Contacts of the helix formed by residues 173 - 207 (chain D) in PDB entry 4K71


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASP 173 (chain D).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    171D  ALA*     4.0     5.1    -      -       -      +
    172D  ALA*     1.3    77.9    -      -       +      +
    174D  LYS*     1.3    63.6    +      -       -      +
    175D  ALA*     3.9     6.2    +      -       -      +
    176D  ALA*     3.4    29.8    +      -       +      +
    177D  CYS*     3.4    22.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 174 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    120D  VAL*     3.8    15.7    -      -       +      -
    121D  ASP*     3.2    38.1    +      -       -      +
    124D  CYS*     4.5    18.4    -      -       +      -
    168D  CYS*     3.7    21.8    -      -       -      +
    169D  CYS      4.3    13.9    -      -       -      +
    171D  ALA*     3.6    20.9    -      -       -      +
    172D  ALA      3.9     6.0    +      -       -      +
    173D  ASP*     1.3    70.8    +      -       -      +
    175D  ALA*     1.3    62.1    +      -       -      +
    177D  CYS*     3.5     2.1    +      -       -      +
    178D  LEU*     2.8    33.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 175 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    120D  VAL*     3.7    30.0    -      -       +      +
    173D  ASP*     3.5     5.8    +      -       -      +
    174D  LYS*     1.3    78.5    -      -       -      +
    176D  ALA*     1.3    58.8    +      -       -      +
    178D  LEU      4.5     0.2    -      -       -      +
    179D  LEU*     2.8    46.7    +      -       +      +
    180D  PRO*     3.6     0.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 176 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    166A  THR*     3.5     8.2    -      -       -      +
    173D  ASP*     3.4    32.4    +      -       +      +
    174D  LYS      3.4     0.6    -      -       -      -
    175D  ALA*     1.3    78.1    -      -       -      +
    177D  CYS*     1.3    57.7    +      -       -      +
    180D  PRO*     3.2    26.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 177 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    166A  THR*     4.0     5.2    -      -       -      +
    167D  GLU*     4.4    13.0    -      -       -      -
    168D  CYS*     2.1    52.9    -      -       +      -
    171D  ALA*     4.4     9.4    -      -       +      -
    173D  ASP      3.4    14.5    +      -       -      +
    174D  LYS      3.8     0.4    -      -       -      +
    175D  ALA      3.3     0.2    -      -       -      -
    176D  ALA*     1.3    80.6    -      -       -      +
    178D  LEU*     1.3    61.5    +      -       -      +
    180D  PRO*     3.9     2.9    -      -       -      +
    181D  LYS*     2.6    45.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 178 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    120D  VAL*     3.9    23.8    -      -       +      +
    123D  MET*     4.4     7.6    -      -       +      -
    124D  CYS*     4.6     8.5    -      -       -      -
    164D  ALA*     4.1    29.2    -      -       +      +
    165D  PHE*     3.8    28.7    -      -       +      -
    168D  CYS*     3.7     9.2    -      -       +      -
    169D  CYS*     5.0     1.1    -      -       -      -
    174D  LYS*     2.8    19.9    +      -       +      +
    175D  ALA*     4.2     1.6    -      -       -      +
    177D  CYS*     1.3    78.5    -      -       -      +
    179D  LEU*     1.3    68.4    +      -       +      +
    181D  LYS*     3.0    12.6    +      -       -      +
    182D  LEU*     3.1    40.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 179 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    117D  ARG*     3.6    40.6    +      -       +      +
    120D  VAL*     3.9    21.8    -      -       +      -
    123D  MET*     4.8     2.0    -      -       +      -
    175D  ALA*     2.8    37.8    +      -       +      +
    178D  LEU*     1.3    73.6    -      -       +      +
    180D  PRO*     1.3    59.6    -      -       +      +
    182D  LEU*     3.0     7.4    +      -       +      +
    183D  ASP*     2.9    37.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with PRO 180 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    163A  ALA      5.4     0.7    -      -       -      +
    166A  THR*     4.1    11.7    -      -       +      -
    167A  GLU*     3.9    29.6    -      -       +      +
    175D  ALA      3.6     1.3    -      -       -      +
    176D  ALA*     3.2    27.1    -      -       -      +
    177D  CYS      3.9     1.6    -      -       -      +
    178D  LEU      3.4     2.9    -      -       -      -
    179D  LEU*     1.3    93.4    -      -       +      +
    181D  LYS*     1.3    59.3    +      -       -      +
    183D  ASP*     3.9     9.1    -      -       +      +
    184D  GLU*     3.2    24.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 181 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    127A  PHE*     5.9     1.8    -      -       -      -
    165A  PHE      5.5     0.7    -      -       -      -
    166A  THR*     2.9    38.9    +      -       -      +
    167A  GLU      4.2     9.0    -      -       -      +
    169A  CYS*     5.8     2.5    -      -       -      -
    170A  GLN*     4.1    22.8    -      -       +      +
    164D  ALA*     4.0    26.9    -      -       +      -
    167D  GLU*     3.8    19.4    +      -       -      -
    168D  CYS*     3.6    17.9    -      -       -      -
    177D  CYS*     2.6    37.4    +      -       -      +
    178D  LEU*     3.0     8.1    +      -       +      +
    180D  PRO*     1.3    77.3    -      -       -      +
    182D  LEU*     1.3    58.9    +      -       -      +
    184D  GLU*     3.5     2.4    +      -       -      +
    185D  LEU*     3.1    32.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 182 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    117D  ARG*     4.0    32.3    +      -       -      +
    123D  MET*     4.3     3.1    -      -       +      -
    138D  TYR*     3.6    16.6    -      -       -      +
    161D  TYR*     3.7    33.9    +      -       +      -
    164D  ALA*     4.9     4.0    -      -       +      -
    165D  PHE*     3.7    30.1    -      -       +      -
    178D  LEU*     3.1    36.1    +      -       +      +
    179D  LEU*     3.0     9.6    +      -       +      +
    181D  LYS*     1.3    76.2    -      -       -      +
    183D  ASP*     1.3    65.1    +      -       -      +
    185D  LEU*     3.6     6.3    +      -       +      +
    186D  ARG*     3.0    23.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 183 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    117D  ARG*     3.2    23.2    +      -       -      -
    179D  LEU*     2.9    23.7    +      -       -      +
    180D  PRO*     3.9     8.2    -      -       +      +
    182D  LEU*     1.3    76.8    -      -       -      +
    184D  GLU*     1.3    56.2    +      -       -      +
    186D  ARG*     3.5     7.7    +      -       -      +
    187D  ASP*     3.0    37.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 184 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    167A  GLU*     3.6    35.5    -      -       +      +
    171A  ALA*     3.0    26.7    +      -       -      +
    177A  CYS*     3.5    17.8    -      -       -      +
    180D  PRO      3.2    17.2    +      -       -      +
    181D  LYS      3.6     4.7    -      -       -      +
    183D  ASP*     1.3    77.1    -      -       -      +
    185D  LEU*     1.3    57.0    +      -       -      +
    187D  ASP*     3.2     8.8    +      -       +      +
    188D  GLU*     2.7    71.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 185 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    170A  GLN      4.0    12.1    -      -       -      +
    172A  ALA      4.1     4.3    -      -       -      +
    157D  PHE*     3.5    29.6    -      -       +      -
    160D  ARG*     3.9    36.1    -      -       +      +
    161D  TYR*     3.5    45.1    +      -       +      +
    164D  ALA*     4.9     4.5    -      -       +      -
    181D  LYS*     3.1    21.8    +      -       +      +
    182D  LEU*     4.0     4.5    -      -       +      +
    184D  GLU*     1.3    80.9    -      -       -      +
    186D  ARG*     1.3    54.6    +      -       -      +
    188D  GLU*     3.8    14.4    -      -       -      +
    189D  GLY*     2.8    32.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 186 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114D  ARG*     3.8    44.4    +      -       -      +
    115D  LEU*     5.7     1.2    -      -       -      +
    117D  ARG*     4.7    13.7    -      -       -      +
    145D  ARG*     4.8    13.7    -      -       -      +
    146D  HIS*     5.1     8.3    +      -       -      -
    161D  TYR*     3.9     6.6    +      -       -      +
    182D  LEU      3.0    18.9    +      -       -      +
    183D  ASP*     3.6     9.4    -      -       -      +
    185D  LEU*     1.3    73.4    -      -       -      +
    187D  ASP*     1.3    65.6    +      -       -      +
    189D  GLY*     3.1     3.3    +      -       -      -
    190D  LYS*     2.9    62.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 187 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    183D  ASP*     3.0    22.1    +      -       -      +
    184D  GLU*     3.2     9.6    +      -       +      +
    186D  ARG*     1.3    81.7    -      -       -      +
    188D  GLU*     1.3    65.5    +      -       +      +
    190D  LYS*     3.3    13.7    +      -       -      +
    191D  ALA*     3.2    21.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 188 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    171A  ALA*     3.4     3.0    -      -       -      +
    172A  ALA*     2.8    24.5    +      -       -      +
    173A  ASP*     3.0    34.0    +      -       -      +
    177A  CYS*     5.3     0.2    -      -       -      +
    157D  PHE*     3.9    11.9    -      -       +      -
    184D  GLU*     2.7    53.7    +      -       -      +
    185D  LEU*     3.8     9.4    -      -       -      +
    187D  ASP*     1.3    72.7    -      -       -      +
    189D  GLY*     1.3    53.6    +      -       -      +
    191D  ALA*     3.1     7.8    +      -       -      +
    192D  SER*     2.8    35.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 189 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    142D  ILE*     5.7     1.8    -      -       -      -
    146D  HIS*     5.1     4.7    -      -       -      -
    149D  PHE*     3.5    19.5    -      -       -      -
    157D  PHE*     3.5    14.7    -      -       -      -
    185D  LEU      2.8    15.3    +      -       -      -
    186D  ARG*     3.5     5.2    -      -       -      -
    188D  GLU*     1.3    76.9    -      -       -      +
    190D  LYS*     1.3    59.7    +      -       -      +
    192D  SER      3.4     0.3    +      -       -      -
    193D  SER*     3.1    26.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 190 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    146D  HIS*     4.1    29.1    +      -       +      +
    186D  ARG*     2.9    52.7    +      -       +      +
    187D  ASP*     3.7    14.8    -      -       -      +
    188D  GLU      3.3     0.2    -      -       -      -
    189D  GLY*     1.3    76.4    -      -       -      +
    191D  ALA*     1.3    55.7    +      -       -      +
    193D  SER*     3.9     1.6    -      -       -      -
    194D  ALA*     3.0    30.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 191 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    187D  ASP      3.2    11.8    +      -       -      +
    188D  GLU*     3.1    11.0    +      -       -      +
    190D  LYS*     1.3    75.3    -      -       -      +
    192D  SER*     1.3    64.9    +      -       -      +
    194D  ALA*     3.4     6.1    +      -       -      +
    195D  LYS*     3.1    33.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 192 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    149D  PHE*     3.9    17.5    -      -       -      -
    150D  TYR*     5.3     0.9    -      -       -      +
    153D  GLU*     2.7    37.6    +      -       -      +
    157D  PHE*     4.4     5.2    -      -       -      -
    188D  GLU      2.8    17.5    +      -       -      -
    189D  GLY      3.8     4.0    -      -       -      -
    191D  ALA*     1.3    77.2    -      -       -      +
    193D  SER*     1.3    56.6    +      -       -      +
    195D  LYS*     3.3    10.8    +      -       -      +
    196D  GLN*     3.0    27.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 193 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    146D  HIS*     3.4    39.1    +      -       -      +
    148D  TYR*     4.7     2.9    +      -       -      +
    149D  PHE*     4.0    25.0    +      -       -      +
    189D  GLY      3.1    17.0    +      -       -      -
    190D  LYS      3.9     3.6    -      -       -      -
    192D  SER*     1.3    74.2    +      -       -      +
    194D  ALA*     1.3    60.6    +      -       -      +
    196D  GLN*     3.2     2.6    +      -       -      +
    197D  ARG*     2.8    31.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 194 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    190D  LYS      3.0    20.6    +      -       -      +
    191D  ALA*     3.7     7.0    -      -       -      +
    192D  SER      3.4     0.2    -      -       -      -
    193D  SER*     1.3    75.5    -      -       -      +
    195D  LYS*     1.3    62.3    +      -       -      +
    197D  ARG*     3.3     8.2    +      -       -      +
    198D  LEU*     3.2    19.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 195 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    191D  ALA*     3.1    23.6    +      -       -      +
    192D  SER*     3.6    10.3    -      -       -      +
    193D  SER      3.3     0.2    -      -       -      -
    194D  ALA*     1.3    74.8    -      -       -      +
    196D  GLN*     1.3    63.2    +      -       -      +
    198D  LEU*     2.9    19.7    +      -       -      +
    199D  LYS*     3.0    32.4    +      -       -      +
    214D  TRP*     6.4     0.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 196 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    148D  TYR      3.1    26.9    -      -       -      +
    150D  TYR*     3.5    37.6    -      -       +      +
    192D  SER      3.0    16.3    +      -       -      +
    193D  SER      3.2     3.6    +      -       -      +
    195D  LYS*     1.3    76.4    -      -       -      +
    197D  ARG*     1.3    62.9    +      -       -      +
    199D  LYS*     3.1    14.8    +      -       -      +
    200D  CYS*     2.9    25.6    +      -       -      -
    242D  HIS*     3.0    39.9    +      -       -      -
    245D  CYS*     4.7     4.6    -      -       -      +
    246D  CYS*     3.8    20.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 197 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108D  ASP*     2.9    37.4    +      -       -      +
    148D  TYR*     3.2    47.8    +      -       +      +
    193D  SER*     2.8    15.2    +      -       -      +
    194D  ALA*     3.5    13.0    -      -       -      +
    195D  LYS      3.2     0.2    -      -       -      -
    196D  GLN*     1.3    76.2    -      -       -      +
    198D  LEU*     1.3    56.0    +      -       -      +
    200D  CYS*     3.7    10.0    +      -       -      +
    201D  ALA*     3.0    46.6    +      -       +      +
    204D  GLN*     4.5     6.1    +      -       -      -
    205D  LYS*     5.9     4.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 198 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    194D  ALA      3.2    10.6    +      -       -      +
    195D  LYS*     2.9    13.9    +      -       -      +
    197D  ARG*     1.3    75.0    -      -       -      +
    199D  LYS*     1.3    66.7    +      -       +      +
    201D  ALA*     3.4     9.3    +      -       +      -
    202D  SER*     3.0    26.9    +      -       -      +
    214D  TRP*     6.2     4.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 199 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    195D  LYS*     3.0    33.6    +      -       -      +
    196D  GLN*     3.1    33.3    +      -       -      +
    198D  LEU*     1.3    75.7    -      -       +      +
    200D  CYS*     1.3    60.1    +      -       -      +
    202D  SER*     2.6    25.7    +      -       -      -
    203D  LEU*     3.1    11.9    +      -       -      +
    211D  PHE*     4.0    18.6    -      -       +      -
    214D  TRP*     3.3    45.5    -      -       +      -
    242D  HIS*     3.6    22.7    -      -       +      +
    246D  CYS*     4.5     2.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with CYS 200 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    148D  TYR*     4.0    20.2    -      -       +      -
    196D  GLN*     2.9    31.2    +      -       -      +
    197D  ARG*     4.0    13.5    -      -       -      +
    199D  LYS*     1.3    72.4    -      -       -      +
    201D  ALA*     1.3    60.9    +      -       -      +
    203D  LEU*     3.2     2.6    +      -       -      +
    204D  GLN*     2.8    42.2    +      -       -      +
    246D  CYS*     2.0    58.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 201 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    197D  ARG*     3.0    31.8    +      -       +      +
    198D  LEU*     3.7    13.0    -      -       +      +
    200D  CYS*     1.3    75.2    -      -       -      +
    202D  SER*     1.3    57.9    +      -       -      +
    204D  GLN*     5.0     1.3    -      -       -      -
    205D  LYS*     2.8    46.0    +      -       +      +
    206D  PHE*     3.7     7.1    +      -       +      -
----------------------------------------------------------
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Residues in contact with SER 202 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    198D  LEU*     3.0    18.6    +      -       -      +
    199D  LYS*     2.6    24.6    +      -       -      -
    201D  ALA*     1.3    75.3    -      -       -      +
    203D  LEU*     1.3    57.3    +      -       -      +
    206D  PHE*     3.0    35.3    +      -       -      +
    207D  GLY      3.0    14.0    +      -       -      +
    210D  ALA*     4.3    16.4    -      -       -      -
    211D  PHE*     3.8    16.9    -      -       -      +
    214D  TRP*     6.0     1.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 203 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    199D  LYS      3.1    12.9    +      -       -      +
    200D  CYS      3.6     5.2    -      -       -      +
    202D  SER*     1.3    85.3    +      -       -      +
    204D  GLN*     1.3    66.8    +      -       +      +
    207D  GLY*     3.3    21.3    +      -       -      -
    208D  GLU*     4.1    18.5    +      -       +      +
    211D  PHE*     3.5    29.8    -      -       +      -
    239D  THR*     4.3     7.4    -      -       +      +
    242D  HIS*     3.8    39.0    -      -       +      +
    243D  THR*     3.8    24.9    -      -       +      +
    246D  CYS*     4.1    11.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 204 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    148D  TYR*     4.5    14.6    +      -       -      -
    197D  ARG*     4.5     9.2    +      -       -      -
    200D  CYS*     2.8    31.9    +      -       -      +
    201D  ALA*     5.0     0.7    -      -       -      -
    203D  LEU*     1.3    80.1    -      -       +      +
    205D  LYS*     1.3    79.3    +      -       +      +
    207D  GLY      4.8     0.2    -      -       -      -
    246D  CYS*     2.9    36.1    +      -       +      +
    247D  HIS*     4.8     5.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 205 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    197D  ARG*     5.9     4.7    -      -       -      +
    201D  ALA*     2.8    26.9    +      -       +      +
    204D  GLN*     1.3    94.0    -      -       +      +
    206D  PHE*     1.3    81.1    +      -       +      +
    207D  GLY      3.8     0.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 206 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    201D  ALA*     3.9    15.0    -      -       +      -
    202D  SER*     3.0    16.7    +      -       -      +
    205D  LYS*     1.3    92.2    -      -       +      +
    207D  GLY*     1.3    61.9    +      -       -      +
    209D  ARG*     6.0     0.2    -      -       -      +
    210D  ALA*     3.8    20.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 207 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    202D  SER      3.0    14.7    +      -       -      +
    203D  LEU*     3.3    17.6    +      -       -      +
    204D  GLN      4.8     0.2    -      -       -      -
    205D  LYS      3.8     0.8    -      -       -      -
    206D  PHE*     1.3    79.1    -      -       -      +
    208D  GLU*     1.3    65.7    +      -       -      +
    209D  ARG*     3.3     3.1    -      -       -      -
    210D  ALA*     3.4    10.2    +      -       -      +
    211D  PHE      3.8     1.0    +      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il