Contacts of the helix formed by residues 109 - 189 (chain B) in PDB entry 4JPB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 109 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108B GLN* 1.3 77.8 - - - +
110B GLY* 1.3 67.5 + - - +
112B THR* 3.2 19.0 + - + +
113B LEU* 2.9 44.5 + - + +
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Residues in contact with GLY 110 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108B GLN* 3.0 4.3 - - - +
109B ILE* 1.3 85.7 - - - +
111B GLU* 1.3 61.5 + - - -
112B THR 3.0 0.7 + - - -
113B LEU* 3.2 10.0 + - - +
114B GLU* 3.0 23.2 + - - +
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Residues in contact with GLU 111 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108B GLN* 3.7 25.2 + - + +
110B GLY* 1.3 73.8 - - - +
112B THR* 1.3 56.7 + - - +
114B GLU* 3.6 8.7 + - + +
115B ASN* 3.1 45.1 + - - +
181C GLU* 3.0 27.6 - - - +
184C GLU* 5.5 2.1 - - - +
185C SER* 4.7 8.5 + - - -
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Residues in contact with THR 112 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108B GLN* 3.4 12.2 + - - -
109B ILE* 3.2 24.6 + - + +
110B GLY 3.0 0.6 - - - -
111B GLU* 1.3 76.5 - - - +
113B LEU* 1.3 68.4 + - + +
114B GLU 3.1 0.9 - - - -
115B ASN* 2.8 6.8 + - - +
116B ILE* 2.8 47.1 + - + +
182C ILE* 4.4 18.0 - - + +
185C SER* 4.4 17.0 + - - -
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Residues in contact with LEU 113 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109B ILE* 2.9 41.2 + - + +
110B GLY* 3.6 9.2 - - - +
112B THR* 1.3 77.1 - - + +
114B GLU* 1.3 65.3 + - - +
116B ILE* 3.4 12.5 + - + +
117B ARG* 3.1 28.0 + - - +
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Residues in contact with GLU 114 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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110B GLY 3.0 16.9 + - - +
111B GLU* 3.7 11.2 - - + +
112B THR 3.1 0.2 - - - -
113B LEU* 1.3 78.2 - - - +
115B ASN* 1.3 61.2 + - - +
117B ARG* 3.0 39.7 + - - +
118B SER* 2.8 30.9 + - - +
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Residues in contact with ASN 115 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B GLU* 3.1 29.6 + - - +
112B THR 2.8 8.6 + - - +
114B GLU* 1.3 79.2 - - - +
116B ILE* 1.3 60.7 + - - +
117B ARG 3.0 1.6 - - - -
118B SER* 3.0 7.1 + - - -
119B ILE* 2.8 33.9 + - - +
178C LYS* 3.9 26.2 + - + +
181C GLU* 3.4 31.3 + - - +
182C ILE* 3.4 28.5 - - + +
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Residues in contact with ILE 116 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112B THR* 2.8 33.8 + - + +
113B LEU* 4.0 11.9 - - + +
115B ASN* 1.3 74.6 - - - +
117B ARG* 1.3 60.6 + - - +
119B ILE* 4.0 11.1 - - + +
120B GLU* 3.1 36.8 + - - +
182C ILE* 4.2 17.0 - - + -
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Residues in contact with ARG 117 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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113B LEU 3.1 17.8 + - - +
114B GLU* 3.0 40.1 + - - +
115B ASN 3.0 0.6 - - - -
116B ILE* 1.3 75.1 - - - +
118B SER* 1.3 56.3 + - - +
120B GLU* 3.3 13.3 + - + +
121B LYS* 2.8 39.1 + - - +
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Residues in contact with SER 118 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B GLU* 2.8 19.7 + - - +
115B ASN* 3.0 9.6 + - - -
117B ARG* 1.3 75.8 - - - +
119B ILE* 1.3 60.1 + - - +
121B LYS* 3.3 8.1 + - - +
122B LEU* 2.8 37.0 + - - +
178C LYS* 3.5 31.4 - - - -
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Residues in contact with ILE 119 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115B ASN 2.8 20.1 + - - +
116B ILE* 4.0 9.6 - - + +
118B SER* 1.3 73.5 - - - +
120B GLU* 1.3 54.8 + - - +
122B LEU* 2.8 14.6 + - + +
123B ILE* 2.8 46.8 + - + +
175C ILE* 4.3 25.4 - - + +
178C LYS* 4.1 16.8 - - + -
179C ALA* 4.2 18.6 - - + +
182C ILE* 4.0 26.9 - - + -
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Residues in contact with GLU 120 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116B ILE* 3.1 29.7 + - - +
117B ARG* 3.4 14.5 - - + +
119B ILE* 1.3 80.7 - - + +
121B LYS* 1.3 61.4 + - - +
123B ILE* 3.3 11.6 + - + +
124B GLN* 3.1 25.8 + - - +
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Residues in contact with LYS 121 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117B ARG* 2.8 23.7 + - - +
118B SER* 3.7 8.3 - - - +
120B GLU* 1.3 73.2 - - - +
122B LEU* 1.3 58.6 + - + +
124B GLN* 3.1 28.0 - - + +
125B ASN* 3.3 7.3 + - - +
128B ARG* 4.2 5.9 + - - +
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Residues in contact with LEU 122 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B SER* 2.8 23.7 + - - +
119B ILE* 2.8 9.3 + - - +
121B LYS* 1.3 72.7 - - - +
123B ILE* 1.3 60.2 + - - +
124B GLN 3.1 1.8 - - - -
125B ASN* 2.9 31.9 + - - +
126B ILE* 3.1 9.2 + - - +
171C VAL* 3.9 26.7 - - + +
174C GLN* 3.7 58.8 - - + +
175C ILE* 3.9 16.2 - - + +
178C LYS* 4.8 8.5 - - + +
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Residues in contact with ILE 123 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B ILE* 2.8 43.2 + - + +
120B GLU* 3.6 13.7 - - + +
122B LEU* 1.3 68.7 - - - +
124B GLN* 1.3 66.9 + - - +
126B ILE* 3.4 13.7 + - + +
127B MET* 3.0 31.7 + - + +
175C ILE* 4.4 10.7 - - + +
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Residues in contact with GLN 124 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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120B GLU 3.1 17.0 + - - +
121B LYS* 3.1 18.8 - - + +
123B ILE* 1.3 77.1 - - - +
125B ASN* 1.3 62.2 + - - +
127B MET* 3.0 51.1 + - - +
128B ARG* 3.1 26.1 + - - +
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Residues in contact with ASN 125 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121B LYS 3.3 4.2 + - - +
122B LEU* 2.9 22.5 + - + +
124B GLN* 1.3 79.2 - - - +
126B ILE* 1.3 59.5 + - - +
128B ARG* 3.1 38.1 + - - +
129B ILE* 3.1 22.4 + - - +
167C GLU* 3.6 21.7 + - - +
171C VAL* 3.4 26.9 - - + +
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Residues in contact with ILE 126 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122B LEU 3.1 5.7 + - - +
123B ILE* 3.8 11.4 - - + +
124B GLN 3.2 0.6 - - - -
125B ASN* 1.3 75.7 - - - +
127B MET* 1.3 54.5 + - + +
129B ILE* 2.9 14.8 + - + +
130B ALA* 2.7 36.9 + - + +
168C THR* 5.2 13.7 - - + +
171C VAL* 3.5 24.9 - - + -
172C THR* 4.5 17.0 - - + +
175C ILE* 3.6 30.7 - - + -
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Residues in contact with MET 127 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123B ILE* 3.0 24.2 - - + +
124B GLN* 3.0 43.0 + - - +
126B ILE* 1.3 73.7 - - + +
128B ARG* 1.3 61.1 + - - +
130B ALA* 3.2 10.6 + - - +
131B ARG* 2.9 28.9 + - - +
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Residues in contact with ARG 128 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121B LYS* 4.2 6.5 + - - +
124B GLN* 3.1 20.1 + - - +
125B ASN* 3.1 58.1 + - - +
127B MET* 1.3 76.7 - - - +
129B ILE* 1.3 64.1 + - + +
131B ARG* 3.0 29.2 + - + +
132B GLU* 3.2 15.0 + - + +
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Residues in contact with ILE 129 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125B ASN* 3.1 20.0 + - - +
126B ILE* 2.9 16.3 + - + +
128B ARG* 1.3 78.2 - - + +
130B ALA* 1.3 58.3 + - - +
132B GLU* 2.8 33.7 + - - +
133B THR* 2.9 22.8 + - - +
164C LEU* 4.1 19.3 - - + -
167C GLU* 3.7 42.8 - - + +
168C THR* 3.8 33.4 - - - +
171C VAL* 4.9 2.7 - - + -
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Residues in contact with ALA 130 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126B ILE* 2.7 20.4 + - + +
127B MET* 3.4 14.8 - - - +
129B ILE* 1.3 75.5 - - - +
131B ARG* 1.3 59.3 + - - +
133B THR* 3.6 9.7 - - - +
134B ASN* 3.2 22.0 + - - +
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Residues in contact with ARG 131 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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568A SER* 2.3 39.8 + - - -
609A GLU* 4.7 12.9 + - - +
610A MET 5.0 0.6 + - - -
611A GLU* 3.2 37.9 + - - +
127B MET 2.9 12.7 + - - +
128B ARG* 3.0 19.4 + - - +
129B ILE 2.9 0.2 + - - -
130B ALA* 1.3 75.1 - - - +
132B GLU* 1.3 72.5 + - - +
133B THR 3.2 0.3 + - - -
134B ASN* 3.2 6.7 + - - +
135B ILE* 3.2 33.9 + - - +
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Residues in contact with GLU 132 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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128B ARG* 3.7 15.9 - - + +
129B ILE* 2.8 14.4 + - - +
131B ARG* 1.3 82.4 - - - +
133B THR* 1.3 57.0 + - - +
135B ILE* 3.7 8.2 + - - +
136B LEU* 3.0 27.5 + - - +
164C LEU* 4.3 27.9 - - + +
167C GLU* 5.5 2.4 - - - +
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Residues in contact with THR 133 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129B ILE* 2.9 21.3 + - - +
130B ALA* 3.6 11.3 - - - +
131B ARG 3.1 0.2 - - - -
132B GLU* 1.3 75.7 - - - +
134B ASN* 1.3 56.8 + - - +
136B LEU* 3.0 8.8 + - + +
137B ALA* 2.8 36.0 + - + +
164C LEU* 3.4 20.8 - - + +
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Residues in contact with ASN 134 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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611A GLU* 6.0 0.8 + - - -
629A LEU* 4.4 15.8 + - - +
130B ALA 3.2 13.6 + - - +
131B ARG* 3.2 6.1 + - - +
133B THR* 1.3 77.1 - - - +
135B ILE* 1.3 71.1 + - - +
137B ALA* 3.6 9.1 + - - +
138B LEU* 3.2 39.4 + - - +
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Residues in contact with ILE 135 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
566A ILE* 3.3 37.2 - - + +
567A LEU* 4.3 7.4 - - - +
568A SER* 4.2 12.1 - - - -
611A GLU* 3.9 31.9 - - + +
629A LEU* 5.0 3.6 - - + -
131B ARG* 3.2 29.9 + - + +
132B GLU* 3.8 10.1 - - - +
134B ASN* 1.3 81.9 - - - +
136B LEU* 1.3 54.5 + - - +
138B LEU* 3.0 21.2 + - - +
139B ASN* 2.6 27.0 + - - +
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Residues in contact with LEU 136 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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132B GLU 3.0 13.9 + - - +
133B THR* 3.0 11.2 + - + +
135B ILE* 1.3 71.5 - - - +
137B ALA* 1.3 67.0 + - - +
138B LEU 3.0 1.6 + - - -
139B ASN* 3.1 9.9 + - + +
140B ALA* 2.9 25.8 + - - +
157C VAL* 3.7 37.5 - - + -
160C GLU* 3.6 30.5 - - + -
161C VAL* 3.9 17.7 - - + +
164C LEU* 3.8 22.7 - - + -
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Residues in contact with ALA 137 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133B THR* 2.8 20.4 + - + +
134B ASN* 3.7 12.1 - - - +
136B LEU* 1.3 73.1 - - - +
138B LEU* 1.3 57.0 + - + +
140B ALA* 3.5 7.9 - - - +
141B THR* 2.7 34.0 + - - -
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Residues in contact with LEU 138 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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547A LEU* 4.6 10.1 - - + -
566A ILE* 4.0 17.0 - - + -
629A LEU* 4.3 28.3 - - + +
631A GLY* 4.4 4.9 - - - -
632A GLN* 3.9 35.6 - - + +
134B ASN* 3.2 33.0 + - - +
135B ILE* 3.0 13.2 + - - +
137B ALA* 1.3 77.1 - - + +
139B ASN* 1.3 67.3 + - - +
141B THR* 3.1 9.2 + - - +
142B ILE* 3.0 26.6 + - + +
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Residues in contact with ASN 139 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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565A THR* 3.3 14.8 + - - -
566A ILE* 2.9 45.5 + - - +
135B ILE* 2.6 33.7 + - - +
136B LEU* 3.7 11.1 - - + +
138B LEU* 1.3 74.7 - - - +
140B ALA* 1.3 52.8 + - - +
142B ILE* 2.7 15.2 + - - +
143B GLU* 2.7 35.8 + - - +
157C VAL* 5.7 1.8 - - + -
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Residues in contact with ALA 140 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B LEU 2.9 17.5 + - - +
137B ALA* 3.5 10.8 - - - +
139B ASN* 1.3 75.3 - - - +
141B THR* 1.3 52.5 + - - +
143B GLU* 3.3 7.5 + - - +
144B ALA* 2.7 35.9 + - - +
154C PHE* 4.3 6.8 - - + -
157C VAL* 4.3 29.2 - - + +
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Residues in contact with THR 141 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545A GLN* 5.6 0.7 - - - +
560A ILE* 4.5 1.5 - - - +
632A GLN* 4.1 35.3 - - + +
137B ALA 2.7 19.8 + - - -
138B LEU* 3.1 10.2 + - - +
140B ALA* 1.3 74.2 - - - +
142B ILE* 1.3 65.4 + - - +
144B ALA* 3.5 8.8 - - + +
145B ALA* 3.1 22.0 + - - +
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Residues in contact with ILE 142 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547A LEU* 5.4 2.2 - - + -
560A ILE* 3.5 39.9 - - + +
563A ILE* 3.7 40.2 - - + +
564A ASP 5.1 0.4 - - - +
565A THR* 5.3 1.6 - - - -
566A ILE* 3.9 21.1 - - + -
632A GLN* 5.7 0.4 - - + -
138B LEU* 3.2 15.0 - - + +
139B ASN* 2.7 20.2 + - - +
141B THR* 1.3 71.8 - - - +
143B GLU* 1.3 56.3 + - - +
145B ALA* 2.9 6.8 + - - +
146B ARG* 2.9 50.0 + - - +
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Residues in contact with GLU 143 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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139B ASN 2.7 14.4 + - - +
140B ALA* 3.3 12.8 - - - +
142B ILE* 1.3 73.4 - - - +
144B ALA* 1.3 63.3 + - - +
146B ARG* 3.1 37.3 + - - +
147B ALA* 2.8 22.7 + - - +
149C GLU 4.9 0.8 - - - +
150C ALA* 3.6 35.0 - - - +
153C GLY* 3.3 23.3 - - - -
154C PHE* 4.2 13.0 - - + +
157C VAL* 5.6 2.4 - - + +
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Residues in contact with ALA 144 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140B ALA 2.7 21.4 + - - +
141B THR* 3.5 13.2 - - + +
143B GLU* 1.3 70.6 - - - +
145B ALA* 1.3 59.0 + - - +
147B ALA* 3.0 5.0 + - - +
148B GLY* 2.8 27.0 + - - -
154C PHE* 3.8 19.2 - - + -
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Residues in contact with ALA 145 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545A GLN* 3.5 34.3 + - - +
560A ILE* 4.4 10.3 - - + -
141B THR 3.1 10.4 + - - +
142B ILE 2.9 9.5 + - - +
144B ALA* 1.3 80.3 - - - +
146B ARG* 1.3 62.0 + - - +
148B GLY* 3.5 2.6 + - - +
149B GLU* 3.1 31.1 + - + +
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Residues in contact with ARG 146 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563A ILE 4.1 6.3 + - - -
564A ASP* 3.4 31.5 + - - +
616A ARG* 4.8 11.0 - - - +
142B ILE* 2.9 38.4 + - + +
143B GLU* 3.3 35.8 + - - +
145B ALA* 1.3 78.6 - - - +
147B ALA* 1.3 60.1 + - - +
149B GLU* 3.1 11.4 + - + +
150B ALA* 3.1 20.4 + - - +
146C ARG* 5.4 14.8 - - + +
150C ALA* 5.0 5.6 - - + +
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Residues in contact with ALA 147 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143B GLU 2.8 12.3 + - - +
144B ALA 3.3 8.5 - - - +
146B ARG* 1.3 71.8 - - - +
148B GLY* 1.3 61.3 + - - +
149B GLU 3.0 1.3 - - - -
150B ALA* 2.9 7.6 + - - +
151B GLY* 2.8 28.4 + - - -
147C ALA* 5.6 1.7 - - - +
150C ALA* 3.8 22.6 - - + +
154C PHE* 4.0 17.9 - - + -
----------------------------------------------------------
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Residues in contact with GLY 148 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144B ALA 2.8 18.5 + - - -
145B ALA* 3.8 4.3 - - - -
147B ALA* 1.3 71.9 - - - +
149B GLU* 1.3 64.8 + - - +
151B GLY* 4.0 1.5 - - - -
152B LYS* 3.3 24.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 149 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545A GLN* 5.1 8.2 + - - +
145B ALA 3.1 18.0 + - - +
146B ARG* 3.3 10.8 - - + +
147B ALA 3.0 0.8 - - - -
148B GLY* 1.3 76.8 - - - +
150B ALA* 1.3 61.2 + - - +
152B LYS* 3.8 14.1 - - - +
153B GLY* 2.9 27.7 + - - -
143C GLU* 3.9 2.5 - - - +
146C ARG* 6.3 1.8 - - - -
----------------------------------------------------------
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Residues in contact with ALA 150 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146B ARG 3.1 8.7 + - - +
147B ALA* 2.9 8.0 + - - +
149B GLU* 1.3 79.9 - - - +
151B GLY* 1.3 53.2 + - - +
153B GLY 3.0 1.0 + - - -
154B PHE* 2.8 36.7 + - - +
143C GLU* 3.3 37.3 - - - +
146C ARG* 4.2 12.3 - - + +
147C ALA* 3.6 23.6 - - + +
----------------------------------------------------------
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Residues in contact with GLY 151 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147B ALA 2.8 14.8 + - - -
148B GLY* 4.1 2.0 - - - -
150B ALA* 1.3 80.5 - - - +
152B LYS* 1.3 60.7 + - - +
153B GLY 2.9 0.3 + - - -
154B PHE* 2.9 13.8 + - - +
155B MET* 3.0 23.1 + - - +
147C ALA* 5.1 3.9 - - - +
----------------------------------------------------------
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Residues in contact with LYS 152 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148B GLY 3.3 18.1 + - - +
149B GLU* 4.1 14.1 - - - +
151B GLY* 1.3 73.0 - - - +
153B GLY* 1.3 59.1 + - - +
155B MET* 4.1 14.8 - - + +
156B ILE* 3.1 57.4 + - + +
----------------------------------------------------------
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Residues in contact with GLY 153 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149B GLU 2.9 15.9 + - - -
150B ALA 3.5 3.8 - - - -
151B GLY 2.9 0.2 + - - -
152B LYS* 1.3 75.1 - - - +
154B PHE* 1.3 59.8 + - - +
156B ILE* 3.4 5.3 + - - +
157B VAL* 3.0 30.4 + - - +
143C GLU* 3.6 22.3 - - - +
----------------------------------------------------------
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Residues in contact with PHE 154 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150B ALA 2.8 12.8 + - - +
151B GLY* 3.2 11.9 - - - +
153B GLY* 1.3 72.6 - - - +
155B MET* 1.3 59.7 + - + +
157B VAL* 3.1 6.3 - - - +
158B ALA* 2.7 45.6 + - + +
140C ALA* 3.5 42.0 - - + -
143C GLU* 4.0 7.5 - - + +
144C ALA* 4.1 21.1 - - + -
----------------------------------------------------------
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Residues in contact with MET 155 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151B GLY* 3.0 21.2 + - - +
152B LYS* 4.2 12.1 - - + +
154B PHE* 1.3 82.3 - - + +
156B ILE* 1.3 63.9 + - + +
158B ALA* 3.3 7.7 + - + +
159B ASN* 3.0 27.0 + - - +
----------------------------------------------------------
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Residues in contact with ILE 156 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152B LYS* 3.1 51.0 + - + +
153B GLY* 3.7 4.9 - - - +
154B PHE 3.2 0.8 - - - -
155B MET* 1.3 79.9 - - + +
157B VAL* 1.3 61.4 + - - +
159B ASN* 3.8 8.0 + - - +
160B GLU* 3.5 20.3 + - + +
----------------------------------------------------------
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Residues in contact with VAL 157 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153B GLY 3.0 16.3 + - - +
154B PHE* 3.1 19.5 - - - +
156B ILE* 1.3 75.3 - - - +
158B ALA* 1.3 68.3 + - - +
160B GLU* 3.0 12.7 + - - +
161B VAL* 3.1 12.5 + - + +
136C LEU* 3.3 51.4 - - + +
139C ASN* 4.1 8.5 - - + +
140C ALA* 3.7 28.5 - - + +
143C GLU* 4.9 2.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA 158 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154B PHE* 2.7 35.3 + - + +
155B MET* 3.3 9.6 + - + +
157B VAL* 1.3 71.3 - - - +
159B ASN* 1.3 60.2 + - - +
160B GLU 2.8 6.8 + - - -
161B VAL* 2.9 19.6 + - - +
162B GLN* 3.2 10.3 + - - +
140C ALA* 5.6 3.1 - - - -
----------------------------------------------------------
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Residues in contact with ASN 159 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155B MET 3.0 13.5 + - - +
156B ILE* 4.2 7.3 + - - +
158B ALA* 1.3 77.4 - - - +
160B GLU* 1.3 63.9 + - - +
162B GLN* 3.4 18.5 - - - +
163B ASN* 3.2 44.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 160 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156B ILE* 3.5 14.1 + - + +
157B VAL* 3.0 11.6 + - - +
158B ALA 2.8 1.4 + - - -
159B ASN* 1.3 83.4 - - - +
161B VAL* 1.3 59.7 + - - +
162B GLN 3.3 0.2 - - - -
163B ASN* 3.9 9.2 - - + +
164B LEU* 3.0 45.4 + - - +
132C GLU* 4.8 5.4 - - - +
136C LEU* 3.5 31.5 - - + +
----------------------------------------------------------
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Residues in contact with VAL 161 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157B VAL* 3.1 14.7 + - + +
158B ALA* 2.9 9.2 + - - +
160B GLU* 1.3 72.9 - - - +
162B GLN* 1.3 67.9 + - - +
164B LEU* 3.2 6.3 + - - +
165B SER* 3.0 30.2 + - - +
133C THR* 5.3 13.7 - - + +
136C LEU* 3.7 33.4 - - + +
137C ALA* 4.4 6.3 - - + +
140C ALA* 5.2 4.5 - - + -
----------------------------------------------------------
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Residues in contact with GLN 162 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158B ALA 3.2 6.3 + - - +
159B ASN* 3.4 23.5 - - - +
161B VAL* 1.3 82.8 - - - +
163B ASN* 1.3 77.2 + - - +
165B SER* 3.1 14.0 + - - -
166B ASN* 3.1 30.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN 163 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159B ASN* 3.2 37.9 + - - +
160B GLU* 3.4 11.2 + - + +
161B VAL 3.3 0.4 - - - -
162B GLN* 1.3 90.9 + - - +
164B LEU* 1.3 65.5 + - + +
166B ASN* 3.8 8.3 + - - +
167B GLU* 3.3 21.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 164 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160B GLU* 3.0 29.6 + - - +
161B VAL* 3.7 5.8 - - - +
163B ASN* 1.3 78.6 - - + +
165B SER* 1.3 53.9 + - - +
167B GLU* 2.8 23.5 + - - +
168B THR* 2.8 36.4 + - - -
128C ARG* 5.7 0.7 - - - +
129C ILE* 3.5 24.6 - - + +
132C GLU* 3.9 35.7 - - + +
133C THR* 3.0 32.1 - - - +
136C LEU* 4.1 9.6 - - + -
----------------------------------------------------------
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Residues in contact with SER 165 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161B VAL* 3.0 21.7 + - - +
162B GLN* 3.3 11.6 - - - -
164B LEU* 1.3 72.7 - - - +
166B ASN* 1.3 68.7 + - - +
168B THR* 3.1 9.7 + - - -
169B ASN* 2.9 22.8 + - - +
133C THR* 5.2 0.2 + - - -
----------------------------------------------------------
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Residues in contact with ASN 166 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162B GLN* 3.1 38.1 + - - +
163B ASN* 4.0 8.4 + - - +
165B SER* 1.3 80.4 - - - +
167B GLU* 1.3 56.2 + - - +
169B ASN* 3.2 11.6 + - - +
170B GLU* 3.0 28.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 167 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163B ASN 3.3 12.2 + - - +
164B LEU* 2.8 29.6 + - - +
166B ASN* 1.3 73.6 - - - +
168B THR* 1.3 58.3 + - - -
169B ASN 2.9 5.2 - - - -
170B GLU* 3.3 5.8 + - + +
171B VAL* 3.0 36.3 + - + +
125C ASN* 4.4 3.3 + - - +
128C ARG* 3.5 22.3 + - - -
129C ILE* 3.3 27.3 - - + +
----------------------------------------------------------
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Residues in contact with THR 168 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164B LEU* 2.8 21.2 + - - +
165B SER* 3.1 8.7 + - - -
167B GLU* 1.3 71.4 - - - +
169B ASN* 1.3 59.9 + - - +
171B VAL* 4.1 3.9 - - - +
172B THR* 2.9 29.1 + - - +
126C ILE* 4.2 30.7 - - + +
129C ILE* 4.1 20.6 + - + +
130C ALA* 5.2 6.3 - - + +
133C THR* 5.2 1.6 + - - -
----------------------------------------------------------
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Residues in contact with ASN 169 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165B SER 2.9 11.8 + - - +
166B ASN* 3.2 18.2 + - - +
167B GLU 2.9 0.8 - - - -
168B THR* 1.3 74.1 - - - +
170B GLU* 1.3 68.5 + - - +
171B VAL 3.0 1.3 - - - -
172B THR* 2.9 18.3 + - - -
173B LYS* 3.0 35.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 170 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
166B ASN 3.0 13.9 + - - +
167B GLU* 3.3 6.9 + - + +
169B ASN* 1.3 81.2 + - - +
171B VAL* 1.3 61.7 + - + +
173B LYS* 3.2 35.7 + - - +
174B GLN* 3.2 38.5 + - + +
----------------------------------------------------------
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Residues in contact with VAL 171 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167B GLU* 3.0 25.2 + - + +
168B THR* 4.4 0.9 - - - +
170B GLU* 1.3 78.0 - - + +
172B THR* 1.3 66.2 + - - +
173B LYS 3.1 0.2 - - - -
174B GLN* 3.0 16.3 + - - +
175B ILE* 2.9 22.5 + - + +
122C LEU* 3.9 28.9 - - + +
125C ASN* 3.9 21.5 - - - +
126C ILE* 3.4 31.0 - - + +
129C ILE* 4.5 8.3 - - + -
----------------------------------------------------------
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Residues in contact with THR 172 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168B THR* 2.9 22.1 + - - +
169B ASN* 2.9 7.8 + - - -
171B VAL* 1.3 77.9 - - - +
173B LYS* 1.3 62.3 + - - +
175B ILE* 3.3 8.9 + - + +
176B VAL* 3.1 26.9 + - + +
126C ILE* 3.4 18.4 - - + +
----------------------------------------------------------
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Residues in contact with LYS 173 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169B ASN* 3.0 37.0 + - - +
170B GLU* 3.2 39.4 + - - +
171B VAL 3.1 0.2 - - - -
172B THR* 1.3 78.5 - - + +
174B GLN* 1.3 62.0 + - + +
176B VAL* 3.2 13.0 + - + +
177B GLU* 3.2 20.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 174 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170B GLU* 3.2 30.1 + - + +
171B VAL* 3.0 16.0 + - - +
173B LYS* 1.3 75.0 - - + +
175B ILE* 1.3 60.8 + - - +
177B GLU* 3.2 11.9 + - - +
178B LYS* 2.9 30.0 + - - +
122C LEU* 3.4 33.0 - - + +
125C ASN* 5.8 0.2 + - - -
----------------------------------------------------------
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Residues in contact with ILE 175 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171B VAL* 2.9 17.2 + - + +
172B THR* 3.3 10.7 + - + +
174B GLN* 1.3 74.7 - - - +
176B VAL* 1.3 55.9 + - + +
178B LYS* 3.1 1.9 + - - +
179B ALA* 2.7 37.5 + - + +
119C ILE* 3.7 18.3 - - + +
122C LEU* 4.1 22.9 - - + -
123C ILE* 4.2 30.1 - - + +
126C ILE* 3.5 28.9 - - + -
----------------------------------------------------------
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Residues in contact with VAL 176 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172B THR* 3.1 17.9 + - + +
173B LYS* 3.4 14.4 - - + +
174B GLN 3.2 0.2 - - - -
175B ILE* 1.3 78.4 - - + +
177B GLU* 1.3 63.5 + - + +
179B ALA* 3.4 6.2 + - - +
180B ARG* 3.2 53.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 177 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173B LYS 3.2 9.1 + - - +
174B GLN* 3.7 12.3 - - - +
175B ILE 3.2 0.2 - - - -
176B VAL* 1.3 82.6 - - + +
178B LYS* 1.3 64.2 + - - +
180B ARG* 3.3 14.4 + - + +
181B GLU* 3.1 43.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS 178 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174B GLN 2.9 17.5 + - - +
175B ILE 3.1 1.3 + - - +
177B GLU* 1.3 74.8 - - - +
179B ALA* 1.3 53.8 + - - +
181B GLU* 2.8 40.0 + - - +
182B ILE* 2.7 37.6 + - - +
115C ASN* 3.5 27.1 - - - +
118C SER* 3.4 31.3 + - - +
119C ILE* 3.5 21.1 - - + -
122C LEU* 4.2 12.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 179 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175B ILE* 2.7 25.0 + - + +
176B VAL* 3.8 6.3 - - - +
178B LYS* 1.3 72.9 - - - +
180B ARG* 1.3 61.7 + - - +
182B ILE* 3.8 16.2 + - + +
183B LEU* 3.4 17.0 + - - +
119C ILE* 4.1 7.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 180 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176B VAL* 3.2 40.3 + - - +
177B GLU* 3.4 16.2 - - + +
178B LYS 3.0 0.2 - - - -
179B ALA* 1.3 76.5 - - - +
181B GLU* 1.3 57.8 + - + +
183B LEU* 2.7 30.1 + - - +
184B GLU* 2.9 12.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 181 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177B GLU* 3.1 38.7 - - + +
178B LYS* 2.8 39.2 + - - +
180B ARG* 1.3 77.4 - - + +
182B ILE* 1.3 61.3 + - - +
184B GLU* 3.9 7.4 - - - +
185B SER* 2.9 30.7 + - - -
111C GLU* 5.7 0.3 - - - +
115C ASN* 3.9 17.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE 182 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178B LYS 2.7 18.0 + - - +
179B ALA* 3.8 12.3 - - + +
181B GLU* 1.3 71.1 - - - +
183B LEU* 1.3 55.3 + - + +
185B SER* 3.3 3.1 + - - -
186B SER* 2.7 50.2 + - - +
112C THR* 4.4 6.2 + - - +
115C ASN* 3.8 27.8 - - + +
116C ILE* 4.2 16.2 - - + +
119C ILE* 3.3 41.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 183 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
179B ALA 3.4 10.6 + - - +
180B ARG* 2.7 19.6 + - - +
182B ILE* 1.3 77.6 - - - +
184B GLU* 1.3 60.5 + - - +
186B SER* 3.5 8.4 + - - -
187B GLN* 3.3 43.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU 184 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180B ARG 2.9 12.2 + - - +
181B GLU* 4.1 7.2 - - - +
183B LEU* 1.3 77.7 - - - +
185B SER* 1.3 62.4 + - - +
187B GLN* 3.0 27.3 + - - +
188B ARG* 3.0 65.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 185 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181B GLU 2.9 19.8 + - - -
182B ILE 3.7 1.3 - - - -
184B GLU* 1.3 77.0 - - - +
186B SER* 1.3 62.0 + - - +
187B GLN 3.2 0.7 + - - -
188B ARG* 4.7 0.4 - - - -
189B SER* 3.4 18.7 + - - -
108C GLN* 3.5 25.6 + - - +
111C GLU* 3.7 14.2 + - - +
112C THR* 3.5 31.7 - - - -
115C ASN* 3.0 14.3 + - - -
----------------------------------------------------------
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Residues in contact with SER 186 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182B ILE* 2.7 37.6 + - - +
183B LEU* 3.6 15.6 - - - +
184B GLU 3.2 0.2 - - - -
185B SER* 1.3 72.9 - - - +
187B GLN* 1.3 59.5 + - - +
189B SER* 2.8 21.0 + - - -
190B LEU* 4.1 7.6 - - - +
112C THR* 3.8 13.2 + - - -
----------------------------------------------------------
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Residues in contact with GLN 187 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183B LEU* 3.3 33.9 + - + +
184B GLU* 3.0 23.2 + - - +
186B SER* 1.3 77.8 - - - +
188B ARG* 1.3 58.4 + - + +
189B SER 3.0 5.2 - - - -
190B LEU* 2.8 40.5 + - + +
191B GLU* 3.8 6.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 188 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184B GLU* 3.0 53.4 + - - +
185B SER 3.6 0.2 + - - -
187B GLN* 1.3 74.6 - - + +
189B SER* 1.3 61.0 + - - +
190B LEU 3.2 0.2 - - - -
191B GLU* 3.4 42.0 + - - +
108C GLN* 3.3 49.2 + - + +
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Residues in contact with SER 189 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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185B SER 3.4 11.4 + - - -
186B SER* 2.8 24.2 + - - -
187B GLN 3.0 0.8 - - - -
188B ARG* 1.3 78.2 - - - +
190B LEU* 1.3 68.8 + - - +
191B GLU 3.2 6.6 + - - +
108C GLN* 3.7 10.3 - - - +
109C ILE* 4.2 24.5 - - - -
112C THR* 5.2 2.0 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il