 - - - +
457A THR 3.2 0.4 - - - -
458A VAL* 1.3 75.4 - - - +
460A LYS* 1.3 62.8 + - - +
462A THR* 3.4 6.4 + - - -
463A GLU* 2.8 62.5 + - + +
----------------------------------------------------------
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Residues in contact with LYS 460 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456A GLU* 3.2 12.6 + - + +
457A THR* 3.3 13.7 - - - +
459A HIS* 1.3 80.3 - - - +
461A LYS* 1.3 63.8 + - - +
463A GLU* 3.2 26.8 + - - +
464A VAL* 3.1 34.8 + - + +
634A THR* 6.4 1.1 - - + -
637A CYS* 4.6 16.4 - - + -
638A PHE* 3.9 25.6 - - + -
641A GLU* 2.9 47.1 + - - -
----------------------------------------------------------
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Residues in contact with LYS 461 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457A THR 2.8 18.6 + - - +
458A VAL* 3.8 8.3 - - - +
459A HIS 3.2 0.2 - - - -
460A LYS* 1.3 69.0 - - - +
462A THR* 1.3 64.4 + - - +
463A GLU 2.9 3.6 - - - -
464A VAL* 2.8 31.2 + - + +
465A VAL* 2.8 29.0 + - + +
512A GLN* 4.0 18.6 + - + +
515A ILE* 3.3 29.4 - - + -
516A GLU* 2.4 40.7 + - - +
519A LEU* 3.7 17.0 - - + -
637A CYS* 3.8 17.2 - - - -
----------------------------------------------------------
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Residues in contact with THR 462 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458A VAL* 3.0 23.1 + - - +
459A HIS* 3.9 6.1 - - - -
461A LYS* 1.3 83.7 - - - +
463A GLU* 1.3 60.5 + - - +
465A VAL* 3.6 13.2 - - + +
466A ILE* 3.2 28.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU 463 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459A HIS* 2.8 48.1 + - + +
460A LYS* 3.2 36.2 + - - +
461A LYS 2.9 0.2 + - - -
462A THR* 1.3 77.9 - - - +
464A VAL* 1.3 58.2 + - + +
466A ILE* 3.1 26.0 - - + +
467A THR* 3.6 8.1 - - - +
----------------------------------------------------------
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Residues in contact with VAL 464 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460A LYS* 3.2 22.9 - - + +
461A LYS* 2.8 25.9 + - + +
463A GLU* 1.3 75.2 - - + +
465A VAL* 1.3 56.5 + - - +
466A ILE 3.1 1.8 - - - -
467A THR* 2.9 11.8 + - - +
468A LEU* 2.8 36.7 + - - +
512A GLN* 3.4 15.9 - - - +
637A CYS* 4.7 8.3 - - - +
640A ILE* 4.4 13.0 - - + -
641A GLU* 3.5 37.7 - - + +
644A VAL* 5.0 2.4 - - + +
----------------------------------------------------------
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Residues in contact with VAL 465 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461A LYS* 2.8 39.4 + - + +
462A THR* 3.6 13.2 - - + +
463A GLU 3.4 0.2 - - - -
464A VAL* 1.3 78.6 - - - +
466A ILE* 1.3 57.7 + - + +
468A LEU* 4.2 2.7 - - + -
469A ASP* 2.7 57.4 + - + +
512A GLN* 3.1 35.4 - - - +
----------------------------------------------------------
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Residues in contact with ILE 466 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462A THR* 3.2 15.6 + - + +
463A GLU* 3.1 25.4 - - + +
464A VAL 3.1 0.8 - - - -
465A VAL* 1.3 81.8 - - + +
467A THR* 1.3 64.6 + - + +
469A ASP* 5.1 1.8 - - + -
470A PHE* 3.1 23.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 467 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463A GLU 3.6 14.8 - - - +
464A VAL* 2.9 15.2 + - - +
466A ILE* 1.3 86.9 - - + +
468A LEU* 1.3 57.7 + - - +
470A PHE* 3.5 4.7 - - - +
471A CYS* 2.7 43.6 + - - +
644A VAL* 3.9 14.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 468 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464A VAL* 2.8 18.9 + - + +
465A VAL* 3.9 2.5 - - - +
467A THR* 1.3 74.3 + - - +
469A ASP* 1.3 57.2 + - - +
470A PHE 3.0 4.3 - - - -
471A CYS* 3.2 1.5 + - + -
472A ILE* 2.8 34.7 + - - +
505A LEU* 3.4 37.9 - - + -
508A LEU* 4.1 20.9 - - + -
509A SER* 4.0 18.8 - - - +
512A GLN* 3.6 28.9 - - + +
640A ILE* 4.5 2.0 - - + -
644A VAL* 3.5 37.2 - - + -
----------------------------------------------------------
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Residues in contact with ASP 469 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465A VAL* 2.7 39.4 + - + +
466A ILE* 5.1 1.6 - - - -
468A LEU* 1.3 74.8 - - - +
470A PHE* 1.3 56.9 + - - +
472A ILE* 3.2 23.6 - - - +
473A ARG* 3.8 10.0 - - - +
509A SER* 4.4 12.9 + - - -
512A GLN* 5.6 0.3 + - - -
----------------------------------------------------------
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Residues in contact with PHE 470 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466A ILE 3.1 22.8 + - - +
467A THR* 3.3 7.1 + - - +
468A LEU 3.0 0.4 - - - -
469A ASP* 1.3 79.2 - - - +
471A CYS* 1.3 69.2 + - - +
472A ILE 3.4 0.2 - - - -
473A ARG* 3.2 10.0 + - + +
474A ASN* 2.9 35.8 + - + +
----------------------------------------------------------
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Residues in contact with CYS 471 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467A THR* 2.7 27.0 + - - +
468A LEU* 4.2 2.5 - - - +
470A PHE* 1.3 77.1 - - - +
472A ILE* 1.3 66.0 + - - +
473A ARG 3.0 2.4 + - - -
474A ASN* 3.3 20.6 + - - +
475A ILE* 3.5 18.2 + - - +
505A LEU* 4.9 5.9 - - + +
644A VAL* 5.2 9.6 - - + +
647A TYR* 5.5 5.8 - - + +
648A GLN* 4.6 26.2 - - - +
651A THR* 6.5 1.3 - - - -
----------------------------------------------------------
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Residues in contact with ILE 472 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468A LEU 2.8 21.6 + - - +
469A ASP* 3.2 25.1 - - - +
471A CYS* 1.3 77.6 - - - +
473A ARG* 1.3 64.5 + - + +
475A ILE* 4.0 4.9 - - - +
476A GLU 4.4 0.3 + - - -
502A HIS* 3.3 39.2 + - + +
505A LEU* 3.4 39.3 - - + +
506A LEU* 4.6 17.0 - - + +
509A SER* 4.6 12.3 - - - +
----------------------------------------------------------
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Residues in contact with ARG 473 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469A ASP 3.8 11.9 - - - +
470A PHE* 3.2 12.1 + - + +
471A CYS 3.0 0.6 - - - -
472A ILE* 1.3 81.2 - - + +
474A ASN* 1.3 64.3 + - - +
475A ILE 3.0 5.4 - - - -
476A GLU* 2.9 39.4 + - - +
477A LYS* 3.0 15.9 + - + +
----------------------------------------------------------
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Residues in contact with ASN 474 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470A PHE* 2.9 27.2 + - + +
471A CYS* 3.3 18.3 + - + +
473A ARG* 1.3 76.3 - - - +
475A ILE* 1.3 63.4 - - - +
477A LYS* 3.3 30.1 - - - +
478A THR* 3.5 13.9 + - - +
651A THR* 4.3 22.0 - - - -
652A ASN* 5.5 0.6 + - - -
----------------------------------------------------------
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Residues in contact with ILE 475 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471A CYS 3.5 13.9 + - - +
472A ILE 4.0 8.1 - - - +
473A ARG 3.0 0.4 - - - -
474A ASN* 1.3 75.0 - - - +
476A GLU* 1.3 61.3 + - - +
477A LYS 3.0 4.0 - - - -
478A THR* 2.3 31.2 + - - +
479A VAL* 3.5 7.2 + - + +
498A ILE* 3.5 35.4 - - + -
501A ILE* 3.6 36.6 - - + -
502A HIS* 3.9 18.8 - - + +
505A LEU* 5.1 7.0 - - + -
647A TYR* 6.5 0.7 - - + -
651A THR* 5.9 8.7 - - - -
----------------------------------------------------------
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Residues in contact with GLU 476 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472A ILE 4.4 0.6 + - - -
473A ARG* 2.9 33.6 + - - +
475A ILE* 1.3 78.2 - - - +
477A LYS* 1.3 66.0 + - - +
479A VAL* 3.3 23.9 + - + +
480A LYS* 3.3 28.8 + - - +
502A HIS* 4.9 16.4 - - + +
----------------------------------------------------------
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Residues in contact with LYS 477 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473A ARG* 3.0 15.4 + - + +
474A ASN* 3.3 29.8 - - - +
475A ILE 3.0 0.4 - - - -
476A GLU* 1.3 80.4 - - - +
478A THR* 1.3 65.2 + - + +
480A LYS* 3.8 4.8 + - - +
481A VAL* 3.1 40.1 + - + +
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Residues in contact with THR 478 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474A ASN* 3.9 12.2 + - - +
475A ILE* 2.3 32.3 + - - +
477A LYS* 1.3 81.2 - - + +
479A VAL* 1.3 65.8 + - - +
481A VAL* 2.9 32.8 + - + +
498A ILE* 5.5 2.8 - - - +
651A THR 5.9 2.9 - - - +
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Residues in contact with VAL 479 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475A ILE* 3.7 15.9 - - + +
476A GLU* 3.3 18.3 + - + +
478A THR* 1.3 77.3 + - - +
480A LYS* 1.3 69.5 + - - +
481A VAL 2.9 13.5 - - - +
498A ILE* 4.5 20.6 - - + -
----------------------------------------------------------
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Residues in contact with LYS 480 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476A GLU* 3.3 29.7 + - - +
477A LYS* 4.0 4.5 - - - +
478A THR 3.3 0.2 - - - -
479A VAL* 1.3 84.1 - - + +
481A VAL* 1.3 68.0 + - + +
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Residues in contact with VAL 481 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477A LYS* 3.1 39.7 - - + +
478A THR* 2.9 23.7 + - + +
479A VAL 2.9 16.5 - - - +
480A LYS* 1.3 80.2 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il