Contacts of the helix formed by residues 1595 - 1630 (chain A) in PDB entry 4J5L
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU1595 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1517A VAL* 4.1 12.6 - - + -
1529A VAL* 4.0 9.4 - - + -
1533A LEU* 4.0 20.9 - - + -
1568A LEU* 4.0 25.8 - - + +
1590A LEU* 3.7 30.9 - - + +
1593A PHE* 3.7 14.3 + - + +
1594A ASP* 1.3 77.5 + - - +
1596A ALA* 1.3 62.8 + - - +
1597A GLU 3.2 3.4 - - - +
1598A TYR* 3.2 15.0 + - + -
1599A ARG* 3.0 33.3 + - + +
1815B PRO* 3.8 27.4 - - + -
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Residues in contact with ALA1596 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1574A GLU* 5.1 0.7 - - - +
1594A ASP* 3.3 22.1 + - - +
1595A LEU* 1.3 77.8 - - - +
1597A GLU* 1.3 62.7 + - - +
1599A ARG* 3.4 38.7 + - - +
1600A GLN* 3.4 12.8 + - - +
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Residues in contact with GLU1597 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1594A ASP 4.9 1.5 + - - +
1595A LEU 3.2 0.8 - - - -
1596A ALA* 1.3 79.2 - - - +
1598A TYR* 1.3 83.2 + - + +
1600A GLN* 3.3 15.4 + - - +
1601A VAL* 3.4 19.2 + - + +
1814B SER* 3.8 11.1 + - - +
1816B GLN* 3.5 47.1 + - - +
1820B ASP* 5.5 6.4 - - - +
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Residues in contact with TYR1598 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1530A ARG* 3.5 32.2 + - - +
1533A LEU* 3.7 48.7 - - + -
1534A THR* 4.7 11.4 + - - -
1537A ILE* 4.6 14.5 - - + +
1568A LEU* 5.7 2.2 - - + -
1595A LEU* 3.2 22.0 + - + +
1597A GLU* 1.3 101.1 + - + +
1599A ARG* 1.3 60.3 + - + +
1601A VAL* 3.2 11.4 + - + +
1602A LEU* 3.0 36.6 + - + +
1814B SER* 5.8 0.2 - - - -
1815B PRO* 4.0 24.3 - - + +
1816B GLN* 4.8 6.4 - - - +
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Residues in contact with ARG1599 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1565A LEU* 3.4 17.7 - - + +
1568A LEU* 3.9 28.3 + - + -
1569A LYS* 3.7 34.5 - - - +
1572A SER* 4.0 19.8 - - - -
1574A GLU* 3.2 31.0 + - - -
1577A PHE* 5.0 7.0 - - - -
1594A ASP* 4.3 3.4 + - - -
1595A LEU* 3.0 24.7 + - + +
1596A ALA* 3.5 39.9 - - - +
1597A GLU 3.2 0.2 - - - -
1598A TYR* 1.3 77.2 - - - +
1600A GLN* 1.3 56.3 + - - +
1602A LEU* 3.5 3.1 + - - -
1603A SER* 2.9 28.6 + - - -
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Residues in contact with GLN1600 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1596A ALA 3.4 7.8 + - - +
1597A GLU* 3.3 10.1 + - - +
1598A TYR 3.3 0.4 - - - -
1599A ARG* 1.3 75.2 - - - +
1601A VAL* 1.3 61.0 + - + +
1603A SER* 3.3 12.7 + - - -
1604A ASP* 2.9 64.9 + - - +
1823B HIS* 6.0 6.7 - - + -
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Residues in contact with VAL1601 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1537A ILE* 3.7 33.2 - - + -
1541A LYS* 6.4 0.4 - - - -
1597A GLU* 3.4 19.7 + - + +
1598A TYR* 3.2 14.3 + - + +
1600A GLN* 1.3 78.0 - - + +
1602A LEU* 1.3 58.0 + - - +
1604A ASP* 3.3 9.5 + - - +
1605A LEU* 2.9 26.0 + - + +
1823B HIS* 6.4 2.0 - - + +
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Residues in contact with LEU1602 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1533A LEU* 5.6 2.0 - - + -
1536A THR* 5.7 0.2 - - + -
1537A ILE* 3.7 30.1 - - + -
1540A ILE* 5.2 4.0 - - + -
1561A THR* 4.0 23.0 - - + +
1564A PHE* 3.7 25.4 - - + -
1565A LEU* 4.3 21.5 - - + +
1568A LEU* 3.6 31.6 - - + -
1598A TYR* 3.0 22.5 + - + +
1599A ARG 3.8 4.5 - - - +
1601A VAL* 1.3 73.6 - - - +
1603A SER* 1.3 61.3 + - - +
1605A LEU* 3.2 12.1 + - + +
1606A ALA* 2.9 29.1 + - - +
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Residues in contact with SER1603 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1565A LEU* 4.0 19.0 - - - +
1569A LYS* 6.2 0.7 - - - -
1599A ARG 2.9 18.6 + - - -
1600A GLN* 3.6 20.0 + - - -
1602A LEU* 1.3 75.8 - - - +
1604A ASP* 1.3 63.9 + - - +
1606A ALA* 3.4 5.3 + - - +
1607A ILE* 3.2 29.5 + - - +
1829A PHE* 4.7 9.9 - - - +
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Residues in contact with ASP1604 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1600A GLN* 2.9 47.4 + - - +
1601A VAL* 3.6 8.4 - - - +
1603A SER* 1.3 75.6 - - - +
1605A LEU* 1.3 63.0 + - - +
1607A ILE* 3.4 18.8 + - - +
1608A GLN* 3.3 33.2 + - - +
1823B HIS* 5.7 4.2 - - - -
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Residues in contact with LEU1605 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1537A ILE* 4.3 22.9 - - + +
1540A ILE* 4.1 27.1 - - + -
1541A LYS* 3.9 28.9 - - + -
1544A LEU* 5.1 4.0 - - + -
1561A THR* 4.2 12.6 - - + -
1601A VAL* 2.9 14.6 + - + +
1602A LEU* 3.2 18.4 + - + +
1604A ASP* 1.3 75.5 - - - +
1606A ALA* 1.3 65.3 + - - +
1608A GLN* 3.1 22.0 + - + +
1609A ILE* 3.0 39.9 + - + +
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Residues in contact with ALA1606 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1558A LEU* 3.4 11.8 - - + +
1561A THR* 4.5 8.5 - - + +
1562A CYS* 4.3 13.9 - - - -
1565A LEU* 5.4 4.5 - - + -
1602A LEU 2.9 16.5 + - - +
1603A SER* 3.7 9.0 - - - +
1605A LEU* 1.3 76.6 - - - +
1607A ILE* 1.3 57.8 + - - +
1609A ILE* 3.3 9.9 + - - -
1610A TYR* 2.9 27.4 + - - +
1829A PHE* 3.7 23.3 - - + -
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Residues in contact with ILE1607 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1603A SER* 3.2 20.9 - - - +
1604A ASP* 3.5 21.1 - - - +
1605A LEU 3.2 0.6 - - - -
1606A ALA* 1.3 77.5 - - - +
1608A GLN* 1.3 62.8 + - + +
1610A TYR* 3.3 4.2 + - - +
1611A GLN* 3.0 42.5 + - - +
1827A VAL* 4.5 14.4 - - + +
1829A PHE* 3.7 23.3 - - + -
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Residues in contact with GLN1608 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1541A LYS* 4.9 12.8 + - - +
1544A LEU* 5.8 0.4 - - + -
1604A ASP* 3.3 24.5 + - - +
1605A LEU* 3.1 22.1 + - + +
1607A ILE* 1.3 77.3 - - + +
1609A ILE* 1.3 61.4 + - + +
1611A GLN* 3.4 13.4 + - - +
1612A GLN* 3.1 22.3 + - - +
1615A ARG* 5.5 0.2 + - - -
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Residues in contact with ILE1609 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1540A ILE* 4.2 5.6 - - + -
1544A LEU* 3.5 32.1 - - + -
1554A VAL* 3.7 31.8 - - + +
1557A TRP 3.7 7.4 - - - +
1558A LEU* 3.7 15.0 - - + +
1561A THR* 3.5 28.9 - - - +
1605A LEU* 3.0 30.9 + - + +
1606A ALA* 3.3 7.4 + - - +
1608A GLN* 1.3 73.2 - - + +
1610A TYR* 1.3 60.6 + - - +
1612A GLN* 3.2 7.2 + - - +
1613A LEU* 2.8 27.7 + - - +
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Residues in contact with TYR1610 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1558A LEU* 3.9 19.6 - - + +
1606A ALA 2.9 13.6 + - - +
1607A ILE* 3.5 8.7 - - - +
1609A ILE* 1.3 76.3 - - - +
1611A GLN* 1.3 63.7 - - + +
1613A LEU* 3.1 4.6 + - + +
1614A VAL* 2.9 49.9 + - + +
1684A LEU* 3.9 18.8 - - + -
1687A GLN* 3.5 27.8 + - + +
1688A VAL* 3.6 28.0 + - + -
1691A GLN* 4.2 6.6 + - - +
1824A ILE* 4.5 6.1 - - + -
1825A PHE* 4.3 14.2 + - - +
1827A VAL* 3.6 38.3 - - + +
1829A PHE* 4.1 10.1 - - + -
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Residues in contact with GLN1611 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1607A ILE* 3.0 36.4 + - + +
1608A GLN* 3.8 11.2 - - - +
1610A TYR* 1.3 84.5 - - + +
1612A GLN* 1.3 57.8 + - - +
1614A VAL* 3.5 6.7 + - - +
1615A ARG* 3.0 48.0 + - - +
1824A ILE* 4.4 24.0 - - + +
1827A VAL* 6.0 0.7 - - + -
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Residues in contact with GLN1612 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1544A LEU* 5.5 10.8 - - + +
1548A GLY* 2.9 35.5 + - - +
1549A ASP* 4.9 1.2 - - - +
1554A VAL* 4.4 10.8 - - + -
1608A GLN 3.1 14.9 + - - +
1609A ILE* 3.5 11.4 - - + +
1611A GLN* 1.3 73.2 - - - +
1613A LEU* 1.3 61.1 + - - +
1615A ARG* 2.4 41.2 + - - +
1616A VAL* 2.9 45.3 + - - +
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Residues in contact with LEU1613 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1551A PHE* 3.5 40.2 - - + -
1554A VAL* 3.7 23.5 - - + +
1555A SER* 3.8 11.4 - - - +
1558A LEU* 3.7 24.7 - - + -
1609A ILE 2.8 14.0 + - - +
1610A TYR* 3.3 10.3 - - + +
1612A GLN* 1.3 76.5 - - - +
1614A VAL* 1.3 57.8 + - + +
1616A VAL* 3.2 6.5 + - + +
1617A LEU* 2.9 35.1 + - + +
1675A MET* 4.8 2.5 - - - -
1680A MET* 4.3 14.6 - - + -
1688A VAL* 4.3 20.6 - - + -
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Residues in contact with VAL1614 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1610A TYR* 2.9 51.3 + - + +
1611A GLN 3.7 4.7 - - - +
1613A LEU* 1.3 76.8 - - + +
1615A ARG* 1.3 58.7 + - - +
1617A LEU* 3.2 13.2 + - + +
1618A GLU* 2.8 53.7 + - + +
1688A VAL* 5.6 3.4 - - + -
1691A GLN* 3.7 28.0 - - + -
1824A ILE* 3.9 20.0 - - + -
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Residues in contact with ARG1615 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1611A GLN* 3.0 44.5 + - - +
1612A GLN* 2.4 50.4 + - - +
1614A VAL* 1.3 78.3 - - - +
1616A VAL* 1.3 60.3 + - - +
1618A GLU* 3.5 12.6 + - - +
1619A ASN* 3.0 45.0 + - - +
1824A ILE* 5.3 7.7 - - + +
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Residues in contact with VAL1616 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1548A GLY 3.3 26.0 - - - +
1549A ASP* 4.0 22.7 - - + +
1551A PHE* 4.0 29.2 - - + +
1554A VAL* 4.7 5.8 - - + -
1612A GLN* 2.9 27.1 + - + +
1613A LEU* 3.5 9.2 - - + +
1615A ARG* 1.3 74.3 - - - +
1617A LEU* 1.3 65.6 + - - +
1619A ASN* 3.3 9.9 + - - +
1620A ILE* 3.1 32.3 + - + +
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Residues in contact with LEU1617 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1551A PHE* 3.5 34.1 - - + -
1613A LEU* 2.9 23.0 + - + +
1614A VAL* 3.2 15.2 + - + +
1616A VAL* 1.3 73.5 - - - +
1618A GLU* 1.3 66.8 + - + +
1620A ILE* 3.1 3.6 + - - +
1621A LEU* 2.9 28.9 + - + +
1671A PHE* 3.5 34.5 - - + -
1688A VAL* 3.6 31.0 - - + +
1691A GLN* 6.5 0.4 - - + -
1692A MET* 3.8 23.3 - - + -
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Residues in contact with GLU1618 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1614A VAL* 2.8 42.9 + - + +
1615A ARG* 3.7 12.9 - - - +
1617A LEU* 1.3 73.3 - - + +
1619A ASN* 1.3 61.7 + - - +
1621A LEU* 4.7 4.0 - - - +
1622A GLN* 2.9 41.3 + - - +
1691A GLN* 3.7 5.9 + - + -
1695A ILE* 3.2 46.1 - - + +
1821A ALA 4.0 7.3 - - - +
1822A LYS* 4.2 23.8 - - + +
1823A HIS 4.1 3.6 - - - +
1824A ILE* 4.3 5.1 - - - +
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Residues in contact with ASN1619 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1615A ARG* 3.0 33.7 + - - +
1616A VAL* 3.6 9.8 - - - +
1617A LEU 3.2 0.2 - - - -
1618A GLU* 1.3 82.2 - - - +
1620A ILE* 1.3 61.6 + - + +
1622A GLN* 4.5 6.4 - - - +
1623A PRO* 3.5 17.3 - - - +
1822A LYS* 5.4 8.5 + - - -
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Residues in contact with ILE1620 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1549A ASP 5.7 1.3 - - - +
1551A PHE* 4.4 8.5 - - + +
1616A VAL* 3.2 30.5 - - + +
1617A LEU 3.1 7.4 + - - +
1619A ASN* 1.3 78.9 - - + +
1621A LEU* 1.3 63.0 + - - +
1623A PRO* 3.4 11.1 - - - +
1624A MET* 4.0 15.4 - - + +
1667A GLN* 3.5 33.0 - - + +
1671A PHE* 3.8 22.4 - - + -
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Residues in contact with LEU1621 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1617A LEU 2.9 15.5 + - - +
1618A GLU* 4.2 3.1 - - - +
1620A ILE* 1.3 77.7 - - - +
1622A GLN* 1.3 58.5 + - - +
1624A MET* 2.9 30.5 + - + +
1625A ILE* 3.2 23.9 + - + +
1664A ILE* 4.4 16.2 - - + -
1667A GLN* 4.0 26.5 - - + -
1668A LEU* 4.1 26.2 - - + -
1671A PHE* 3.9 18.2 - - + -
1692A MET* 4.2 27.8 - - + +
1695A ILE* 5.2 6.7 - - + -
1696A ILE* 4.7 7.6 - - + -
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Residues in contact with GLN1622 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1618A GLU* 2.9 25.8 + - - +
1619A ASN* 4.5 5.7 - - - +
1621A LEU* 1.3 75.9 - - - +
1623A PRO* 1.3 68.3 - - + +
1624A MET 3.2 0.5 + - - -
1625A ILE* 3.5 21.5 + - - +
1626A VAL* 4.5 4.9 + - - +
1695A ILE* 5.7 0.7 - - + +
1699A ILE* 3.8 26.4 - - + +
1821A ALA* 5.9 1.4 - - - +
1822A LYS* 4.3 22.2 - - - +
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Residues in contact with PRO1623 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1619A ASN 3.5 13.0 - - - +
1620A ILE 3.4 17.3 - - - +
1621A LEU 3.5 0.2 - - - -
1622A GLN* 1.3 94.8 - - + +
1624A MET* 1.3 59.8 + - + +
1625A ILE 3.5 0.2 - - - -
1626A VAL* 4.9 1.4 + - - +
1627A SER* 4.2 9.2 + - - -
1657A GLY* 5.4 1.7 - - - -
1659A TYR* 3.6 27.3 - - + +
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Residues in contact with MET1624 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1620A ILE* 4.0 17.5 - - + +
1621A LEU* 2.9 15.1 + - + +
1623A PRO* 1.3 79.6 - - + +
1625A ILE* 1.3 60.6 + - + +
1626A VAL 3.6 0.4 - - - -
1627A SER* 3.6 2.0 + - - -
1628A GLY* 2.9 30.3 + - - -
1659A TYR* 3.6 46.7 - - + +
1663A SER* 3.9 22.7 - - - +
1664A ILE* 3.7 17.5 - - + +
1667A GLN* 3.5 38.1 - - + +
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Residues in contact with ILE1625 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1621A LEU* 3.2 28.9 - - + +
1622A GLN* 3.5 5.3 + - - +
1623A PRO 3.5 1.2 - - - -
1624A MET* 1.3 78.4 - - + +
1626A VAL* 1.3 58.0 + - - +
1629A MET* 2.8 40.6 + - + +
1664A ILE* 4.0 9.4 - - + -
1695A ILE* 3.8 22.7 - - + +
1696A ILE* 3.8 26.0 - - + +
1699A ILE* 3.7 39.5 - - + -
1700A THR* 3.3 25.1 - - - +
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Residues in contact with VAL1626 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1622A GLN 4.5 5.1 + - - +
1623A PRO 4.9 1.9 + - - +
1624A MET 3.6 0.2 - - - -
1625A ILE* 1.3 76.1 - - - +
1627A SER* 1.3 57.0 + - - +
1630A LEU* 2.9 35.2 + - + +
1631A GLU* 3.0 37.1 + - + +
1699A ILE* 4.0 13.5 - - + +
1700A THR* 5.8 0.7 - - - +
1703A ASN* 3.3 37.2 - - + +
1707A ARG* 3.6 14.8 - - - +
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Residues in contact with SER1627 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1623A PRO 4.2 10.4 + - - -
1624A MET 3.6 6.0 + - - -
1625A ILE 3.3 0.2 - - - -
1626A VAL* 1.3 78.9 - - - +
1628A GLY* 1.3 59.8 + - - +
1631A GLU* 4.0 16.8 + - - -
1632A HIS* 3.0 43.5 + - - +
1657A GLY* 4.3 9.4 + - - -
1658A THR 3.9 0.5 - - - -
1659A TYR* 2.6 41.2 + - - -
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Residues in contact with GLY1628 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1624A MET 2.9 17.1 + - - -
1627A SER* 1.3 77.3 - - - +
1629A MET* 1.3 62.8 + - - +
1632A HIS* 4.4 8.7 - - - +
1634A THR* 4.6 2.3 - - - +
1659A TYR 3.6 1.7 + - - -
1660A THR* 3.5 28.4 - - - -
1661A LEU* 3.6 20.7 + - - +
1664A ILE* 4.2 4.5 - - - -
1722A ASN* 4.1 4.7 + - - -
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Residues in contact with MET1629 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1625A ILE* 2.8 27.6 + - + +
1626A VAL* 5.1 0.2 - - - -
1628A GLY* 1.3 73.7 - - - +
1630A LEU* 1.3 66.3 + - + +
1632A HIS 4.8 3.6 - - - +
1661A LEU* 3.7 23.6 - - + -
1664A ILE* 3.8 16.8 - - + -
1696A ILE* 3.7 14.8 - - + -
1700A THR* 3.7 33.2 - - + +
1715A LYS* 5.2 0.3 - - - +
1718A GLN* 5.1 4.0 - - - +
1719A ILE* 4.5 7.4 + - + +
1722A ASN* 3.1 40.0 + - - +
1723A VAL* 5.4 1.8 - - - -
1726A LEU* 3.6 34.5 - - + -
1747A LEU* 5.7 5.2 - - - -
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Residues in contact with LEU1630 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1626A VAL* 2.9 21.6 + - + +
1628A GLY 3.7 0.4 - - - -
1629A MET* 1.3 91.2 - - - +
1631A GLU* 1.3 62.2 + - - +
1632A HIS 3.3 6.0 + - - +
1700A THR* 3.6 45.1 - - + +
1703A ASN* 3.8 22.2 - - + -
1704A LEU* 4.4 5.4 - - + +
1710A MET* 4.0 29.7 - - + +
1715A LYS* 3.1 34.3 + - + +
1718A GLN* 4.2 0.5 - - - +
1719A ILE* 3.7 24.9 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il