Contacts of the helix formed by residues 109 - 190 (chain C) in PDB entry 4JPB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 109 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189B SER* 4.2 12.1 - - - -
108C GLN* 1.3 77.5 - - - +
110C GLY* 1.3 69.3 + - - +
112C THR* 3.2 18.7 - - + +
113C LEU* 3.2 28.7 - - + +
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Residues in contact with GLY 110 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C GLN 3.3 0.4 - - - -
109C ILE* 1.3 86.2 - - - +
111C GLU* 1.3 62.6 + - - +
113C LEU* 3.4 9.8 + - - +
114C GLU* 3.4 22.4 + - - +
117C ARG* 5.3 0.5 + - - -
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Residues in contact with GLU 111 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181B GLU* 5.7 0.3 - - - +
185B SER* 3.7 15.1 + - - +
108C GLN* 3.2 37.1 + - + +
110C GLY* 1.3 73.4 - - - +
112C THR* 1.3 67.2 + - - +
114C GLU* 3.0 9.8 + - + +
115C ASN* 2.9 29.5 + - - +
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Residues in contact with THR 112 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182B ILE* 4.4 4.2 + - - +
185B SER* 3.5 33.1 - - - +
186B SER* 3.8 16.5 + - - +
189B SER* 5.2 2.5 - - - -
108C GLN 3.0 19.0 + - - +
109C ILE* 3.2 27.1 - - + +
111C GLU* 1.3 73.6 - - - +
113C LEU* 1.3 52.6 + - + +
115C ASN* 3.0 6.6 + - - +
116C ILE* 2.7 46.0 + - - +
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Residues in contact with LEU 113 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109C ILE* 3.2 32.3 - - + +
110C GLY* 3.4 11.0 + - - +
111C GLU 3.2 0.6 - - - -
112C THR* 1.3 80.6 - - + +
114C GLU* 1.3 57.5 + - - +
116C ILE* 3.4 20.8 + - + +
117C ARG* 3.1 50.2 + - - +
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Residues in contact with GLU 114 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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110C GLY 3.4 9.8 + - - +
111C GLU* 3.0 12.6 + - + +
113C LEU* 1.3 75.4 - - - +
115C ASN* 1.3 61.9 + - - +
117C ARG* 2.3 41.9 + - - +
118C SER* 2.9 28.8 + - - -
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Residues in contact with ASN 115 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178B LYS* 3.5 26.4 - - + +
181B GLU* 3.5 20.7 + - - +
182B ILE* 3.8 18.4 - - + -
185B SER* 3.0 27.3 + - - -
111C GLU* 2.9 25.2 + - - +
112C THR* 3.0 8.7 + - - +
114C GLU* 1.3 75.9 - - - +
116C ILE* 1.3 63.4 + - - +
118C SER* 3.3 6.0 + - - -
119C ILE* 2.9 27.5 + - - +
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Residues in contact with ILE 116 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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182B ILE* 4.2 22.2 - - + +
112C THR* 2.7 28.6 + - - +
113C LEU* 3.5 24.5 - - + +
115C ASN* 1.3 72.1 - - - +
117C ARG* 1.3 67.2 + - + +
119C ILE* 3.5 5.1 + - + +
120C GLU* 3.1 37.4 + - - +
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Residues in contact with ARG 117 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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110C GLY 5.3 0.4 + - - -
113C LEU* 3.1 35.3 + - - +
114C GLU* 2.3 60.2 + - - +
116C ILE* 1.3 74.7 - - + +
118C SER* 1.3 58.7 + - - +
120C GLU* 2.8 30.9 + - - +
121C LYS* 3.0 13.7 + - - +
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Residues in contact with SER 118 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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178B LYS* 3.4 32.1 + - - +
114C GLU 2.9 19.3 + - - -
115C ASN* 3.6 6.1 - - - -
117C ARG* 1.3 71.8 - - - +
119C ILE* 1.3 60.6 + - - +
121C LYS* 3.5 12.8 - - - +
122C LEU* 3.2 28.8 + - - +
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Residues in contact with ILE 119 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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175B ILE* 3.7 36.8 - - + +
178B LYS* 3.5 24.7 - - + +
179B ALA* 4.1 7.0 - - + +
182B ILE* 3.3 29.2 - - + -
115C ASN 2.9 12.7 + - - +
116C ILE* 3.6 8.3 - - + +
118C SER* 1.3 74.0 - - - +
120C GLU* 1.3 72.8 + - + +
122C LEU* 2.9 10.1 + - + +
123C ILE* 2.9 34.7 + - + +
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Residues in contact with GLU 120 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116C ILE* 3.1 31.3 + - - +
117C ARG* 2.8 14.3 + - - +
119C ILE* 1.3 84.8 - - + +
121C LYS* 1.3 60.2 - - - +
123C ILE* 3.3 17.6 - - + +
124C GLN* 3.2 24.2 + - - +
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Residues in contact with LYS 121 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117C ARG 3.0 10.2 + - - +
118C SER* 3.5 15.5 - - - +
120C GLU* 1.3 74.2 - - - +
122C LEU* 1.3 62.0 + - + +
124C GLN* 2.9 10.5 + - - +
125C ASN* 2.9 27.2 + - + +
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Residues in contact with LEU 122 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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171B VAL* 3.9 16.7 - - + +
174B GLN* 3.4 55.0 - - + +
175B ILE* 4.0 18.6 - - + +
178B LYS* 4.2 16.6 - - + -
118C SER* 3.2 16.8 + - - +
119C ILE* 2.9 9.2 + - - +
121C LYS* 1.3 79.4 - - + +
123C ILE* 1.3 58.0 + - - +
124C GLN 3.1 0.2 + - - -
125C ASN* 3.1 17.1 + - + +
126C ILE* 2.9 27.7 + - - +
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Residues in contact with ILE 123 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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175B ILE* 4.2 19.0 - - + +
119C ILE* 2.9 20.4 + - + +
120C GLU* 3.3 24.0 - - + +
121C LYS 3.2 0.2 - - - -
122C LEU* 1.3 76.4 - - - +
124C GLN* 1.3 73.8 + - - +
126C ILE* 3.7 12.3 - - + +
127C MET* 3.3 24.9 + - - +
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Residues in contact with GLN 124 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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120C GLU* 3.2 9.4 + - - +
121C LYS* 2.9 13.4 + - + +
123C ILE* 1.3 95.8 + - - +
125C ASN* 1.3 67.4 + - - +
126C ILE 3.0 2.2 + - - -
127C MET* 3.2 20.5 + - - +
128C ARG* 3.0 22.8 + - - +
131C ARG* 5.4 3.3 + - - -
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Residues in contact with ASN 125 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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167B GLU* 4.9 2.8 + - - -
171B VAL* 3.9 25.2 - - + +
121C LYS* 2.9 13.0 + - + +
122C LEU* 3.3 21.1 - - + +
124C GLN* 1.3 75.7 - - - +
126C ILE* 1.3 56.2 + - - -
128C ARG* 2.8 42.3 + - - +
129C ILE* 2.9 23.2 - - - +
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Residues in contact with ILE 126 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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168B THR* 4.2 20.9 - - + +
171B VAL* 3.4 26.7 - - + -
172B THR* 3.4 27.1 - - + +
175B ILE* 3.5 26.7 - - + -
122C LEU 2.9 10.5 + - - +
123C ILE* 3.9 12.3 - - + +
124C GLN 3.0 0.4 - - - -
125C ASN* 1.3 74.8 - - - +
127C MET* 1.3 76.2 + - - +
128C ARG 3.0 1.9 + - - -
129C ILE* 3.2 6.5 + - + +
130C ALA* 3.0 23.6 + - + +
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Residues in contact with MET 127 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123C ILE* 3.3 14.7 + - - +
124C GLN* 3.2 21.7 + - - +
126C ILE* 1.3 86.2 - - - +
128C ARG* 1.3 62.0 + - - +
130C ALA* 3.2 21.6 - - + +
131C ARG* 3.3 27.0 + - - +
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Residues in contact with ARG 128 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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164B LEU* 5.7 0.4 - - - +
167B GLU* 3.5 24.2 + - - -
124C GLN 3.0 11.8 + - - +
125C ASN* 2.8 36.9 + - - +
127C MET* 1.3 71.8 - - - +
129C ILE* 1.3 68.6 + - - +
130C ALA 3.1 1.1 - - - -
131C ARG* 2.8 45.1 + - - +
132C GLU* 2.9 48.3 + - + +
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Residues in contact with ILE 129 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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164B LEU* 3.5 45.3 - - + +
167B GLU* 3.3 39.9 - - + +
168B THR* 4.1 21.8 - - + +
171B VAL* 4.5 7.2 - - + -
125C ASN* 2.9 26.2 - - - +
126C ILE* 3.2 5.8 + - - +
128C ARG* 1.3 82.1 - - - +
130C ALA* 1.3 68.6 + - - +
132C GLU* 3.9 6.5 - - - -
133C THR* 3.0 27.0 + - - -
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Residues in contact with ALA 130 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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168B THR* 5.2 5.3 - - + +
126C ILE* 3.0 14.5 + - + +
127C MET* 3.2 20.0 - - - +
129C ILE* 1.3 80.1 - - - +
131C ARG* 1.3 58.4 + - + +
133C THR* 3.2 9.7 + - - +
134C ASN* 2.6 27.7 - - - +
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Residues in contact with ARG 131 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C GLN* 5.4 3.4 + - - -
127C MET* 3.7 25.4 + - - +
128C ARG* 2.8 43.4 + - - +
130C ALA* 1.3 71.3 - - + +
132C GLU* 1.3 55.6 + - - +
133C THR 2.7 16.0 + - - -
134C ASN* 2.8 20.9 + - - +
135C ILE* 3.4 16.6 + - + +
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Residues in contact with GLU 132 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160B GLU* 4.8 5.7 - - - +
164B LEU* 3.9 29.2 - - + +
128C ARG* 2.9 50.4 + - - +
129C ILE* 3.9 2.9 - - - +
131C ARG* 1.3 75.7 - - - +
133C THR* 1.3 58.0 + - - +
135C ILE* 3.6 17.8 - - + +
136C LEU* 3.0 33.0 + - + +
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Residues in contact with THR 133 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161B VAL* 5.3 13.7 - - + +
164B LEU* 3.0 33.8 - - - +
165B SER 5.2 0.3 + - - -
168B THR* 5.2 2.3 + - - -
129C ILE* 3.0 13.6 + - - +
130C ALA* 3.3 7.6 - - - +
131C ARG 2.7 5.5 + - - -
132C GLU* 1.3 71.5 - - - +
134C ASN* 1.3 62.0 + - - +
135C ILE 3.0 5.3 + - - -
136C LEU* 3.1 7.0 + - + +
137C ALA* 2.8 32.8 + - + +
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Residues in contact with ASN 134 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130C ALA* 2.6 29.1 - - - +
131C ARG* 2.8 12.9 + - - +
133C THR* 1.3 76.8 - - - +
135C ILE* 1.3 61.7 + - - +
137C ALA* 3.7 7.8 - - - +
138C LEU* 3.2 33.4 + - + +
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Residues in contact with ILE 135 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131C ARG* 3.4 18.1 + - + +
132C GLU* 3.6 18.6 - - + +
133C THR 3.0 0.4 - - - -
134C ASN* 1.3 77.2 - - + +
136C LEU* 1.3 59.4 + - + +
138C LEU* 2.8 11.7 + - + +
139C ASN* 2.8 51.3 + - - +
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Residues in contact with LEU 136 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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157B VAL* 3.3 25.9 - - + +
160B GLU* 3.5 35.4 - - + +
161B VAL* 3.7 20.9 - - + -
164B LEU* 4.1 18.4 - - + -
132C GLU* 3.0 32.0 + - + +
133C THR* 3.1 6.8 + - - +
135C ILE* 1.3 81.6 - - + +
137C ALA* 1.3 54.1 + - - +
139C ASN* 4.1 13.2 - - - +
140C ALA* 2.8 37.6 + - - +
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Residues in contact with ALA 137 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161B VAL* 4.4 7.2 - - + +
133C THR* 2.8 24.1 + - + +
134C ASN* 3.7 11.2 - - - +
136C LEU* 1.3 71.2 - - - +
138C LEU* 1.3 54.8 + - + +
140C ALA* 3.4 5.7 + - - +
141C THR* 2.8 35.6 + - - -
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Residues in contact with LEU 138 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134C ASN* 3.2 22.7 + - + +
135C ILE* 2.8 17.2 + - + +
137C ALA* 1.3 72.4 - - + +
139C ASN* 1.3 68.9 + - - +
141C THR* 3.0 25.3 + - + +
142C ILE* 2.9 31.6 + - + +
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Residues in contact with ASN 139 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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157B VAL* 4.1 10.5 - - + +
135C ILE* 2.8 39.1 + - - +
136C LEU* 3.7 18.1 - - - +
138C LEU* 1.3 71.7 - - - +
140C ALA* 1.3 57.0 + - - +
142C ILE* 2.7 33.5 + - - +
143C GLU* 2.9 24.1 + - + +
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Residues in contact with ALA 140 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154B PHE* 3.5 18.5 - - + -
157B VAL* 3.7 26.8 - - + +
158B ALA* 5.4 2.2 - - - +
161B VAL* 5.2 5.6 - - + -
136C LEU 2.8 21.4 + - - +
137C ALA* 3.4 7.6 - - - +
139C ASN* 1.3 73.1 - - - +
141C THR* 1.3 64.2 + - - +
142C ILE 3.1 0.9 + - - -
143C GLU* 4.9 0.2 - - - -
144C ALA* 3.2 23.4 + - - +
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Residues in contact with THR 141 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C ALA 2.8 15.3 + - - -
138C LEU* 3.0 32.1 + - + +
140C ALA* 1.3 78.1 - - - +
142C ILE* 1.3 66.1 + - + +
144C ALA* 3.5 5.4 - - - +
145C ALA* 3.4 18.5 + - - +
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Residues in contact with ILE 142 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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138C LEU* 2.9 29.8 + - + +
139C ASN* 2.7 22.8 + - - +
141C THR* 1.3 73.7 - - + +
143C GLU* 1.3 61.8 + - + +
144C ALA 2.9 1.6 - - - -
145C ALA* 2.7 29.5 + - + +
146C ARG* 2.8 43.2 + - + +
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Residues in contact with GLU 143 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149B GLU 3.9 2.3 - - - +
150B ALA* 3.3 35.7 - - - +
153B GLY* 3.6 27.7 - - - +
154B PHE* 4.0 19.7 - - + +
157B VAL* 4.9 2.2 - - + -
139C ASN* 2.9 24.7 + - + +
140C ALA 4.2 1.6 - - - +
142C ILE* 1.3 77.2 - - + +
144C ALA* 1.3 55.5 + - - +
146C ARG* 3.3 27.5 + - - +
147C ALA* 2.9 25.3 + - - +
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Residues in contact with ALA 144 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154B PHE* 4.1 21.7 - - + -
140C ALA 3.2 18.5 + - - +
141C THR* 3.5 8.5 - - - +
142C ILE 2.8 0.4 + - - -
143C GLU* 1.3 77.1 - - - +
145C ALA* 1.3 52.3 + - - +
147C ALA* 2.9 12.8 + - - +
148C GLY* 2.8 31.0 + - - -
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Residues in contact with ALA 145 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141C THR 3.4 10.0 + - - +
142C ILE* 2.7 15.2 + - + +
144C ALA* 1.3 76.5 - - - +
146C ARG* 1.3 55.5 - - - +
148C GLY* 3.2 4.2 + - - +
149C GLU* 3.0 33.2 + - - +
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Residues in contact with ARG 146 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146B ARG* 5.4 15.9 - - + +
149B GLU* 6.3 1.1 - - - -
150B ALA* 4.2 11.9 - - + +
142C ILE* 2.8 35.6 + - + +
143C GLU* 3.3 34.9 + - - +
145C ALA* 1.3 73.3 - - - +
147C ALA* 1.3 66.5 + - - +
149C GLU* 3.0 12.8 + - + +
150C ALA* 2.9 20.5 + - - +
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Residues in contact with ALA 147 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147B ALA* 5.6 2.0 - - + +
150B ALA* 3.6 16.4 - - + +
151B GLY* 5.1 4.7 - - - +
154B PHE* 6.4 0.9 - - + -
143C GLU 2.9 13.2 + - - +
144C ALA* 2.9 15.0 + - - +
146C ARG* 1.3 69.0 - - - +
148C GLY* 1.3 67.1 + - - +
150C ALA* 3.2 8.5 + - - +
151C GLY* 3.0 20.3 + - - -
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Residues in contact with GLY 148 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144C ALA 2.8 15.9 + - - -
145C ALA* 3.2 7.5 + - - -
147C ALA* 1.3 72.8 - - - +
149C GLU* 1.3 62.4 + - - +
151C GLY* 3.1 4.9 + - - -
152C LYS* 3.0 25.9 + - - +
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Residues in contact with GLU 149 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143B GLU* 4.9 1.4 - - - +
145C ALA 3.0 18.1 + - - +
146C ARG* 3.0 11.0 + - + +
148C GLY* 1.3 70.2 - - - +
150C ALA* 1.3 67.3 + - - +
152C LYS* 3.0 47.3 + - - +
153C GLY* 2.9 19.1 + - - -
----------------------------------------------------------
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Residues in contact with ALA 150 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143B GLU* 3.6 22.0 - - - +
146B ARG* 5.0 4.0 - - + +
147B ALA* 3.8 36.6 - - + +
146C ARG 2.9 12.2 + - - +
147C ALA* 3.2 10.1 + - - +
149C GLU* 1.3 75.9 - - - +
151C GLY* 1.3 56.8 + - - +
153C GLY* 3.0 15.8 + - - -
154C PHE* 3.1 22.6 + - + -
----------------------------------------------------------
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Residues in contact with GLY 151 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147C ALA 3.0 13.6 + - - -
148C GLY* 3.5 4.7 - - - -
149C GLU 3.1 0.2 - - - -
150C ALA* 1.3 71.6 - - - +
152C LYS* 1.3 64.0 + - - +
153C GLY 3.0 1.7 + - - -
154C PHE* 3.2 17.5 + - - +
155C MET* 3.0 26.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 152 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148C GLY 3.0 18.8 + - - +
149C GLU* 3.0 44.9 + - - +
151C GLY* 1.3 74.2 - - - +
153C GLY* 1.3 61.7 + - - +
155C MET* 3.4 12.0 + - - +
156C ILE* 3.1 25.9 + - + +
----------------------------------------------------------
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Residues in contact with GLY 153 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143B GLU* 3.3 22.0 - - - -
149C GLU 2.9 10.8 + - - -
150C ALA 3.0 6.9 + - - -
152C LYS* 1.3 74.9 - - - +
154C PHE* 1.3 53.3 + - - +
156C ILE* 2.7 38.2 + - - +
157C VAL* 3.0 16.3 + - - +
----------------------------------------------------------
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Residues in contact with PHE 154 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140B ALA* 4.3 7.4 - - + -
143B GLU* 4.2 8.7 - - + +
144B ALA* 3.8 37.0 - - + -
147B ALA* 4.0 18.4 - - + -
150C ALA* 3.1 28.2 + - + -
151C GLY* 3.5 14.6 - - - +
153C GLY* 1.3 69.9 - - - +
155C MET* 1.3 61.7 + - - +
157C VAL* 3.2 15.2 + - + +
158C ALA* 2.8 31.5 + - - +
----------------------------------------------------------
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Residues in contact with MET 155 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151C GLY 3.0 17.0 + - - +
152C LYS* 3.4 13.9 - - - +
154C PHE* 1.3 73.8 - - - +
156C ILE* 1.3 59.3 + - + +
158C ALA* 3.1 13.6 + - + +
159C ASN* 2.9 31.6 + - + +
----------------------------------------------------------
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Residues in contact with ILE 156 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152C LYS* 3.1 19.5 - - + +
153C GLY* 2.7 19.8 + - - +
155C MET* 1.3 68.9 - - + +
157C VAL* 1.3 58.7 + - - +
159C ASN* 3.3 5.6 + - + +
160C GLU* 2.8 59.5 + - - +
----------------------------------------------------------
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Residues in contact with VAL 157 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B LEU* 3.7 30.5 - - + -
139B ASN* 6.0 1.3 - - + -
140B ALA* 4.3 30.1 - - + +
143B GLU* 5.6 2.9 - - + -
153C GLY 3.0 15.3 + - - +
154C PHE* 3.4 19.7 - - + +
156C ILE* 1.3 74.3 - - - +
158C ALA* 1.3 59.1 + - - +
160C GLU* 3.2 2.4 + - - +
161C VAL* 2.9 45.0 + - + +
----------------------------------------------------------
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Residues in contact with ALA 158 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154C PHE 2.8 21.3 + - - +
155C MET* 3.4 15.3 - - + +
157C VAL* 1.3 74.3 - - - +
159C ASN* 1.3 61.3 + - - +
161C VAL* 3.6 7.1 + - - +
162C GLN* 3.2 22.3 + - - +
----------------------------------------------------------
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Residues in contact with ASN 159 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155C MET* 2.9 18.5 + - + +
156C ILE* 3.7 7.6 - - + +
158C ALA* 1.3 78.3 - - - +
160C GLU* 1.3 71.7 + - - +
162C GLN* 3.2 9.8 - - - +
163C ASN* 3.1 43.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 160 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B LEU* 3.6 24.7 - - + -
156C ILE* 2.8 46.0 + - - +
157C VAL 3.7 0.7 - - - +
159C ASN* 1.3 86.5 - - - +
161C VAL* 1.3 65.6 + - - +
163C ASN* 3.3 8.0 + - + +
164C LEU* 2.9 31.4 + - + +
----------------------------------------------------------
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Residues in contact with VAL 161 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B LEU* 3.9 18.6 - - + +
157C VAL* 2.9 34.4 + - + +
158C ALA* 3.9 6.3 - - - +
160C GLU* 1.3 74.7 - - - +
162C GLN* 1.3 55.1 + - - +
164C LEU* 3.6 7.3 - - + +
165C SER* 2.8 47.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 162 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158C ALA 3.2 11.2 + - - +
159C ASN* 3.2 15.5 - - - +
160C GLU 3.1 0.2 - - - -
161C VAL* 1.3 77.5 - - - +
163C ASN* 1.3 55.1 + - - +
165C SER* 2.7 13.8 + - - -
166C ASN* 2.7 67.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN 163 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159C ASN* 3.1 36.6 + - - +
160C GLU* 3.8 10.0 + - + +
162C GLN* 1.3 80.8 - - - +
164C LEU* 1.3 54.8 + - + +
166C ASN* 3.1 17.9 + - - +
167C GLU* 2.8 36.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 164 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B ILE* 4.1 21.7 - - + +
132B GLU* 4.3 27.8 - - + +
133B THR* 3.4 34.8 - - + +
136B LEU* 3.8 28.3 - - + -
160C GLU* 2.9 17.6 + - + +
161C VAL* 3.6 6.7 - - + +
163C ASN* 1.3 78.4 - - + +
165C SER* 1.3 57.6 + - - +
167C GLU* 3.1 10.6 + - - +
168C THR* 2.8 33.9 + - - -
----------------------------------------------------------
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Residues in contact with SER 165 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161C VAL* 2.8 33.6 + - - +
162C GLN* 2.7 15.5 + - - -
164C LEU* 1.3 69.0 - - - +
166C ASN* 1.3 65.4 + - - -
168C THR* 3.6 9.4 - - - -
169C ASN* 3.1 23.7 + - - +
----------------------------------------------------------
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Residues in contact with ASN 166 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162C GLN* 2.7 50.3 + - - +
163C ASN* 3.3 21.2 + - - +
165C SER* 1.3 74.1 - - - +
167C GLU* 1.3 58.9 + - - +
169C ASN* 3.1 8.0 + - - +
170C GLU* 2.9 34.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU 167 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B ASN* 3.6 25.3 + - - +
129B ILE* 3.7 21.5 - - + +
132B GLU* 5.5 2.1 - - - +
163C ASN 2.8 20.1 + - - +
164C LEU* 3.7 10.7 - - - +
166C ASN* 1.3 71.3 - - - +
168C THR* 1.3 68.5 + - - +
170C GLU* 3.3 7.4 + - + +
171C VAL* 3.1 26.2 + - + +
----------------------------------------------------------
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Residues in contact with THR 168 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B ILE* 5.2 14.8 - - + +
129B ILE* 3.8 24.3 - - + +
164C LEU 2.8 25.8 + - - -
165C SER* 3.6 8.7 - - - -
167C GLU* 1.3 72.5 - - - +
169C ASN* 1.3 57.2 + - - +
171C VAL* 3.1 3.9 + - - +
172C THR* 2.6 44.3 + - + +
----------------------------------------------------------
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Residues in contact with ASN 169 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165C SER 3.1 10.7 + - - +
166C ASN* 3.1 11.6 + - - +
168C THR* 1.3 80.8 - - - +
170C GLU* 1.3 68.2 + - - +
171C VAL 3.0 1.4 + - - -
172C THR* 4.2 4.2 - - - -
173C LYS* 3.0 56.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 170 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
166C ASN* 2.9 25.1 + - + +
167C GLU* 3.3 8.0 + - + +
169C ASN* 1.3 77.7 - - - +
171C VAL* 1.3 60.3 + - + +
173C LYS* 3.0 37.7 + - - +
174C GLN* 3.2 29.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 171 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B LEU* 3.9 30.5 - - + +
125B ASN* 3.4 29.4 - - - +
126B ILE* 3.5 31.2 - - + -
129B ILE* 4.9 2.7 - - + -
167C GLU* 3.1 20.2 + - + +
168C THR* 3.5 7.2 - - - +
169C ASN 3.0 0.6 - - - -
170C GLU* 1.3 77.4 - - + +
172C THR* 1.3 61.5 + - - +
173C LYS 3.1 2.0 - - - -
174C GLN* 2.9 26.2 + - - +
175C ILE* 2.9 11.8 + - + +
----------------------------------------------------------
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Residues in contact with THR 172 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B ILE* 4.5 13.9 - - + +
168C THR* 2.6 34.8 + - + +
169C ASN* 4.2 3.8 - - - -
171C VAL* 1.3 75.0 - - - +
173C LYS* 1.3 62.1 + - - +
175C ILE* 3.6 14.7 - - + +
176C VAL* 3.1 26.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 173 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169C ASN* 3.0 34.4 + - - +
170C GLU* 3.0 43.8 + - - +
172C THR* 1.3 76.2 - - - +
174C GLN* 1.3 53.1 + - + +
176C VAL* 3.0 12.0 + - - +
177C GLU* 2.7 36.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 174 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B LEU* 3.7 28.6 - - + +
170C GLU* 3.2 17.2 + - - +
171C VAL* 2.9 13.5 + - - +
173C LYS* 1.3 80.5 - - + +
175C ILE* 1.3 58.6 + - - +
177C GLU* 3.3 9.5 - - - +
178C LYS* 3.1 48.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE 175 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B ILE* 4.3 22.1 - - + +
122B LEU* 3.9 22.7 - - + -
123B ILE* 4.4 21.1 - - + +
126B ILE* 3.6 31.0 - - + -
171C VAL* 2.9 15.4 + - + +
172C THR* 3.6 16.2 - - + +
174C GLN* 1.3 74.9 - - - +
176C VAL* 1.3 59.0 + - + +
178C LYS* 3.1 4.9 + - - +
179C ALA* 2.8 38.3 + - + +
----------------------------------------------------------
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Residues in contact with VAL 176 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172C THR* 3.1 15.6 + - + +
173C LYS* 3.0 9.5 + - - +
175C ILE* 1.3 81.5 - - + +
177C GLU* 1.3 71.5 + - - +
179C ALA* 4.0 7.2 - - + +
180C ARG* 3.2 47.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 177 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173C LYS 2.7 13.2 + - - +
174C GLN* 3.3 16.6 - - - +
176C VAL* 1.3 83.1 - - - +
178C LYS* 1.3 71.1 + - - +
180C ARG* 3.3 12.8 + - - +
181C GLU* 2.9 38.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 178 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115B ASN* 3.9 24.0 - - - +
118B SER* 3.5 36.0 - - - -
119B ILE* 4.1 16.8 - - + +
122B LEU* 4.8 5.0 - - + +
174C GLN* 3.1 35.3 + - - +
175C ILE 3.1 4.4 + - - +
177C GLU* 1.3 83.4 + - + +
179C ALA* 1.3 66.6 + - - +
180C ARG 3.0 2.0 - - - -
181C GLU* 2.9 25.9 + - - +
182C ILE* 3.3 14.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 179 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B ILE* 4.2 11.8 - - + +
175C ILE* 2.8 24.8 + - + +
176C VAL* 4.0 11.7 - - + +
177C GLU 3.4 0.4 - - - -
178C LYS* 1.3 72.6 - - - +
180C ARG* 1.3 61.3 + - + +
182C ILE* 3.5 13.2 - - + +
183C LEU* 3.3 32.1 + - + +
----------------------------------------------------------
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Residues in contact with ARG 180 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176C VAL* 3.2 34.3 + - + +
177C GLU* 3.4 10.5 - - - +
178C LYS 3.0 0.6 - - - -
179C ALA* 1.3 75.1 - - + +
181C GLU* 1.3 61.4 + - + +
182C ILE 3.0 1.6 - - - -
183C LEU* 2.8 32.8 + - + +
184C GLU* 3.1 15.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 181 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B GLU* 3.0 25.6 - - - +
115B ASN* 3.4 14.8 + - - +
177C GLU* 2.9 36.6 - - - +
178C LYS* 2.9 16.6 + - - +
180C ARG* 1.3 76.2 - - + +
182C ILE* 1.3 58.3 + - - +
183C LEU 3.3 0.2 - - - -
184C GLU* 3.1 33.2 - - - +
185C SER* 3.2 12.3 + - - -
----------------------------------------------------------
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Residues in contact with ILE 182 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112B THR* 4.4 23.1 - - + +
115B ASN* 3.4 37.7 - - + +
116B ILE* 4.2 21.1 - - + -
119B ILE* 4.0 25.8 - - + -
178C LYS 3.3 3.8 + - - +
179C ALA* 3.5 14.1 - - + +
180C ARG 3.0 0.6 - - - -
181C GLU* 1.3 75.8 - - - +
183C LEU* 1.3 63.4 + - + +
184C GLU 3.4 0.7 - - - -
185C SER* 3.9 8.8 - - - +
186C SER* 3.5 18.7 + - - -
----------------------------------------------------------
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Residues in contact with LEU 183 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
179C ALA* 3.3 23.3 + - + +
180C ARG* 2.8 20.6 + - + +
182C ILE* 1.3 84.4 - - + +
184C GLU* 1.3 58.3 + - - +
185C SER 3.4 0.2 - - - -
186C SER* 3.5 12.2 - - - +
187C GLN* 3.5 21.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 184 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B GLU* 5.5 2.6 - - - +
180C ARG 3.1 11.7 + - - +
181C GLU* 3.1 30.5 - - - +
183C LEU* 1.3 76.5 - - - +
185C SER* 1.3 68.0 + - - +
186C SER 3.2 1.6 - - - -
187C GLN* 3.2 17.1 + - - +
188C ARG* 3.4 30.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 185 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108B GLN* 3.2 31.3 + - - +
111B GLU* 4.7 7.3 + - - -
112B THR* 4.4 12.9 + - - -
181C GLU 3.2 17.5 + - - -
182C ILE* 3.9 7.8 - - - -
183C LEU 3.4 0.4 - - - -
184C GLU* 1.3 84.6 + - - +
186C SER* 1.3 61.2 + - - +
187C GLN 3.2 0.4 - - - -
188C ARG* 3.4 23.5 + - - +
189C SER* 3.5 12.0 + - - -
----------------------------------------------------------
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Residues in contact with SER 186 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182C ILE 3.5 19.1 + - - -
183C LEU* 3.5 16.9 - - - +
184C GLU 3.2 0.2 - - - -
185C SER* 1.3 79.4 - - - +
187C GLN* 1.3 57.2 + - - +
189C SER* 4.2 5.8 - - - -
190C LEU* 3.1 44.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 187 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183C LEU 3.5 12.2 + - - +
184C GLU* 3.2 14.0 + - - +
185C SER 3.2 0.8 - - - -
186C SER* 1.3 81.5 - - - +
188C ARG* 1.3 58.6 + - - +
189C SER 3.3 0.4 - - - -
190C LEU* 4.1 16.4 - - - +
191C GLU* 3.1 34.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 188 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108B GLN* 3.0 43.9 + - - +
184C GLU* 3.4 31.1 + - - +
185C SER* 3.4 18.8 + - - +
187C GLN* 1.3 77.9 - - - +
189C SER* 1.3 64.1 + - - +
191C GLU* 3.7 7.6 - - - +
192C ASN* 2.8 30.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 189 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185C SER 3.5 14.4 + - - -
186C SER* 3.9 3.5 + - - -
188C ARG* 1.3 80.9 - - - +
190C LEU* 1.3 70.5 + - - +
191C GLU 3.1 4.9 - - - -
192C ASN* 3.3 28.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 190 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186C SER* 3.1 34.9 + - - +
187C GLN* 3.4 20.5 - - - +
188C ARG 3.6 0.2 - - - -
189C SER* 1.3 85.5 + - - +
191C GLU* 1.3 61.0 + - - +
192C ASN 4.7 2.2 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il